Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland)

The nitrogen cycling of Lake Cadagno was investigated by using a combination of biogeochemical and molecular ecological techniques. In the upper oxic freshwater zone inorganic nitrogen concentrations were low (up to ～3.4 μM nitrate at the base of the oxic zone), while in the lower anoxic zone there were high concentrations of ammonium (up to 40 μM). Between these zones, a narrow zone was characterized by no measurable inorganic nitrogen, but high microbial biomass (up to 4 × 10⁷ cells ml^?1). Incubation experiments with ¹⁵N‐nitrite revealed nitrogen loss occurring in the chemocline through denitrification (～3 nM N h^?1). At the same depth, incubations experiments with ¹⁵N₂‐ and ¹³C_DIC‐labelled bicarbonate, indicated substantial N₂ fixation (31.7–42.1 pM h^?1) and inorganic carbon assimilation (40–85 nM h^?1). Catalysed reporter deposition fluorescence in situ hybridization (CARD‐FISH) and sequencing of 16S rRNA genes showed that the microbial community at the chemocline was dominated by the phototrophic green sulfur bacterium Chlorobium clathratiforme. Phylogenetic analyses of the nifH genes expressed as mRNA revealed a high diversity of N₂ fixers, with the highest expression levels right at the chemocline. The majority of N₂ fixers were related to Chlorobium tepidum/C. phaeobacteroides. By using Halogen In Situ Hybridization‐Secondary Ion Mass Spectroscopy (HISH‐SIMS), we could for the first time directly link Chlorobium to N₂ fixation in the environment. Moreover, our results show that N₂ fixation could partly compensate for the N loss and that both processes occur at the same locale at the same time as suggested for the ancient Ocean.     

A case study of nitrogen saturation in western U.S. forests

Virtually complete nitrification of the available ammonium in soil and nitrification activity in the forest floor are important factors predisposing forests in the San Bernardino Mountains of southern California to nitrogen (N) saturation. As a result, inorganic N in the soil solution is dominated by nitrate. High nitrification rates also generate elevated nitric oxide (NO) emissions from soil. High-base cation saturation of these soils means that soil calcium depletion or effects associated with soil acidification are not an immediate risk for forest health as has been postulated for mesic forests in the eastern U.S. Physiological disturbance (e.g., altered carbon [C] cycling, reduced fine root biomass, premature needle abscission) of ozone-sensitive ponderosa pine trees exposed to high N deposition and high ozone levels appear to be the greater threat to forest sustainability. However, N deposition appears to offset the aboveground growth depression effects of ozone exposure. High nitrification activity reported for many western ecosystems suggests that with chronic N inputs these systems are prone to N saturation and hydrologic and gaseous losses of N. High runoff during the winter wet season in California forests under a Mediterranean climate may further predispose these watersheds to high nitrate leachate losses. After 4 years of N fertilization at a severely N saturated site in the San Bernardino Mountains, bole growth unexpectedly increased. Reduced C allocation below- ground at this site, presumably in response to ozone or N or both pollutants, may enhance the bole growth response to added N.     

Landscape patterns of understory composition and richness across a moisture and nitrogen mineralization gradient in Ohio (U.S.A.) Quercus forests

This study quantified relationships of understory vascular plant species composition and richness along environmental gradients over a broad spatial scale in second-growth oak forests in eastern North America. Species frequencies were recorded in 108 25 × 25 m plots in four study sites extending over 70 km in southern Ohio, U.S.A.. The plots were stratified into three long-term soil moisture classes with a GIS-derived integrated moisture index (IMI). In addition to the IMI, the environmental data matrix included eight soil and three overstory variables. Canonical correspondence analysis (CCA) indicated that variations in understory species composition were most strongly related to topographic variations in predicted moisture (IMI), N mineralization rate, nitrification rate, and soil pH. In addition, floristic variation at the regional scale was correlated with variations in soil texture, nitrification, pH, and PO₄ ^–, resulting from differences in the soil parent material complexes among sites. Species richness averaged 65 species/plot, and increased with moisture and fertility. Stepwise regression indicated that richness was positively correlated with N mineralization rate and nitrification rate, and inversely correlated with tree basal area. Greater richness on fertile plots was the largely the result of increasing forb richness. Forb richness per quadrat (2 m²) was most strongly and positively related to N mineralization rate. Conversely, richness of understory individuals of tree species was greatest on xeric, less-fertile plots. Our results describe general, broad-scale species-environment relationships that occurred at both the topographic scale (long-term moisture status and fertility) and the regional scale (geomorphological differences among the sites). Strong species richness-N mineralization correlations indicate an important link between below-ground processes and above-ground biodiversity. Because N availability was a strong correlate to vegetation patterns at a broad-scale, our results suggest that the increasing rates of atmospheric N deposition in the region could have a major impact on understory vegetation dynamics.     

Aspects of nitrogen fixation and denitrification byAzospirillum

Summary Model experiments were performed to investigate the nitrogen fixation (C₂H₂ reduction) and denitrification (N₂O formation) capabilities ofAzospirillum spp. in association with wheat. Plants and bacteria were grown together for a week and then assayed for activities. This association performed C₂H₂ reduction or N₂O formation, depending on the concentrations of nitrate and oxygen in the vessels. Both activities depended on theAzospirillum strains used. The newly isolatedAzospirillum amazonense strains Y1 and Y6 showed significant C₂H₂ reduction and low N₂O formation in association with wheat under the conditions employed and are possibly useful in practice. A cell-free preparation fromAzospirillum brasilense Sp 7 possessed a cytochrome cd type dissimilatory nitrite reductase.     

Nitrogen fixation in annual and perennial legume-grass mixtures across a fertility gradient

Background and aims

The selection of legume species and species mixtures influences agroecosystem nitrogen (N) and carbon cycling. We utilized a fertility gradient to investigate the effects of plant species interactions on biological N fixation of an annual and perennial legume in response to shifting soil resource availability.

Methods

Legume N fixation of annual field pea (Pisum sativum) and perennial red clover (Trifolium pratense) grown in monoculture and mixtures with oats (Avena sativa) or orchardgrass (Dactylis glomerata) was estimated using the ¹⁵N natural abundance method across 15 farm fields and we measured six soil N pools ranging from labile to more recalcitrant.

Results

Evidence of complementary and facilitative species interactions was stronger for the perennial red clover-orchardgrass mixture than for the annual field pea-oat mixture (N Land Equivalency Ratios were 1.6 and 1.2, respectively). We estimated that the transfer of fixed N from red clover to orchardgrass increased aboveground N fixation estimates by 15% from 33 to 38?kg?N ha^?1. Despite a more than 2-fold range in soil organic matter levels and more than 3-fold range in labile soil N pools across field sites, the N fertility gradient was not a strong predictor of N fixation. While grass N assimilation was positively correlated with soil N pools, we found only weak, inverse correlations between legume N fixation and soil N availability. In grass-legume mixtures, soil N availability indirectly influenced N fixation through plant competition.

Conclusions

These results suggest that increasing diversity of cropping systems, particularly through the incorporation of perennial mixtures into rotations, could improve overall agroecosystem N cycling efficiency.     

Soil microbial diversity and community structure across a climatic gradient in western Canada

Soil microbial functional diversity was assessed along a climatic gradient in Western Canada. Mineral soil samples were collected from jack pine (Pinus banksiana Lamb.) stands along an 800km transect between Prince Albert, Saskatchewan and Gillam, Manitoba. Microbial communities were isolated from the soil samples, washed and inoculated into wells of Gram-negative Biolog microplates. Optical density values were used to calculate Shannon diversity indices and to perform principal component analysis. Colour development rank plots (CDR) were created by expressing optical density values as a percentage of total colour development and plotting the wells in descending order. Soil microbial functional diversity decreased with increasing latitude and correlated positively with measures of atmospheric temperature and pH. Soil microbial diversity may be lower in northern sites due to decreased productivity, nutrient limitation and higher acidity. CDR plots are consistent with a trend of increasing environmental harshness moving north along the transect.     

Carbon and nitrogen dynamics across a natural precipitation gradient in Patagonia,Argentina

Abstract. Both ecosystem carbon gain and nutrient availability are largely constrained by the magnitude and seasonality of precipitation in arid and semi‐arid ecosystems. We investigated the role of precipitation on ecosystem processes along an International Geosphere Biosphere Programme (IGBP) transect in temperate South America. The transect consists of a contiguous precipitation gradient in the southern region of Argentinean Patagonia (44–45° S), from 100 mm to 800 mm mean annual precipitation (MAP) and vegetation ranging from desert scrub to closed canopy forest. Gravimetric soil water content tracked changes in seasonal and annual precipitation, with a linear increase in soil water content with increasing MAP. Above‐ground net primary production (ANPP) increased linearly along the gradient of precipitation (ANPP =– 31.2 + 0.52 MAP, r²= 0.84, p= 0.028), supporting the relationship that carbon assimilation is largely controlled by available water in these sites, and was in general agreement with regional models of ANPP and rainfall. However, inorganic soil nitrogen was also highly linearly correlated with both MAP ([N] = 0.19 MAP – 32, r²= 0.96, p= 0.003) and ANPP (ANPP = 2.6 [N_inorganic]+59.4, r²= 0.79, p= 0.042), suggesting a direct control of precipitation on nitrogen turnover and an interaction with nitrogen availability in controlling carbon gain. The asynchrony of precipitation and changes in dominant vegetation may play important roles in determining the carbon‐nitrogen interactions along this rainfall gradient.     

Biological nitrogen fixation in coniferous forest watershed areas in Central Sweden

An investigation on biological nitrogen fixation in the forest floor was carried out in five watershed areas in Central Sweden during the summers 1978 and 1979. Five different types of bottom layers with underlying soil horizons were investigated for nitrogen fixation. An inventory on the occurrence of potential nitrogen fixing lichens and alder trees was also carried out.
Low fixation rates were determined in mesic-soil mosses, F/H,layers and mineral soil. Though two orders of magnitude higher than in mesic-soil mosses, the nitrogen fixation in the investigated Sphagnum mosses must be considered as low, probably due to absence of blue-green algal associations. The contribution to total nitrogen fixation by lichens is low, but Alnus incana may play an important role. The estimated biological nitrogen fixation calculated as a weighted mean over the five watersheds is in the order of 0.5 kg N ha^-1 yr^-1.     

Symptoms of nitrogen saturation in an aggrading forested watershed in western Maryland

The objective of this study was to evaluate the nitrogen (N) biogeochemistry of an 18–22 year old forested watershed in western Maryland. We hypothesized that this watershed should not exhibit symptoms of N saturation. This watershed was a strong source of nitrate (NO₃ ⁻) to the stream in all years, with a mean annual export of 9.5 kg N ha⁻¹ year⁻¹ and a range of 4.4–18.4 kg N ha⁻¹ year⁻¹. During the 2001 and 2002 water years, wet deposition of inorganic N was 9.0 kg N ha⁻¹ year⁻¹ and 6.3 kg N ha⁻¹ year⁻¹, respectively. Watershed N export rates in 2001 and 2002 water years were 4.2 kg N ha⁻¹ year⁻¹ and 5.3 kg N ha⁻¹ year⁻¹, respectively. During the wetter water years of 2003 and 2004, the watershed exported 15.0 kg N ha⁻¹ year⁻¹ and 18.4 kg N ha⁻¹ year⁻¹, rates that exceeded annual wet deposition of N by a factor of two (7.5 kg N ha⁻¹ year⁻¹ in 2003) and three (5.5 kg N ha⁻¹ year⁻¹ in 2004). Consistent with the high rates of N export, were high concentrations (2.1–3.3%) of N in foliage, wood (0.3%) and fine roots, low C:N ratios in the forest floor (17–24) and mineral soil (14), high percentages (83–96%) of the amount of mineralized N that was nitrified and elevated N concentrations (up to 3 mg N l⁻¹) in soil solution. Although this watershed contained a young aggrading forest, it exhibited several symptoms of N saturation commonly observed in more mature forests.     

Temperature controls a latitudinal gradient in the proportion of watershed nitrogen exported to coastal ecosystems

Increased export of biologically available nitrogen (N) to the coastal zone is strongly linked to eutrophication, which is a major problem in coastal marine ecosystems (NRC (2000) Clean Coastal Waters: Understanding and Reducing the Effects of Nutrient Pollution. National Academy Press, Washington, DC; Bricker et al. (1999) National Estuarine Eutrophication Assessment. Effects of nutrient enrichment in the nation’s estuaries. NOAA-NOS Special Projects Office, Silver Spring, MD). However, not all of the nitrogen input to a watershed is exported to the coast (Howarth et al. (1996) Biogeochemistry 35:75–139; Jordan and Weller (1996) Bioscience 46:655–664). Global estimates of nitrogen export to coasts have been taken to be 25% of watershed input, based largely on northeastern U.S. observations (Galloway et al. (2004) Biogeochemistry 70:153–226; Boyer et al. (2006) Global Biogeochem Cycle 20:Art. No. GB1S91). We applied the N budgeting methodology developed for the International SCOPE Nitrogen project (Howarth et al. (1996) Biogeochemistry 35:75–139; Boyer et al. (2002) Biogeochemistry 57:137–169) to 12 watersheds in the southeastern U.S., and compared them with estimates of N export for 16 watersheds in the northeastern U.S. (Boyer et al. (2002) Biogeochemistry 57:137–169). In southeastern watersheds, average N export was only 9% of input, suggesting the need for downward revision of global estimates. The difference between northern and southern watersheds is not a function of the absolute value of N inputs, which spanned a comparable range and were positively related to export in both cases. Rather, the proportion of N exported was significantly related to average watershed temperature (% N export = 58.41 e^{−0.11 * temperature}; R ² = 0.76), with lower proportionate nitrogen export in warmer watersheds. In addition, we identified a threshold in proportionate N export at 38°N latitude that corresponds to a reported breakpoint in the rate of denitrification at 10–12°C. We hypothesize that temperature, by regulating denitrification, results in increased proportionate N export at higher latitudes. Regardless of the mechanism, these observations suggest that temperature increases associated with future climate change may well reduce the amount of nitrogen that reaches estuaries, which will have implications for coastal eutrophication.     

Vaccination rates and COVID outcomes across U.S. states

Rates of COVID deaths, hospitalizations, and cases differ markedly across U.S. states, as do rates of vaccination. This study uses cross-state regressions to assess impacts of vaccinations on COVID outcomes. A number of familiar issues arise concerning cross-sectional regressions, including omitted variables, behavioral responses to vaccination, and reverse causation. The benefits from a field context and from the broad range of observed variations suggest the value from dealing with these issues. Results reveal sizable negative effects of vaccination on deaths, hospitalizations, and cases up to early December 2021, although vaccine efficacy seems to wane over time. The findings for deaths apply to all-cause excess mortality as well as COVID-related mortality. The estimates imply that one expected life saved requires 248 additional doses, with a marginal cost around $55000, far below typical estimates of the value of a statistical life. Results since December 2021 suggest smaller effects of vaccinations on deaths and, especially, hospitalizations and cases, possibly because of diminished effectiveness of vaccines against new forms of the virus, notably the omicron variant. A further possibility is that confidence engendered by vaccinations motivated individuals and governments to lessen non-pharmaceutical interventions, such as masking and social distancing.     

Ecosystem processes and nitrogen export in northern U.S. watersheds

There is much interest in the relationship of atmospheric nitrogen (N) inputs to ecosystem outputs as an indicator of possible "nitrogen saturation" by human activity. Longer-term, ecosystem-level mass balance studies suggest that the relationship is not clear and that other ecosystem processes may dominate variation in N outputs. We have been studying small, forested watershed ecosystems in five northern watersheds for periods up to 35 years. Here I summarize the research on ecosystem processes and the N budget. During the past 2 decades, average wet-precipitation N inputs ranged from about 0.1 to 6 kg N ha(-1) year(-1) among sites. In general, sites with the lowest N inputs had the highest output-to-input ratios. In the Alaska watersheds, streamwater N output exceeded inputs by 70 to 250%. The ratio of mean monthly headwater nitrate (NO3-) concentration to precipitation NO3- concentration declined with increased precipitation concentration. A series of ecosystem processes have been studied and related to N outputs. The most important appear to be seasonal change in hydrologic flowpath, soil freezing, seasonal forest-floor inorganic N pools resulting from over-winter mineralization beneath the snowpack, spatial variation in watershed forest-floor inorganic N pools, the degree to which snowmelt percolates soils, and gross soil N mineralization rates.     

Understanding the variability in soybean nitrogen fixation across agroecosystems

Legume-based cropping systems have the potential to internally regulate N cycling due to the suppressive effect of soil N availability on biological nitrogen fixation. We used a gradient of endogenous soil N levels resulting from different management legacies and soil textures to investigate the effects of soil organic matter dynamics and N availability on soybean (Glycine max) N₂ fixation. Soybean N₂ fixation was estimated on 13 grain farm fields in central New York State by the ¹⁵N natural abundance method using a non-nodulating soybean reference. A range of soil N fractions were measured to span the continuum from labile to more recalcitrant N pools. Soybean reliance on N₂ fixation ranged from 36% to 82% and total N₂ fixed in aboveground biomass ranged from 40 to 224 kg N ha^?1. Soil N pools were consistently inversely correlated with % N from fixation and the correlation was statistically significant for inorganic N and occluded particulate organic matter N. However, we also found that soil N uptake by N₂-fixing soybeans relative to the non-nodulating isoline increased as soil N decreased, suggesting that N₂ fixation increased soil N scavenging in low fertility fields. We found weak evidence for internal regulation of N₂ fixation, because the inhibitory effects of soil N availability were secondary to the environmental and site characteristics, such as soil texture and corresponding soil characteristics that vary with texture, which affected soybean biomass, total N₂ fixation, and net N balance.     

海岸带地区的固氮、氨化、硝化与反硝化特征

海岸带是海洋环境中受人类活动影响最大、生物地球化学循环最为活跃的地区。这一地区氮的生物地球化学循环包括 :生物固氮、有机氮的氨化、氮的硝化、反硝化等 4个主要过程。概括性地介绍了有关这四个过程的发生机制、环境影响因素及研究方法等方面的研究动态、进展、存在的科学问题与今后的研究方向。过去十几年来 ,固氮主要集中在对束毛藻属的研究上 ,其间有两个重要发现 ,一是生物固氮在海洋氮循环中的作用远比人们以前的想象要重要得多 ;二是蓝细菌已经在海洋中存在了 2 0亿年 ,它们有可能调节大气中的 CO2 ,进而影响全球气候。由于有机物的结构千差万别 ,含氮有机物的氨化过程可能是一个简单的矿化反应 ,也有可能是一系列复杂的代谢过程 ,在水解酶的作用下含氮有机物降解为下一级化合物。硝化过程分两步进行 ,氨的硝化为反硝化细菌提供了重要的硝酸盐来源 ,通常采用同位素方法来研究硝化过程。发生在沉积物中的反硝化过程是氮循环的关键步骤 ,反硝化过程一方面减少了海水中初级生产者可利用的氮 ,另一方面产生了终结产物 N2 和 N2 O,而 N2 O是一种温室气体 ,可能影响全球气候变化     

Genomic and resistance gene homolog diversity of the dominant tallgrass prairie species across the U.S. Great Plains precipitation gradient

Background

Environmental variables such as moisture availability are often important in determining species prevalence and intraspecific diversity. The population genetic structure of dominant plant species in response to a cline of these variables has rarely been addressed. We evaluated the spatial genetic structure and diversity of Andropogon gerardii populations across the U.S. Great Plains precipitation gradient, ranging from approximately 48 cm/year to 105 cm/year.

Methodology/Principal Findings

Genomic diversity was evaluated with AFLP markers and diversity of a disease resistance gene homolog was evaluated by PCR-amplification and digestion with restriction enzymes. We determined the degree of spatial genetic structure using Mantel tests. Genomic and resistance gene homolog diversity were evaluated across prairies using Shannon''s index and by averaging haplotype dissimilarity. Trends in diversity across prairies were determined using linear regression of diversity on average precipitation for each prairie. We identified significant spatial genetic structure, with genomic similarity decreasing as a function of distance between samples. However, our data indicated that genome-wide diversity did not vary consistently across the precipitation gradient. In contrast, we found that disease resistance gene homolog diversity was positively correlated with precipitation.

Significance

Prairie remnants differ in the genetic resources they maintain. Selection and evolution in this disease resistance homolog is environmentally dependent. Overall, we found that, though this environmental gradient may not predict genomic diversity, individual traits such as disease resistance genes may vary significantly.     

DNA-probing indicates the occurrence of denitrification and nitrogen fixation genes in Hyphomicrobium. Distribution of denitrifying and nitrogen fixing isolates of Hyphomicrobium in a sewage treatment plant

Abstract: Twenty-six Hyphomicrobium isolates from the sewage treatment plant and its receiving water body in Plön (Schleswig-Holstein, Germany) and two culture collection strains were screened for the occurrence of genes coding for denitrification enzymes (dissimilatory nitrate, nitrite and nitrous oxide reductases), for dinitrogen fixation (nitrogenase reductase) and for nitrification (ammonia monooxygenase catalyzing the first stage of this process) by DNA-probing. More than one half of the isolates had genes coding for denitrification enzymes. The DNA-DNA hybridization signals obtained with the gene segments correlated with enzyme activity measurements. The DNA of some isolates distinctly hybridized with the nif H probe indicating the occurrence of nitrogenase in the genus Hyphomicrobium . No signal was detected with the gene probe for nitrification. The results show that probes consisting of gene segments can be employed successfully to monitor the occurrence of genes which can show complex expression and in bacteria growing at low rates. The distribution pattern of the denitrification genes indicates that methylotrophic prosthecate bacteria of the sewage treatment plant and its receiving water body occupy different ecological niches.     

Nonlinear root-derived carbon sequestration across a gradient of nitrogen and phosphorous deposition in experimental mesocosms

Enhanced sequestration of plant‐carbon (C) inputs to soil may mitigate rising atmospheric carbon dioxide (CO₂) concentrations and related climate change but how this sequestration will respond to anthropogenic nitrogen (N) and phosphorous (P) deposition is uncertain. We couple isotope, soil C fractionation and mesocosm techniques to assess the sequestration of plant‐C inputs, and their partitioning into C pools with different sink potentials, under an experimental gradient of N and P deposition (0, 10, 30, 60 and 100 kg N ha^?1 yr^?1; and 0, 2, 6, 12 and 20 kg P ha^?1 yr^?1). We hypothesized that N deposition would increase sequestration, with the majority of the C being sequestered in faster cycling soil pools because N deposition has been shown to accelerate the turnover of these pools while decelerating the turnover of slower cycling pools. In contrast to this hypothesis, sequestration into all soil C pools peaked at intermediate levels of N deposition. Given that P amendment has been shown to cause a net loss of soil C, we postulated that P deposition would decrease sequestration. This expectation was not supported by our data, with sequestration generally being greater under P deposition. When soils were amended simultaneously with N and P, neither the shape of the sequestration relationship across the deposition gradient, nor the observed sequestration at the majority of the deposition rates, was statistically predictable from the effects of N and P in isolation. The profound nonlinearities we observed, both for total sequestration responses and the partitioning of C into soil pools with different sink potentials, suggests that the rates of N and P deposition to ecosystems will be the critical determinant of whether they enhance or decrease the long‐term sequestration of fresh plant‐C inputs to soils.     

放牧干扰梯度下川西亚高山植物群落的组合机理

为了阐明放牧干扰对川西亚高山区域植物群落的组合过程以及群落结构的影响, 研究了放牧干扰梯度下的功能群均匀度和群落谱系结构的变化趋势。结果显示: 在干扰较轻的阔叶林与针叶林样地, 部分样方的功能群均匀度显著高于无效模型, 随着干扰梯度的增强, 功能群均匀度呈线性下降, 样方平均值从0.930降至0.840, 其高于无效模型的次数也逐渐降低, 干扰程度较大的草甸中出现部分样方的功能群均匀度显著低于无效模型。随着干扰程度的增强, 群落的谱系结构指数也呈逐渐上升趋势, 净关联指数平均值由-0.634逐渐增加至2.360, 邻近类群指数由-0.158上升至2.179。草甸与低矮灌丛受干扰较为严重, 其大部分样方的谱系结构指数显著高于随机群落, 表明干扰群落的谱系结构呈聚集分布。功能群均匀度与谱系结构的变化趋势一致, 表明生境筛滤效应与种间竞争作用的平衡决定着群落的组合过程。干扰降低了竞争作用, 促进了少数耐干扰功能群的优势地位, 造成功能群均匀度下降, 同时通过生境筛滤作用, 使群落的谱系结构呈现出聚集分布; 而未干扰的群落中由于竞争作用的效应, 功能群均匀度较高, 谱系结构也更加分散。研究区域植物群落的功能群均匀度与物种丰富度呈负相关, 表明物种间特别是相似物种间的竞争限制了群落的物种多样性。研究结果说明, 生态位分化和物种间的相互竞争在物种共存与群落组合中具有重要作用。     

Co-occurrence patterns of common and rare leaf-litter frogs, epiphytic ferns and dung beetles across a gradient of human disturbance

Indicator taxa are commonly used to identify priority areas for conservation or to measure biological responses to environmental change. Despite their widespread use, there is no general consensus about the ability of indicator taxa to predict wider trends in biodiversity. Many studies have focused on large-scale patterns of species co-occurrence to identify areas of high biodiversity, threat or endemism, but there is much less information about patterns of species co-occurrence at local scales. In this study, we assess fine-scale co-occurrence patterns of three indicator taxa (epiphytic ferns, leaf litter frogs and dung beetles) across a remotely sensed gradient of human disturbance in the Ecuadorian Amazon. We measure the relative contribution of rare and common species to patterns of total richness in each taxon and determine the ability of common and rare species to act as surrogate measures of human disturbance and each other. We find that the species richness of indicator taxa changed across the human disturbance gradient but that the response differed among taxa, and between rare and common species. Although we find several patterns of co-occurrence, these patterns differed between common and rare species. Despite showing complex patterns of species co-occurrence, our results suggest that species or taxa can act as reliable indicators of each other but that this relationship must be established and not assumed.