An assessment of soil bacterial community structure and physicochemistry in two microtopographic locations of a palustrine forested wetland

We studied redoximorphic features, field indicators and bacterial communities of soils in hummocks and hollows of a palustrine forested wetland in Virginia. We hypothesized that presence of hydric soils, soil physicochemistry and soil bacterial community structure would differ between hummocks and hollows. We fingerprinted soils collected from different microtopographic locations using Length Heterogeneity Polymerase Chain Reaction (LH-PCR) to study their bacterial community structures. Two hummocks had silty/sandy loam soils with mean chroma values of > 4, showing no indication of ‘hydric soils’ (i.e., wetland soils). Two hollows, however, had clay loam soils with mean chroma values of 2 with gleying and redox concentrations observed, indicative of seasonally inundated wetlands. The soils of hollows also had higher organic matter content and soil moisture compared to the soils of hummocks (P < 0.05). Multidimensional scaling (MDS) and Analysis of similarity (ANOSIM) of the fingerprints revealed differences in soil microbial community structures between hummocks and hollows (Global R = 0.30, P < 0.01). The diversity measures of the fingerprints (Shannon’s H′) were also different by microtopography with higher diversity in hollows relative to hummocks (P < 0.05). LH-PCR proves to be a useful tool in examining bacterial community composition of wetland soils in this study. However, cloning and sequencing of specific community LH-PCR profiles of interest is necessary to fully characterize the community down to genus/species level. With species identities we should be able to not only better explain differences observed in the community profiles, but study their relations to hydrologic and/or physicochemical conditions of wetlands.     

Accelerated volatilization rates of selenium from different soils

Selenium (Se), an element found naturally in a variety of soils, can accumulate in drainage water of lands under intensive irrigation, even reaching levels that are toxic to mammals and birds. Volatilization of Se by soil microorganisms into dimethylselenide (DMSe) can be enhanced by certain soil amendments and, thus, be used as a soil remediation process. In an 8-wk laboratory study, five soils from California and one from Germany were spiked with⁷⁵SeO₃ ^2- (22.3 mg/kg Se). Two amino acids (DL-homocysteine and L-methionine), a carbohydrate (pectin), and a protein (zein) were tested as soil amendments. Gaseous⁷⁵Se emissions were trapped with activated carbon and measured in a gamma counter. Depending on soil type, the cumulative volatilization from the control flasks varied between 1.2% and 9.0% of applied⁷⁵Se. Both zein and L-methionine strongly increased volatilization (max. 43% of⁷⁵Se applied), whereas DL-homocysteine had a much smaller stimulating effect. Pectin showed a moderate effect, but enhanced Se volatilization rates were sustained much longer when compared to the zein amendment. Volatilization rates of Se followed a simple first-order reaction. Gaseous Se emission in the soils treated with L-methionine yielded an S-shaped curve, which fit a growth-modified first-order rate model. Although zein and L-methionine were the most favorable treatments enhancing Se volatilization, all six soils responded differently to the soil amendments.     

Soil hydraulic manipulation and organic amendment for the enhancement of selenium volatilization in a soil–pickleweed system

Biological volatilization of selenium (Se) in contaminated areas represents an environmentally friendly phytoremediation approach. Implementation of phytovolatilization technology for the remediation of Se-contaminated soils or sediments is oftentimes limited by its low remediation efficiency under field conditions. This greenhouse study determined the feasibility of manipulating soil organic content and hydraulic conditions in a soil–pickleweed (Salicornia bigelovii) system for the enhancement of Se volatilization. Based on annual shoot biomass production rate under field conditions (approximately 1.5 kg m⁻²), the addition of pickleweed shoot tissues to the soil surface resulted in 2.2-fold more biogenic volatile Se than the control, up to 251.6 ± 140.5 μg m⁻² d⁻¹. Selenium volatilization was significantly reduced at a soil water potential of −25 kPa, but substantially increased after re-irrigation to 0 kPa. In a 42-day experiment, the rate of Se volatilization was significantly correlated with soil water potential (P < 0.0001). Findings from this study demonstrate that Se volatilization be substantially enhanced by amending soil with pickleweed residues and by creating wetting and drying cycles that can be monitored with soil water potential probes in the field.     

Allelopathic effect of Pluchea lanceolata (Asteraceae) on characteristics of four soils and tomato and mustard growth

The effect of the leachate of the noxious weed Pluchea lanceolata was explored using mustard and tomato seedling growth bioassays of four soil types (sandy loam, clay loam, silty loam, and sand). The objectives of the present study were: 1) to determine how soil chemistry changes after addition of leachate and leaves of the weed; 2) to determine what level of input to the soil does not cause significant differences from those of weed-associated soils under field conditions; and 3) to determine whether soil texture affects bioassay results. Leaf leachates of the weed were added to four soil types in different dilutions, and soils were analyzed for pH, electrical conductivity, organic matter, Cl, PO₄, exchangeable Cu^{+ +}, Zn^{+ +}, Na⁺, K⁺, Mg^{+ +}, and Ca^{+ +}, and total phenolics. These results indicated that the leachates of the weed altered chemical characteristics of each soil type. Concentration of phenolics in treatment of each soil type was dilution-dependent. Leachates were more inhibitory on sandy loam and clay loam than on silty loam and sand. Present study indicated that in allelopathic bioassays, amended soils that are nonsignificantly different from weed-associated soils should be taken. Further, present investigations confirmed the significance of good control soil with nonsignificantly altered chemical characteristics from those of natural soils, as well as soil texture to establish allelopathy of ecological relevance.     

Organic Amendments to Enhance Atrazine and Metamitron Degradation in Two Contaminated Soils with Contrasting Textures

Among all types of xenobiotics, pesticides such as herbicides play a significant role in soil and water pollution due to their wide usage all over the world. This study addresses the ability of organic amendments to enhance atrazine and metamitron degradation in two herbicide-contaminated soils with contrasting textures under laboratory conditions. Soil samples were collected from surface soils with textures of sandy loam and silty clay, from northeastern Iran. Initial concentration of herbicides was 50 mg · kg^{? 1} soil. Contaminated soil samples were treated with manure, compost and vermicompost at rates of 0, 0.5, and 2% (w/w). Residual concentrations of atrazine and metamitron were determined by HPLC at the end of incubation periods of 20, 40, and 60 days. Residual concentrations of atrazine were 46.5, 38.9, and 36.2 mg · kg^{? 1} after 20, 40, and 60 days incubation, respectively. Residual metamitron concentrations were clearly lower than atrazine. After 20, 40, and 60 days, concentrations of metamitron were 2.9, 1.0, and 0.6 mg · kg^{? 1}, respectively. Organic amendments at the rates of 0.5 and 2% showed similar effects on the enhancement of herbicide degradation in soils. However, no statistically significant effect was observed among types of organic amendments (α = 0.05). Degradation was affected by soil textures. Residual concentrations of herbicides were higher in sandy loam than in silty clay soil.     

Changes in the bacterial populations of the highly alkaline saline soil of the former lake Texcoco (Mexico) following flooding

Flooding an extreme alkaline-saline soil decreased alkalinity and salinity, which will change the bacterial populations. Bacterial 16S rDNA libraries were generated of three soils with different electrolytic conductivity (EC), i.e. soil with EC 1.7 dS m⁻¹ and pH 7.80 (LOW soil), with EC 56 dS m⁻¹ and pH 10.11 (MEDIUM soil) and with EC 159 dS m⁻¹ and pH 10.02 (HIGH soil), using universal bacterial oligonucleotide primers, and 463 clone 16S rDNA sequences were analyzed phylogenetically. Library proportions and clone identification of the phyla Proteobacteria, Actinobacteria, Acidobacteria, Cyanobacteria, Bacteroidetes, Firmicutes and Cloroflexi showed that the bacterial communities were different. Species and genera of the Rhizobiales, Rhodobacterales and Xanthomonadales orders of the α- and γ-subdivision of Proteobacteria were found at the three sites. Species and genera of the Rhodospirillales, Sphingobacteriales, Clostridiales, Oscillatoriales and Caldilineales were found only in the HIGH soil, Sphingomonadales, Burkholderiales and Pseudomonadales in the MEDIUM soil, Myxococcales in the LOW soil, and Actinomycetales in the MEDIUM and LOW soils. It was found that the largest diversity at the order and species level was found in the MEDIUM soil as bacteria of both the HIGH and LOW soils were found in it.     

Influence of maize root mucilage on soil aggregate stability

This study was undertaken to determine the effects of root exudates on soil aggregate stability. Root mucilage was collected from two-month old maize plants (Zea mays L.) Mucilage and glucose solutions were added at a rate of 2.45 g C kg⁻¹ dry soil to silty clay and silt loam soils. Amended soils, placed in serum flasks, were incubated for 42 d with a drying-wetting cycle after 21 d. Evolved CO₂ was measured periodically as well as the water-stable aggregates and soluble sugar and polysaccharide content of the soil. In mucilage-amended soils CO₂ evolution started with a lag phase of 2–3 days, which was not observed in glucose-amended soils. There was then a sharp increase in evolved CO₂ up to day 7. During the second incubation period there were only small differences in evolved C between treatments. Incorporation of mucilage in both soils resulted in a spectacular and immediate increase in soil aggregate stability. Thereafter, the percent of water-stable aggregates quickly decreased parallel to microbial degradation. On completion of the incubation, aggregate stability in the silty clay soil was still significantly higher in the presence of mucilage than in the control. This work supports the assumption that freshly released mucilage is able to stick very rapidly to soil particles and may protect the newly formed aggregates against water destruction. On the silty clay, microbial activity contributes to a stabilization of these established organo-mineral bounds.     

Estimation of bioavailability and potential risks of naphthalene in soils with solid phase microextraction

A series of batch experiments were conducted to observe the variations of bioavailability of naphthalene in different types of soil with indigenous microorganisms. Solid phase microextraction (SPME) was employed to estimate the bioavailability of naphthalene in the soils. Various soil properties were attained by artificially modifying soil organic matter (SOM) with the addition of bagasse compost and textures with the addition of original silt and clay to determine the correlation between the amount of biodegraded naphthalene after 300 h and the amount of extractable naphthalene by SPME. Experimental results indicated that the biodegradation rate increased from 0.30 (sandy loam) to 0.48 (silty loam) μg g⁻¹ h⁻¹ when soils had more silt/clay. In contrast, the biodegradation rate slightly decreased from 0.30 (1.3% SOM) to 0.20 (5.2% SOM) μg g⁻¹ h⁻¹ when the SOM was high. Distributions of naphthalene in soils after biodegradation were affected by the addition of bagasse compost. It showed that the bioavailability of naphthalene in soils decreased with an increase in SOM. Sequestration as measured by ultrasonic extractability evidently occurred within 4 months in aged soil samples. However, the amounts extracted by sonication after 4 and 16 months of aging did not statistically differ from each other. The SPME measurements correlated well with the amount of biodegraded naphthalene by indigenous microorganisms. Results of this study demonstrate that SPME is a promising method to estimate the bioremediation efficacy of naphthalene-contaminated soils with various properties.     

Characteristics of Soil and Organic Carbon Loss Induced by Water Erosion on the Loess Plateau in China

Soil erosion has been a common environmental problem in the Loess Plateau in China. This study aims to better understand the losses of soil organic carbon (SOC) induced by water erosion. Laboratory-simulated rainfall experiments were conducted to investigate the characteristics of SOC loss induced by water erosion. The applied treatments included two rainfall intensities (90 and 120 mm h^-1), four slope gradients (10°, 15°, 20°, and 25°), and two typical soil types- silty clay loam and silty loam. Results showed that the sediment OC enrichment ratios (ERoc) in all the events were relative stable with values ranged from 0.85 to1.21 and 0.64 to 1.52 and mean values of 0.98 and 1.01 for silty clay loam and silty loam, respectively. Similar to the ERoc, the proportions of different sized particles in sediment showed tiny variations during erosion processes. No significant correlation was observed between ERoc values and the proportions of sediment particles. Slope, rainfall intensity and soil type almost had no impact on ERoc. These results indicate that the transportation of SOC during erosion processes was nonselective. While the mean SOC loss rates for the events of silty clay loam and silty loam were 0.30 and 0.08 g m^-2 min^-1, respectively. Greater differences in SOC loss rates were found in events among different soil types. Meanwhile, significant correlations between SOC loss and soil loss for all the events were observed. These results indicated that the amount of SOC loss was influenced primarily by soil loss and the SOC content of the original soil. Erosion pattern and original SOC content are two main factors by which different soils can influence SOC loss. It seems that soil type has a greater impact on SOC loss than rainfall characteristics on the Loess Plateau of China. However, more kinds of soils should be further studied due to the special formation processes in the Loess Plateau.     

Soil moisture effect on bacterial and fungal community in Beilu River (Tibetan Plateau) permafrost soils with different vegetation types

Aim

This study investigated the effects of environmental variables on the bacterial and fungal communities of the Beilu River (on the Tibetan Plateau) permafrost soils with different vegetation types.

Methods and Results

Microbial communities were sampled from meadow, steppe and desert steppe permafrost soils during May, June, August and November, and they were analysed by both pyrosequencing and the use of Biolog EcoPlates. The dominant bacterial and fungal phyla in meadow and steppe soils were Proteobacteria and Ascomycota, whereas Actinobacteria and Basidiomycota predominated in desert steppe soils. The bacterial communities in meadow soils degraded amines and amino acids very rapidly, while polymers were degraded rapidly by steppe communities. The RDA patterns showed that the microbial communities differed greatly between meadow, steppe and desert steppe, and they were related to variations in the soil moisture, C/N ratio and pH. A UniFrac analysis detected clear differences between the desert steppe bacterial community and others, and seasonal shifts were observed. The fungal UniFrac patterns differed significantly between meadow and steppe soils. There were significant correlations between the bacterial diversity (H′) and soil moisture (r = 0·506) and C/N (r = 0·527). The fungal diversity (Hf′) was significantly correlated with the soil pH (r = 0·541).

Conclusion

The soil moisture, C/N ratio and pH were important determinants of the microbial community structure in Beilu River permafrost soils.

Significance and Impact of the Study

These results may provide a useful baseline for predicting the variation in microbial communities in response to climate changes.     

Nutrients and antinutrient constituents of Amaranthus caudatus L. Cultivated on different soils

This study investigated variations in the concentration of nutrients, antinutrients and mineral content of Amaranthus caudatus harvested from different soil types at various stages of maturity. Four out the five soils namely; sandy clay loam, silty clay loam, clayey loam and loam were experimentally formulated from primary particles of silt, clay and sand in line with the United State Department of Agriculture’s (USDA) soil triangle protocol. The unfractionated soil was used as the control. After harvesting at pre-flowering (61 days after planting), flowering (71 days after planting) and post-flowering (91 days after planting) stages, nutrient and antinutrient analyses were carried out following Association of Official Analytical Chemists (AOAC) and other referenced methods while the Inductively Coupled Plasma- Optical Emission Spectrometer was used to determine mineral compositions of the plant samples. The results of the study revealed that particle size and physicochemical properties of the soil influenced the number of minerals deposited in plant tissues. It was further observed that the nutritional properties of the plant change as plant ages. For an optimal yield of vitamins A and E, clayey loam proved to be the best soil particularly when A. caudatus is harvested before flowering but for vitamin C, sandy clayey loam yielded the highest output at the same stage. Similarly, clayey loam and loam soils yielded the highest proximate compositions at flowering and pre-flowering; however, mineral elements (micro and macro) were highest in control and loam soils.     

Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield

Spatial patterns of microbial communities have been extensively surveyed in well‐developed soils, but few studies investigated the vertical distribution of micro‐organisms in newly developed soils after glacier retreat. We used 454‐pyrosequencing to assess whether bacterial and fungal community structures differed between stages of soil development (SSD) characterized by an increasing vegetation cover from barren (vegetation cover: 0%/age: 10 years), sparsely vegetated (13%/60 years), transient (60%/80 years) to vegetated (95%/110 years) and depths (surface, 5 and 20 cm) along the Damma glacier forefield (Switzerland). The SSD significantly influenced the bacterial and fungal communities. Based on indicator species analyses, metabolically versatile bacteria (e.g. Geobacter) and psychrophilic yeasts (e.g. Mrakia) characterized the barren soils. Vegetated soils with higher C, N and root biomass consisted of bacteria able to degrade complex organic compounds (e.g. Candidatus Solibacter), lignocellulolytic Ascomycota (e.g. Geoglossum) and ectomycorrhizal Basidiomycota (e.g. Laccaria). Soil depth only influenced bacterial and fungal communities in barren and sparsely vegetated soils. These changes were partly due to more silt and higher soil moisture in the surface. In both soil ages, the surface was characterized by OTUs affiliated to Phormidium and Sphingobacteriales. In lower depths, however, bacterial and fungal communities differed between SSD. Lower depths of sparsely vegetated soils consisted of OTUs affiliated to Acidobacteria and Geoglossum, whereas depths of barren soils were characterized by OTUs related to Gemmatimonadetes. Overall, plant establishment drives the soil microbiota along the successional gradient but does not influence the vertical distribution of microbiota in recently deglaciated soils.     

Quantification and correlation of vesicular-arbuscular mycorrhizal propagules with soil properties of some mollisols of northern India

The populations of vesicular-arbuscular mycorrhizae (VAM) propagules by the most probable number method in some mollisols and their correlations with some important soil properties were determined. On average, the six soils, Phoolbagh clay loam, Beni silty clay loam, Haldi loam, Nagla loam, Khamia sandy loam and Patherchatta sandy loam contained 4.9, 4.0, 7.9, 7.9, 3.3 and 13.0 propagules/g soil, respectively, i.e. none of the soils was found to be high in VAM. The size of the VAM population was compared to soil properties such as pH, organic carbon, sand content, available phosphorus and available potassium, cation-exchange capacity, silt and clay contents. A significant positive correlation (r=0.586) was only found with available soil phosphorus (P<0.05) and a significant negative correlation (r=-0.555) with soil clay content (P<0.05).Directorate research paper series No. 7862     

Effects of bio‐based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition

With the projected rise in the global human population, agriculture intensification and land‐use conversion to arable fields is anticipated to meet the food and bio‐energy demand to sustain a growing population. Moving towards a circular economy, agricultural intensification results in the increased re‐investment of bio‐based residues in agricultural soils, with consequences for microbially mediated greenhouse gas (GHG) emission, as well as other aspects of soil functioning. To date, systematic studies to address the impact of bio‐based residue amendment on the GHG balance, including the soil microorganisms, and nutrient transformation in agricultural soils are scarce. Here, we assess the global warming potential (GWP) of in situ GHG (i.e., CO₂, CH₄, and N₂O) fluxes after application of six bio‐based residues with broad C : N ratios (5–521) in two agricultural soils (sandy loam and clay; representative of vast production areas in north‐western Europe). We relate the GHG emission to the decomposability of the residues in a litter bag assay and determined the effects of residue input on crop (common wheat) growth after incubation. The shift in the bacterial community composition and abundance was monitored using IonTorrent^TM sequencing and qPCR, respectively, by targeting the 16S rRNA gene. The decomposability of the residues, independent of C : N ratio, was proportional to the GWP derived from the GHG emitted. The soils harbored distinct bacterial communities, but responded similarly to the residue amendments, because both soils exhibited the highest mean GWP after addition of the same residues (sewage sludge, aquatic plant material, and compressed beet leaves). Our results question the extent of using the C : N ratio alone to predict residue‐induced response in GHG emission. Taken together, we show that although soil properties strongly affect the bacterial community composition, microbially mediated GHG emission is residue dependent.     

Evaluation of Petrifilm™ EC method for enumeration of E. coli from soil

Aims: To evaluate the suitability of commercially available Petrifilm? EC plates for enumeration of Escherichia coli from soil. Methods and Results: A confirmed E. coli strain isolated from liquid swine manure was inoculated into sterilized sandy clay loam and loam soils at the concentrations of 10², 10³, 10⁵ CFU g^?1 of soil. The efficiency of recovery on Petrifilm? EC plates for soils spiked with E. coli was compared with standard membrane filtration techniques on m‐FC basal medium supplemented with 3‐bromo‐4‐chloro‐5‐indoyl‐β‐d ‐glucopyranoside (BCIG) and most probable numbers (MPN) techniques in E. coli medium with 4‐methylumbelliferyl‐β‐d ‐glucuronide (EC‐MUG) broth. Petrifilm? EC and m‐FC (BCIG) methods were then assessed for the ability to recover E. coli from field soils applied with swine manure. No significant differences (P > 0·05) were observed between Petrifilm? EC, m‐FC (BCIG) and MPN methods for the recovery of E. coli from spiked samples, irrespective of soil type. However, recovery of E. coli from manure‐applied field soil samples showed a significant difference (P < 0·05) between the Petrifilm? EC method and the m‐FC method in enumerating E. coli possibly as a result of false positives on m‐FC. Conclusion: The Petrifilm? EC method is suitable for the enumeration of E. coli from soil with a detection limit of 10 CFU g^?1 soil. Significance and Impact of the Study: The commercially available Petrifilm? EC method is comparatively low cost, easy to use method for the enumeration of E. coli from soil without the need for further confirmation tests.     

Impact of microorganisms,humidity, and temperature on the enantioselective degradation of imazethapyr in two soils

Imazethapyr (IM) is a chiral herbicide composed of an (−)‐R‐enantiomer and an (+)‐S‐enantiomer with differential herbicidal activity. In this study, the effects of microbial organisms, humidity, and temperature on the selective degradation of the (−)‐R‐ and (+)‐S‐enantiomers of IM were determined in silty loam (SL) and clay loam (CL) soil with different pH values. The (−)‐R‐enantiomer of IM was preferentially degraded in two soils under different microorganism, humidity, and temperature conditions. The average half‐lives of R‐IM ranged from 43 to 66.1 days and were significantly shorter (P <  0.05) than those of S‐IM, which ranged from 51.4 to 79.8 days. The enantiomer fraction (EF = (+)‐S‐enantiomer/((−)‐R‐enantiomer + (+)‐S‐enantiomer)) values were used to describe the enantioselectivity of degradation of IM were >0.5 (P <  0.05) in two unsterilized soils under different humidity and temperature conditions. The highest EF values were observed at unsterilized CL soil samples under 50% maximum water‐holding capacity (MWHC) and 25 °C environmental conditions. The EF values of the IM enantiomers were significantly higher (P <  0.05) in CL soils (higher pH = 5.81) and were 0.581 (unsterilized) and 0.575 (50% MWHC; 25 °C) compared with those recorded in SL soil (lower pH = 4.85). In addition, this study revealed that microbial organisms preferentially utilized the more herbicidal active IM enantiomer.     

Characterizing cultivable soil microbial communities from copper fungicide-amended olive orchard and vineyard soils

Use of copper-based fungicides has led to an increase in the total Cu content in agriculture soils. The focus of this study was to determine fractionation of Cu and to investigate the structure and the diversity of cultivable bacterial communities in two vineyards (one 25 years old and one 2 years old), one olive orchard and two forest soils. All soils developed on an Oligocene sandstone. The concentration of total Cu in the old vineyard (176.6 mg kg⁻¹) and olive orchard (145.5–296.7 mg kg⁻¹) was from 5 to 10 times higher than in forest soils. The major amount of Cu was found bound to the humic substances in cultivated soils, whereas in forest soils Cu was found in the residual mineral fraction. A relationship was found between the number of cultivable Cu-tolerant bacteria and total Cu content in soil. In the cultivated soils, Cu had a toxicological effect on bacterial community, and thereby Cu-levels > to 145 mg kg⁻¹ could be a risk to soil biota. Microbial communities were analysed by community level physiological profiling (CLPP), using the Biolog system, and by the amplified ribosomal DNA restriction analysis (ARDRA) approach. Only when cell suspensions containing 10⁴ colony-forming units (c.f.u.) were inoculated in each well of Biolog EcoPlates it was possible to discriminate microbial communities from different soil samples. As expected, 16S ARDRA showed that cultivated soils had a lower microbial diversity in respect to forest soils.     

The legacy of bacterial invasions on soil native communities

Soil microbial communities are often not resistant to the impact caused by microbial invasions, both in terms of structure and functionality, but it remains unclear whether these changes persist over time. Here, we used three strains of Escherichia coli O157:H7 (E. coli O157:H7), a species used for modelling bacterial invasions, to evaluate the resilience of the bacterial communities from four Chinese soils to invasion. The impact of E. coli O157:H7 strains on soil native communities was tracked for 120 days by analysing bacterial community composition as well as their metabolic potential. We showed that soil native communities were not resistant to invasion, as demonstrated by a decline in bacterial diversity and shifts in bacterial composition in all treatments. The resilience of native bacterial communities (diversity and composition) was inversely correlated with invader's persistence in soils (R² = 0.487, p < 0.001). Microbial invasions also impacted the functionality of the soil communities (niche breadth and community niche), the degree of resilience being dependent on soil or native community diversity. Collectively, our results indicate that bacteria invasions can potentially leave a footprint in the structure and functionality of soil communities, indicating the need of assessing the legacy of introducing exotic species in soil environments.     

Rhizosphere and non-rhizosphere bacterial community composition of the wild medicinal plant <Emphasis Type="Italic">Rumex patientia</Emphasis>

To investigate bacterial communities between rhizosphere and non-rhizosphere soils of the wild medicinal plant Rumex patientia of Jilin, China, small subunit rRNAs (16S rDNA) from soil metagenome were amplified by polymerase chain reaction using primers specific to the domain bacteria and analysed by cloning and sequencing. The relative proportion of bacterial communities in rhizosphere soils was similar to non-rhizosphere soils in five phylogenetic groups (Proteobacteria, Actinobacteria, Acidobacteria, Chloroflexi and Planctomycetes). But there were differences in five other phylogenetic groups (Firmicutes, Bacteroidetes, Gemmatimonadetes, Verrucomicrobia and Unclassified bacteria). Over 97.24 % of the sequenced clones were found to be unique to rhizosphere and non-rhizosphere soils, while 2.76 % were shared by both of them. Our results indicate that there are differences in the composition and proportion of bacterial communities between rhizosphere and non-rhizosphere soils. Furthermore, the unique bacterial clones between rhizosphere and non-rhizosphere soils of the wild medicinal plant R. patientia have obvious differences.