Pseudo-multiple formation as a consequence of prolonged non-homologous chromosome association in Metrioptera brachyptera

Multiple configurations involving the L ₃ and L ₄ homologues have been observed in all individuals from a population sample of Metrioptera brachyptera. These associations which persist up to and including metaphase of the first meiotic division are non-homologous and achiasmate in character. They are conditioned by the persistent association of large distally located heterochromatic blocks on the L ₃ and L ₄ chromosomes and are not, as White has proposed, the result of crossing over in translocated terminal duplications. When the L ₃ and L ₄ chromosomes form bivalents the distal heterochromatin restricts crossing over in this region and chiasmata are localised proximally. In other members of the complement chiasmata are localised at either or both the centric and telomeric ends. A relationship is demonstrated between the pattern of chiasma localisation and that of chromosome pairing.     

Meiosis in polyhaploid Hordeum: hemizygous ineffective control of diploid-like behaviour in a hexaploid?

Meiotic chromosome behaviour was studied in the hexaploid Hordeum parodii (2n=6x=42) and in six haploids (2n=3x=21) obtained from a cross between H. parodii and H. bulbosum (2n=2x=14) whereby all bulbosum chromosomes were selectively eliminated. The alloploid nature of H. parodii was evident from the exclusive bivalent formation at the hexaploid level and the low and variable number of bivalents in its haploid derivatives. In haploids, both nonhomologous (intragenomic) and homoeologous (intergenomic) chromosomes paired at prophase. Foldbacks in single chromosomes, bivalents and trivalents were observed at prophase and metaphase I. At diakinesis, the associations involved a maximum of 20 chromosomes which decreased to 12 by metaphase I. This decrease was attributed to the failure of the non-homologous associations to persist until metaphase I. A hemizygous-ineffective control for the diploid-like behaviour of the hexaploid parodii is proposed to explain the homeologous chromosome pairing in its haploid derivatives.     

Meiotic segregation of chromosomes in Drosophila melanogaster oocytes

A new technique was developed for a light microscopic analysis of meiosis in Drosophila oocytes. — When the nuclear envelope breaks down the bivalents, till then compressed into a karyosome, separate in early prometaphase. The homologues remain associated by chiasmata except for the fourth chromosomes which are no longer associated. Non-homologous chromosomes regularly segregating from each other in genetic experiments are also unconnected after karyosome disintegration but during metaphase I the fourth chromosomes and the heterologous pairs coorient on the same arc of the spindle and move precociously towards opposite poles. Nondisjunction and other irregularities are not infrequent in oocytes having an uneven number of achiasmatic elements. The fourth chromosomes and the Xs or the large autosomes, when lacking chiasmata, may be involved in non-homologous segregation. In c3G homozygotes all chromosomes appear as univalents in prometaphase. Segregation is variable but the observations suggest the polar distribution of equal numbers of chromosomes in variable combinations irrespective of the size. — Coorientation of univalents may be accounted for if the centromeres, whether homologous or non-homologous, are associated in pairs during early meiotic prophase, and that in the karyosome these pairing relationships are preserved until spindle organization at the onset of prometaphase.     

Ultrastructural characterization of the sex chromosomes during spermatogenesis of spiders having holocentric chromosomes and a long diffuse stage

An ultrastructural study has been made of spermatogenesis in two species of primitive spiders having holocentric chromosomes (Dysdera crocata, XO and Segestria florentia X₁X₂O). Analysis of the meiotic prophase shows a scarcity or absence of typical leptotene to pachytene stages. Only in D. crocata have synaptonemal complex (SC) remnants been seen, and these occurred in nuclei with an extreme chromatin decondensation. In both species typical early prophase stages have been replaced by nuclei lacking SC and with their chromatin almost completely decondensed, constituting a long and well-defined diffuse stage. Only nucleoli and the condensed sex chromosomes can be identified. — In S. florentina paired non-homologous sex chromosomes lack a junction lamina and thus clearly differ from the sex chromosomes of more evolved spiders with an X₁X₂O male sex determination mechanism. In the same species, sex chromosomes can be recognized during metaphase I due to their special structural details, while in D. crocata the X chromosome is not distinguishable from the autosomes at this stage. — The diffuse stage and particularly the structural characteristics of the sex chromosomes during meiotic prophase are reviewed and discussed in relation to the meiotic process in other arachnid groups.     

Meiosis in haploid barley — An interpretation of non-homologous chromosome associations

Detailed meiotic studies were conducted on ten haploid plants representing six different genotypes of barley (Hordeum vulgare, 2n=14). At pachytene stages the non-homologous chromosomes were observed to pair as intimately as homologous chromosomes in many cells. Foldback pairing, involving single chromosomes, and multivalent associations were common. At diplotene, up to 4 chiasmatalike structures were observed in paired chromosomes but it is not likely that they resulted from crossing over. At diakinesis the bivalent frequency mean was from 1 to 1.3 per cell whereas by metaphase I the paired associations were rare with a single rod bivalent being observed in 3 to 5% of the cells. The frequencies of various types of secondary associations at metaphase were also recorded. — The origin and significance of bivalents and secondary associations in haploids is reviewed and discussed. Caution is urged in the interpretation that low levels of chromosome pairing in haploids is evidence of homology. It is concluded that very little chromosome duplication is likely to be found within the haploid set of barley chromosomes and that the basic chromosome number is seven.     

The fate of multivalents during meiotic prophase in the hybrid Gibasis consobrina x G. karwinskyana Rafin. (Commelinaceae)

The chromosomes of the two closely related diploid species, Gibasis consobrina and G. karwinskyana (Commelinaceae; 2n=2x=10), are morphologically alike, yet form few chiasmate associations at metaphase I in the f₁ hybrid. During meiotic prophase, however, synaptonemal complexes join the majority of the chromosomes of the complement in complex multiple pairing configurations. The F₁ hybrid between different tetraploid genotypes of the same two species similarly forms multivalents during meiotic prophase, which are subsequently eliminated in favour of strictly homologous bivalents before metaphase I. One quadrivalent comprising interchange chromosomes inherited from one of the parents, usually persists to first metaphase. Evidently the resolution of multivalents to bivalents at first metaphase, which accounts for diploidisation, is not attributable to the elimination of multivalents per se, but of multivalents comprising chromosomes of limited homology.     

A radiation analysis of a comstockiella chromosome system: destruction of heterochromatic chromosomes during spermatogenesis in Parlatoria oleae (Coccoidea: Diaspididae)

In the males of the olive scale insect, Parlatoria oleae (2n=8), the paternal set of chromosomes becomes heterochromatic during late cleavage or early blastula and remains so until spermatogenesis. Immediately before the onset of meiosis in the males one or more heterochromatic chromosomes disappear from each primary spermatocyte. At prophase four euchromatic and from one to three heterochromatic chromosomes are present in each cell. The disappearance of the heterochromatic chromosomes before meiosis could be due either to the dehetero-chromatization of the heterochromatic chromosomes and their subsequent pairing with their euchromatic homologues, or to the destruction of the heterochromatic chromosomes. — The alternative interpretations of spermatogenesis in P. oleae were tested by using chromosome aberrations, which had been induced in the heterochromatic set by paternal X-irradiation, as genetic markers in breeding tests of about 400 X₁ males. Meiosis was examined in X₁ males which showed conspicuous chromosomal rearrangements in their somatic cells. The absence of either heteromorphic chromosome pairs or multivalents at spermatogenesis and the failure of the X₁ males to transmit any form of chromosome aberration induced by paternal irradiation is strong evidence that the heterochromatic chromosomes are destroyed in P. oleae. — The evolutionary relationships of the chromosome systems in the coccids are considered. Models are outlined for the derivation of a Comstockiella system involving chromosome destruction either from a lecanoid sequence or from a hypothetical Comstockiella sequence involving chromosome pairing. Problems concerning the control of chromosome destruction are discussed.From a dissertation submitted in partial fulfillment of the requirements of Doctor of Philosophy in Genetics.This work was supported by grant GB 8196 from the National Science Foundation to Dr. Spencer W. Brown, and by a National Institutes of Health Fellowship 1 F02 CA 44173-01 to the author from the National Cancer Institute.Dedicated to Dr. Sally Hughes-Schrader on the occasion of her seventy-fifth birthday.     

Pseudoterminalisation,terminalisation, and non-chiasmate modes of terminal association

Terminal associations occur commonly between meiotic homologues of the two smallest (S10, S11) chromosomes in the northern race of Cryptobothrus chrysophorus when they are either heterozygous or homozygous for distal supernumerary heterochromatic segments. A detailed examination of the origin and behaviour of these associations provides convincing evidence that they are non-chiasmate in character and so cannot be explained by either pseudoterminalisation or terminalisation. The same is true of the terminal associations involved in the persistent pseudomultiples that develop between non-homologues of Heteropternis obscurella when one or both of these carry distal heterochromatic segments. In both situations the C-bands involved in such terminal associations are entire and are never interrupted by non-banded material. In Cryptobothrus, similar associations can also develop between centromere regions when these are heterozygous or homozygous for proximal supernumerary heterochromatic segments.     

Somatic association of telocentric chromosomes carrying homologous centromeres in common wheat

Summary Measurements of distances between telocentric chromosomes, either homologous or representing the opposite arms of a metacentric chromosome (complementary telocentrics), were made at metaphase in root tip cells of common wheat carrying two homologous pairs of complementary telocentrics of chromosome 1 B or 6 B (double ditelosomic 1 B or 6 B). The aim was to elucidate the relative locations of the telocentric chromosomes within the cell. The data obtained strongly suggest that all four telocentrics of chromosome 1 B or 6 B are spacially and simultaneously co-associated. In plants carrying two complementary (6 B ^S and 6 B ^L) and a non-related (5 B ^L) telocentric, only the complementary chromosomes were found to be somatically associated. It is thought, therefore, that the somatic association of chromosomes may involve more than two chromosomes in the same association and, since complementary telocentrics are as much associated as homologous, that the homology between centromeres (probably the only homologous region that exists between complementary telocentrics) is a very important condition for somatic association of chromosomes. The spacial arrangement of chromosomes was studied at anaphase and prophase and the polar orientation of chromosomes at prophase was found to resemble anaphase orientation. This was taken as good evidence for the maintenance of the chromosome arrangement — the Rabl orientation — and of the peripheral location of the centromere and its association with the nuclear membrane. Within this general arrangement homologous telocentric chromosomes were frequently seen to have their centromeres associated or directed towards each other. The role of the centromere in somatic association as a spindle fibre attachment and chromosome binder is discussed. It is suggested that for non-homologous chromosomes to become associated in root tips, the only requirement needed should be the homology of centromeres such as exists between complementary telocentrics, or, as a possible alternative, common repeated sequences of DNA molecules around the centromere region.Dedicated to Professor Dr. Marcus M. Rhoades on his 70th birthday.     

Most of the homoeologous pairing at metaphase I in wheat-rye hybrids is not chiasmatic

The use of telomeric C-bands in wheat-rye hybrids has made it possible to distinguish three types of wheat-wheat (1B^L) and wheat-rye associations (a, end-to-end extremely distal; b, end-to-ed distal; and c, interstitial) between homoeologous chromosomes at different metaphase I stages (early, middle and late) and also to estimate the actual recombination frequencies for such associations at anaphase I. There was a decrease of the a and b association frequencies during the different metaphase I stages, whereas the c type remained without variation in all stages. A good fit between the frequencies of c associations at metaphase I and the number of recombinant chromosomes at anaphase I, assuming a maximum of one chiasma per bond, was found; however, there was no correspondence between metaphase I and anaphase I data when all associations (a + b + c) were considered. In addition, rye-rye homologous pairing was observed at metaphase I, but no evidence for rye-rye recombination was found at anaphase I. The results indicate that most of end-to-end (a and b) homoeologous and nonhomologous associations are actually nonchiasmatic and are a remnant of prophase pairing.     

Meiotic differences between three triatomine species (Hemiptera,Reduviidae)

We have found the following differences in the male meiosis among three triatomine species: (1) The three largest autosomal bivalents ofTriatoma infestans are heterochromatic.Rhodnius prolixus has two autosomal bivalents with heterochromatic blocks.Triatoma rubrovaria does not show any heteropycnotic autosomes. (2) Sex chromosomes inT. infestans form a chromocenter. At early prophase terminal associations are seen between sex chromosomes inT. rubrovaria, and they maintain a close association until diakinesis. An intimate association between the X and Y chromosomes is observed during early prophase inR. prolixus, but a distant association is maintained by the sex chromosomes at diffuse and diplotene stages in this species. (3) Polyploid nuclei of the nutritive cells are quite distinct. Numerous chromocenters of different shapes and sized are seen in those ofT. infestans. InT. rubrovaria one chromocenter having two positively heteropycnotic elements is observed surrounded by homogeneous chromatin. Only one compact chromocenter is found amongst unevenly distributed chromatin, inR. prolixus.     

Meiotic Cohesin SMC1β Provides Prophase I Centromeric Cohesion and Is Required for Multiple Synapsis-Associated Functions

Cohesin subunit SMC1β is specific and essential for meiosis. Previous studies showed functions of SMC1β in determining the axis-loop structure of synaptonemal complexes (SCs), in providing sister chromatid cohesion (SCC) in metaphase I and thereafter, in protecting telomere structure, and in synapsis. However, several central questions remained unanswered and concern roles of SMC1β in SCC and synapsis and processes related to these two processes. Here we show that SMC1β substantially supports prophase I SCC at centromeres but not along chromosome arms. Arm cohesion and some of centromeric cohesion in prophase I are provided by non-phosphorylated SMC1α. Besides supporting synapsis of autosomes, SMC1β is also required for synapsis and silencing of sex chromosomes. In absence of SMC1β, the silencing factor γH2AX remains associated with asynapsed autosomes and fails to localize to sex chromosomes. Microarray expression studies revealed up-regulated sex chromosome genes and many down-regulated autosomal genes. SMC1β is further required for non-homologous chromosome associations observed in absence of SPO11 and thus of programmed double-strand breaks. These breaks are properly generated in Smc1β^−/− spermatocytes, but their repair is delayed on asynapsed chromosomes. SMC1α alone cannot support non-homologous associations. Together with previous knowledge, three main functions of SMC1β have emerged, which have multiple consequences for spermatocyte biology: generation of the loop-axis architecture of SCs, homologous and non-homologous synapsis, and SCC starting in early prophase I.     

Chiasma formation in duplicated segments of the haploid rye genome

In meiosis of haploid rye associations of two or more chromosomes are observed. In order to investigate whether these associations are chiasmate, metaphase I and anaphase I associations were analysed after Giemsa banding. — At anaphase I chromatid exchanges between differently marked chromosome arms were observed, which proved the presence of real chiasmata. The association between banded and unbanded arms shows that the heterochromatic telomeres do not act as secondary pairing sources. Different statistical approaches were used to test randomness of chiasma formation. It appeared to be non-random, which showed that the segments involved were non-randomly located and probably limited in number. The nature of these segments is discussed.     

The cytogenetic systems of grasshoppers and locusts

The australian plague locust (2n=23 male, 24 female) is distinctive in possessing three pairs of two-armed, short autosomes (S₉, S₁₀ and S₁₁). In two of these pairs (S₉, S₁₀) these arms are a constant feature but in the shortest (S₉) pair most individuals are either heterozygous for them or else are homozygous telocentric. Coupled with this five of the heterozygous individuals give evidence of occasional short-arm detachment.—In all the S-pairs the shorter of the two arms is invariably heterochromatic in character and in the S₉ and S₁₁ shows a bi- or tri-partite sub-structure which suggests they may have originated by tandem duplication. — Three of the other autosomes (L₂, M₃ and M₆) also have small heterochromatin(het)-blocks associated with them. At first meiotic prophase these frequently associate with the univalent X chromosome which itself displays an unconventional pattern of allocycly, its centric end appearing negatively heteropycnotic from leptotene through diplotene.—At metaphase I the het-blocks on the telocentric autosomes sometimes transform into swollen, negatively heteropycnotic, segments equivalent in appearance to that shown by the entire X at this stage. It is suggested that these puff-like structures represent an inter-chromosomal position effect conditional upon prior X/A het-association at first prophase.     

The spatial distribution of chromosomes in metaphase neuroblast cells from subspecific F1 hybrids of the grasshopper Caledia captiva

The spatial distribution of chromosomes has been analysed in radial metaphase neuroblast cells in F₁ hybrid embryos generated by crossing individuals of the Moreton and Torresian (TT) chromosomal taxa of the grasshopper Caledia captiva. The Moreton individuals were of two kinds depending on whether they carried an acrocentric X (MAX) or a metacentric X (MMX). No significant associations were detected between any pair of homologous chromosomes in either male or female (MAX x TT) and (MMX x TT) F₁ hybrids. This result was supported by data which showed that the mean separation between homologues is greater, although not significantly so, than the mean separation between non-homologous chromosomes within the two Moreton genomes. Indeed, in a number of cases, genome separation was clearly observed in radial metaphase preparations from these F₁ hybrids. By comparison the analysis of pairwise associations between non-homologous chromosomes within the MMX and MAX Moreton genomes revealed a number of significant associations and dissociations which strongly suggests that at least some chromosomes in these genomes are organised non-randomly at metaphase. Of particular interest was the highly significant X-5 association in the MMX genome since in a previous study X-5 rearrangements were found to occur repeatedly among different backcross progeny involving Moreton x Torresian F₁ hybrids. Additionally a comparison of the organisation of chromosomes in the MAX and MMX genomes, which differ primarily by the type of X chromosome, revealed that in a number of cases pairs of chromosomes are arranged very differently with respect to each other. The distribution of chromosomes on the hollow spindle was also analysed to investigate whether a specific spatial ordering of chromosomes exists within these Moreton genomes based on the association of pairs of short arms and pairs of long arms of most similar length (the Bennett model). The twelve chromosomes in both genomes were uniquely ordered in a single chain. However, because of computing limitations, only the ordered arrangement of chromosomes 1–10 was investigated. An analysis of 48 cells in the MMX and 38 cells in the MAX genomes showed that the predicted order in the ten chromosome sub-set in each genome did not rank in the top 20% of the 181,440 possible orders. This suggests that, although there is a good evidence that some non-homologous chromosomes may be associated non-randomly at metaphase in these genomes, they do not appear to show a specific, ordered arrangement as predicted by the Bennett model. The significance of the observed non-random organisation of chromosomes in the MMX and MAX genomes is discussed in relation to the generation of novel chromosome rearrangements in Moreton x Torresian F₁ hybrids and the evolution of the Moreton and Torresian genomes.     

Meiotic effects of supernumerary heterochromatin in Heteropternis obscurella

The endemic Australian grasshopper Heteropternis obscurella shows considerable variation in respect of both chromosome structure and chromosome behaviour. The structural differences depend upon different patterns of heterochromatin distribution as revealed by C-banding. These involve differences between populations in respect of polytypic variation in the size of paracentromeric C-bands and differences within populations in respect of polymorphisms both for terminal blocks of heterochromatin in autosomes 3 to 8 and a large proximal block of heterochromatin in autosome 7. The behavioural differences stem in part from genotypically determined variation in the chiasma distribution pattern which is markedly localised in a majority of populations but more randomly distributed in populations from the south of Western Australia. Behavioural differences also arise as secondary consequences of the presence of those heterochromatic blocks which occur as polymorphisms. The distal blocks on autosomes 5, 6, 7 and 8 lead to a redistribution of chiasmata to more proximal sites while the proximal block on 7 leads to the virtual abolition of chiasma formation in that bivalent and its replacement by a non-chiasmate mechanism of segregation. This depends upon a persistent proximal heterochromatic association between the pairing partners. The presence of distal C-blocks on bivalents 3 to 8 gives rise to persistent pseudomultiples, formed as a result of heterochromatic associations between these blocks. Such pseudomultiples involve any two or three of these six bivalents, provided they carry distal blocks, and their frequency rises dramatically in the presence of the proximal heterochromatic block on chromosome 7.     

Non-homologous chromosome pairing and crossover formation in haploid rice meiosis

While many studies have provided significant insight into homolog pairing during meiosis, information on non-homologous pairing is much less abundant. In the present study, fluorescence in situ hybridization (FISH) was used to investigate non-homologous pairing in haploid rice during meiosis. At pachytene, non-homologous chromosomes paired and formed synaptonemal complexes. FISH analysis data indicated that chromosome pairing could be grouped into three major types: (1) single chromosome paired fold-back as the univalent structure, (2) two non-homologous chromosomes paired as the bivalent structure, and (3) three or more non-homologous chromosomes paired as the multivalent structure. In the survey of 70 cells, 65 contained univalents, 45 contained bivalents, and 49 contained multivalent. Moreover, chromosomes 9 and 10 as well as chromosomes 11 and 12 formed non-homologous bivalents at a higher frequency than the other chromosomes. However, chiasma was always detected in the bivalent only between chromosomes 11 and 12 at diakinesis or metaphase I, indicating the pairing between these two chromosomes leads non-homologous recombination during meiosis. The synaptonemal complex formation between non-homologs was further proved by immunodetection of RCE8, PAIR2, and ZEP1. Especially, ZEP1 only loaded onto the paired chromosomes other than the un-paired chromosomes at pachytene in haploid.     

Deficiency of X and Y chromosomal pairing at meiotic prophase in spermatocytes of sterile interspecific hybrids between laboratory mice (Mus domesticus) and Mus spretus

The normal association between the X and Y chromosomes at metaphase I of meiosis, as seen in air-dried light microscope preparations of mouse spermatocytes, is frequently lacking in the spermatocytes of the sterile interspecific hybrid between the laboratory mouse strains C57BL/6 and Mus spretus. The purpose of this work is to determine whether the separate X and Y chromosomes in the hybrid are asynaptic, caused by failure to pair, or desynaptic, caused by precocious dissociation. Unpaired X-Y chromosomes were observed in air-dried preparations at diakinesis, just prior to metaphase I. Furthermore, immunocytology and electron microscopy studies of surface-spread pachytene spermatocytes indicate that the X and Y chromosomes frequently fail to initiate synapsis as judged by the failure to form a synaptonemal complex between the pairing regions of the X and Y Chromosomes. Several additional chromosomal abnormalities were observed in the hybrid. These include fold-backs of the unpaired X or Y cores, associations between the autosome and sex chromosome cores, and autosomal univalents. The occurrence of abnormal autosomal and XY-autosomal associations was also correlated with cell degeneration during meiotic prophase. The primary breakdown in hybrid spermatogenesis occurs at metaphase I (MI), with the appearance of degenerated cells at late MI. In those cells, the X and Y are decondensed rather than condensed as they are in normal mouse MI spermatocytes. These results, in combination with the previous genetic analysis of spermatogenesis in hybrids and backcrosses with fertile female hybrids, suggest that the spermatogenic breakdown in the interspecific hybrid is primarily correlated with the failure of XY pairing at meiotic prophase, asynapsis, followed by the degeneration of spermatocytes at metaphase I. Secondarily, the failure of XY pairing can be accompanied by failure of autosomal pairing, which appears to involve an abnormal sex vesicle and degeneration at pachytene or diplotene.by C. Heyting     

Meiotic analysis of haploid and doubled haploid forms of Nicotiana otophora and N. tabacum

Detailed meiotic studies were conducted on anther-derived haploids of Nicotiana otophora (n = 12) and N. tabacum (n = 24). At midpachytene stages the non-homologous chromosomes apparently remain unpaired. However, since the spreading of chromosomes at this stage was poor, the possible partial pairing, if any, between non-homologues could not be determined with certainty. One to two univalents rarely exhibited partial foldback pairing involving a single arm or the intercalary regions of the same chromosome. — At diakinesis the bivalent-like structures ranged from 0–2 in Otophora and 0–7 per cell in Tabacum haploids. The bivalent-like configurations (mostly rod types with chromatin connections of varying thickness) observed at meta-anaphase I varied from 0 to 1 and 0 to 5 per cell in haploids of Otophora and Tabacum respectively. The various types of secondary associations of univalents at meta-anaphase I were also studied in different haploids. — The probable origin and significance of bivalent-like configurations and secondary associations observed in Nicotiana haploids is briefly discussed. Based on our results, it is concluded that there is very little intra- or intergenomic pairing, if any, in Nicotiana haploids studied. — The meiotic behavior of chromosomes in doubled haploids (N. tabacum) obtained by leaf mid-rib culture, root culture and spontaneous chromosome doubling was remarkably regular with a stable chromosome number of 2n = 48. The meiotic stability of the doubled haploids permits using these materials directly in the breeding program.Contribution from the Department of Agronomy, University of Kentucky. The investigation reported in this paper (72-3-51) is in connection with a project of the Kentucky Agricultural Experiment Station and is published with the approval of the Director.     

Chromosome and DNA methylation dynamics during meiosis in the autotetraploid Arabidopsis arenosa

Variation in chromosome number due to polyploidy can seriously compromise meiotic stability. In autopolyploids, the presence of more than two homologous chromosomes may result in complex pairing patterns and subsequent anomalous chromosome segregation. In this context, chromocenter, centromeric, telomeric and ribosomal DNA locus topology and DNA methylation patterns were investigated in the natural autotetraploid, Arabidopsis arenosa. The data show that homologous chromosome recognition and association initiates at telomeric domains in premeiotic interphase, followed by quadrivalent pairing of ribosomal 45S RNA gene loci (known as NORs) at leptotene. On the other hand, centromeric regions at early leptotene show pairwise associations rather than associations in fours. These pairwise associations are maintained throughout prophase I, and therefore likely to be related to the diploid-like behavior of A. arenosa chromosomes at metaphase I, where only bivalents are observed. In anthers, both cells at somatic interphase as well as at premeiotic interphase show 5-methylcytosine (5-mC) dispersed throughout the nucleus, contrasting with a preferential co-localization with chromocenters observed in vegetative nuclei. These results show for the first time that nuclear distribution patterns of 5-mC are simultaneously reshuffled in meiocytes and anther somatic cells. During prophase I, 5-mC is detected in extended chromatin fibers and chromocenters but interestingly is excluded from the NORs what correlates with the pairing pattern.