Complex genetic patterns in closely related colonizing invasive species

Anthropogenic activities frequently result in both rapidly changing environments and translocation of species from their native ranges (i.e., biological invasions). Empirical studies suggest that many factors associated with these changes can lead to complex genetic patterns, particularly among invasive populations. However, genetic complexities and factors responsible for them remain uncharacterized in many cases. Here, we explore these issues in the vase tunicate Ciona intestinalis (Ascidiacea: Enterogona: Cionidae), a model species complex, of which spA and spB are rapidly spreading worldwide. We intensively sampled 26 sites (N = 873) from both coasts of North America, and performed phylogenetic and population genetics analyses based on one mitochondrial fragment (cytochrome c oxidase subunit 3-NADH dehydrogenase subunit I, COX3-ND1) and eight nuclear microsatellites. Our analyses revealed extremely complex genetic patterns in both species on both coasts. We detected a contrasting pattern based on the mitochondrial marker: two major genetic groups in C. intestinalis spA on the west coast versus no significant geographic structure in C. intestinalis spB on the east coast. For both species, geo-graphically distant populations often showed high microsatellite-based genetic affinities whereas neighboring ones often did not. In addition, mitochondrial and nuclear markers provided largely inconsistent genetic patterns. Multiple factors, including random genetic drift associated with demographic changes, rapid selection due to strong local adaptation, and varying propensity for human-mediated propagule dispersal could be responsible for the observed genetic complexities.     

Handling overheads: optimal multi-method invasive species control

Invasive species are a pervasive problem worldwide and considerable resources are directed towards their control. While there are many aspects to invasive species management, deciding how to allocate resources effectively when removing them is critical. There are often multiple control methods available, each with different characteristics. For example aerial baiting has very high overhead costs, while animal trapping incurs a handling time (the trap must be reset after each capture). Here, we examine a particular challenge that managers commonly face when designing eradication programmes—specifically what type of control measure to rely on at different times during the eradication effort? We solve for optimal resource allocation strategies when there are two control methods available and one has overhead costs and the other has a handling time. We find that, if both controls are being used, the control with overhead costs should be used only at the beginning of a project, the other control should be used in the latter part of the project, and that there is generally an overlap where both controls are used. This contrasts with the strategies employed in many eradication projects, where ground control does not begin until aerial baiting has ceased.     

A simple approach to optimal control of invasive species

The problem of invasive species and their control is one of the most pressing applied issues in ecology today. We developed simple approaches based on linear programming for determining the optimal removal strategies of different stage or age classes for control of invasive species that are still in a density-independent phase of growth. We illustrate the application of this method to the specific example of invasive Spartina alterniflora in Willapa Bay, WA. For all such systems, linear programming shows in general that the optimal strategy in any time step is to prioritize removal of a single age or stage class. The optimal strategy adjusts which class is the focus of control through time and can be much more cost effective than prioritizing removal of the same stage class each year.     

Towards management of invasive ectomycorrhizal fungi

Ectomycorrhizal fungi are increasingly recognized as invasive species. Invasive ectomycorrhizal fungi can be toxic to humans, may compete with native, edible or otherwise valuable fungi, facilitate the co-invasion of trees, and cause major changes in soil ecosystems, but also have positive effects, enabling plantation forestry and, in some cases, becoming a valuable food source. Land-managers are interested in controlling and removing invasive fungi, but there are few available strategies for management and none are based on robust scientific evidence. Nonetheless, despite the absence of relevant experiments, we suggest that knowledge of the fundamental ecology of fungi can help guide strategies. We review the literature and suggest potential strategies for prevention, for slowing the spread of invasive fungi, for eradication, and for long-term management. In many cases the most appropriate strategy will be species and context (including country) specific. In order to effectively address the problems posed by invasive ectomycorrhizal fungi, land managers and scientists need to work together to develop and robustly test control and management strategies.     

Loopholes in the regulation of invasive species: genetic identifications identify mislabeling of prohibited aquarium plants

Numerous invasive aquatic species introductions can be traced to the aquarium trade. Many potentially harmful aquarium species may be difficult to identify based on morphology alone. As such, some prohibited or invasive species may be available for purchase if they are mislabeled as species without restrictions. Here we compare molecular identifications to internet vendors’ identifications for accessions of a popular genus of aquarium plants that are difficult to distinguish morphologically (Myriophyllum; watermilfoils). Specifically, we identified the extensive mislabeling of M. heterophyllum—an invasive species in the northeastern and western US. Furthermore, genotypes of M. heterophyllum found in our aquarium survey have also been found in invasive populations, suggesting their potential introduction through escape from aquaria, water gardens, or nurseries. Two additional taxa were sold under incorrect names. Finally, our survey revealed that Myriophyllum taxa present in the aquarium trade generally have poorly known distributions and ecologies, and therefore their invasive potential is unknown. Our study confirms that molecular identification methods can provide a valuable tool to survey commercial pathways for potentially harmful species that are otherwise difficult to identify.     

Biological control of marine invasive species: cautionary tales and land-based lessons

Biological control (biocontrol) has successfully regulated pest populations in terrestrial agroecosystems, but it has also caused negative unintended consequences for native species. Marine biologists and resource managers have recently published a growing number of proposals to include biocontrol in integrated pest management programs in oceans, seas and estuaries. Here, I review six ecologically and taxonomically diverse case studies of marine biocontrol programs at various stages of planning and implementation. Proposals include viral or microbial control of harmful algal blooms, predatory control of the ctenophore Mnemiopsis leidyi in the Black Sea, parasitic regulation of the European green crab Carcinus maenas, castration by ciliates of the seastar Asterias amurensis in Australia, herbivory of the toxic green alga Caulerpa taxifolia in the Mediterranean by sacoglossan sea slugs, and insect biocontrol by the planthopper Prokelesia marginata to ameliorate ecological impacts of the saltmarsh cordgrass Spartina alterniflora. Where data exist, I evaluate these examples in terms of lessons marine invasion biologists can glean from the rich history of terrestrial biocontrol, and explicitly contrast agroecosystems with invaded marine habitats. Host specificity cannot be guaranteed in the marine biocontrol proposals examined. Feasible alternatives to classical biocontrol in the marine realm should be emphasized, including more investment in invasion prevention tools, early detection and eradication while invasions are small, and increased attention to native natural enemies to control exotic pests. Biocontrol in marine habitats is risky: it poses many more uncertainties and has a much sparser history than its counterpart on land.     

Geographic profiling as a novel spatial tool for targeting the control of invasive species

Geographic profiling (GP) was originally developed as a statistical tool in criminology, where it uses the spatial locations of linked crimes (for example murder, rape or arson) to identify areas that are most likely to include the offender's residence. The technique has been successful in this field, and is now widely used by police forces and investigative agencies around the world. Here, we show that this novel technique can also be used to identify source populations of invasive species, using their current locations as input, as a prelude to targeted control measures. Our study has two main parts. In the first, we use computer simulations to compare GP to other simple measures of spatial central tendency (centre of minimum distance, spatial mean, spatial median), as well as to a more sophisticated single parameter kernel density model. GP performs significantly better than any of these other approaches. In the second part of the study, we analyse historical data from the Biological Records Centre (BRC) for 53 invasive species in Great Britain, ranging from marine invertebrates to woody trees, and from a wide variety of habitats (including littoral habitats, woodland and man‐made habitats). For 52 of these 53 data sets, GP outperforms spatial mean, spatial median and centre of minimum distance as a search strategy, particularly as the number of sources (or potential sources) increases. We analyse one of these data sets, for Heracleum mantegazzianum, in more detail, and show that GP also outperforms the kernel density model. Finally, we compare fitted parameter values between different species, groups and habitat types, with a view to identifying general values that might be used for novel invasions where data are lacking. We suggest that geographic profiling could potentially form a useful component of integrated control strategies relating to a wide variety of invasive species.     

Differential invasion success in aquatic invasive species: the role of within- and among-population genetic diversity

Despite a well-developed theoretical basis for the role of genetic diversity in the colonization process, contemporary investigations of genetic diversity in biological invasions have downplayed its importance. Observed reductions in genetic diversity have been argued to have a limited effect on the success of establishment and impact based on empirical studies; however, those studies rarely include assessment of failed or comparatively less-successful biological invasions. We address this gap by comparing genetic diversity at microsatellite loci for taxonomically and geographically paired aquatic invasive species. Our four species pairs contain one highly successful and one less-successful invasive species (Gobies: Neogobius melanostomus, Proterorhinus semilunaris; waterfleas: Bythotrephes longimanus, Cercopagis pengoi; oysters: Crassostrea gigas, Crassostrea virginica; tunicates: Bortylloides violaceous, Botryllus schlosseri). We genotyped 2717 individuals across all species from multiple locations in multiple years and explicitly test whether genetic diversity is lower for less-successful biological invaders within each species pair. We demonstrate that, for gobies and tunicates, reduced allelic diversity is associated with lower success of invasion. We also found that less-successful invasive species tend to have greater divergence among populations. This suggests that intraspecific hybridization may be acting to convert among-population variation to within-population variation for highly successful invasive species and buffering any loss of diversity. While our findings highlight the species-specific nature of the effects of genetic diversity on invasion success, they do support the use of genetic diversity information in the management of current species invasions and in the risk assessment of potential future invaders.     

Population genetic structure of the round goby in Lake Michigan: implications for dispersal of invasive species

Understanding subsequent dispersal of non-native species following introduction is important for predicting the extent and speed of range expansion and is critical for effective management and risk assessment. Post-introduction dispersal may occur naturally or via human transport, but assessing the relative contribution of each is difficult for many organisms. Here, we use data from seven microsatellite markers to study patterns of dispersal and gene flow among 12 pierhead populations of the round goby (Neogobius melanostomus) in Lake Michigan. We find significant population structure among sampling sites within this single Great Lake: (1) numerous populations exhibited significant pairwise F _ST and (2) a Bayesian assignment analysis revealed three distinct genetic clusters, corresponding to different pierhead locations, and genetic admixture between these clusters in the remaining populations. Genetic differentiation (F _ST) is generally related to geographic distance (i.e., isolation by distance), but is periodically interrupted at the scale of Lake Michigan due to gene flow among geographically distant sites. Moreover, average genetic differentiation among populations exhibit a significant, negative correlation with the amount of shipping cargo at ports. Our results, therefore, provide evidence that genetic structure of the round goby in Lake Michigan results from limited natural dispersal with frequent long-distance dispersal through anthropogenic activities such as commercial shipping. Our study suggests that while round gobies can undoubtedly disperse and found new populations through natural dispersal mechanisms, their spread within and among the Great Lakes is likely aided by transport via ships. We, therefore, recommend that ballast-water treatment and management may limit the spread of non-native species within the Great Lakes after the initial introduction in addition to preventing the introduction of non-native species to the Great Lakes.     

Impacts of biological control and invasive species on a non-target native Hawaiian insect

The potential for classical biological control to cause unintended harm to native species was evaluated in the case of the endemic Hawaiian koa bug, Coleotichus blackburniae White (Hemiptera: Scutelleridae), and parasitoids introduced to Hawaii for control of an agricultural pest, the southern green stink bug, Nezara viridula (L.) (Hemiptera: Pentatomidae). Parasitism of C. blackburniae eggs, nymphs and adults by biocontrol agents was quantified across a wide range of habitats and compared to other sources of mortality. Egg mortality due to the biocontrol agent Trissolcus basalis Wollaston (Hymenoptera: Scelionidae) was low (maximum 26%) and confined to elevations below 500 m on a single host plant. Predation, mainly by alien spiders and ants, was the greatest source of egg mortality (maximum 87%). Parasitism of adult C. blackburniae by the biocontrol agent Trichopoda pilipes (F.) (Diptera: Tachinidae) was near zero at 21 of 24 sites surveyed. Three sites with high bug density had higher levels of T. pilipes parasitism, reaching maxima of 70% among adult female bugs, 100% among males and 50% among fifth instars. Male-biased parasitism indicated that T. pilipes is adapted to using male aggregation pheromone for finding C. blackburniae hosts. The relative impacts of biocontrol agents and other sources of mortality were compared using life tables. Invasive species, particularly generalist egg predators, had the greatest impacts on C. blackburniae populations. Effects of intentionally introduced parasitoids were relatively minor, although the tachinid T. pilipes showed potential for large impacts at individual sites. In retrospect, non-target attacks by biological control agents on C. blackburniae were predictable, but the environmental range and magnitude of impacts would have been difficult to foresee.     

A peculiar relationship between genetic diversity and adaptability in invasive exotic species: bluegill sunfish as a model species

A peculiar relationship exists between population genetics and invasion biology. Introduced populations often suffer a depletion of genetic variation, but they can persist and adapt to new environments. Here, we show that this relationship is observed in bluegill sunfish (Lepomis macrochirus), an invasive exotic fish in Japan. Genetic analysis using selectively neutral genetic markers reconfirmed that the bluegill introduced into Japan from the United States in 1960 had a single origin with only 15 founders. The analysis also shows that in the process of range expansion, the introduced bluegills experienced severe depletion of genetic diversity due to the founder effect and/or genetic drift. Despite such a decline in genetic diversity, the bluegill populations exhibited a divergent feeding morphology in response to the colonized environments. Such a morphological divergence can facilitate prey exploitation, thereby causing a greater negative impact on native prey resources. Further, in a trophically polymorphic bluegill population in Lake Biwa, physiological characteristics and genetic structures of the intestinal bacterial communities were associated with the difference in diet among the trophic morphs in the host bluegill population. This empirical evidence suggests that despite the severe decline in genetic diversity, the introduced bluegill populations rapidly adapted to the new environment and formed diverse functional relationships with the native bacterial community. Thus, these findings suggest that genetic variation at selectively neutral markers does not always predict adaptability and invasiveness in introduced populations.     

Adaptive evolution in invasive species

Many emerging invasive species display evidence of rapid adaptation. Contemporary genetic studies demonstrate that adaptation to novel environments can occur within 20 generations or less, indicating that evolutionary processes can influence invasiveness. However, the source of genetic or epigenetic variation underlying these changes remains uncharacterised. Here, we review the potential for rapid adaptation from standing genetic variation and from new mutations, and examine four types of evolutionary change that might promote or constrain rapid adaptation during the invasion process. Understanding the source of variation that contributes to adaptive evolution in invasive plants is important for predicting future invasion scenarios, identifying candidate genes involved in invasiveness, and, more generally, for understanding how populations can evolve rapidly in response to novel and changing environments.     

入侵植物美洲商陆的传粉生态学特性

从开花物候、花朵数量性状、花粉活力、花粉组织化学、柱头可授性、花粉在柱头上的萌发状况、杂交指数、花粉胚珠比、传粉媒介以及繁育系统等方面,研究了外来入侵植物美洲商陆(Phytolacca americana)的传粉生态学特性,为揭示该物种成功入侵的机理提供依据.结果表明:美洲商陆种群花期可达45~70 d,单花花期为2~3d,可进一步分为杯状花期、花瓣平展期、花瓣下垂期、花瓣反卷期;花冠直径在下垂期最大且不超过1 cm,花药与柱头间距离在1 ~2.5 mm,有利于自交的发生;花瓣平展期与花瓣下垂期花粉活力差异显著(P<0.05),杯状花期与花瓣平展期花粉活力差异不显著(P>0.05),花瓣平展期花粉活力可达85%;雌蕊柱头可授性在花瓣平展期最强;杯状花期合生柱头开裂,花瓣平展期柱头9~ 10裂,接受花粉的表面积增大;花药散粉时间与合生柱头开裂时间相吻合,有助于柱头接受花粉;扫描电镜下观察到花粉在花瓣平展期的柱头上已萌发;每朵花可提供1667~3222粒花粉,胚珠9~10个,花粉胚珠比(P/O)为340.88±34.99,表现为兼性自交;美洲商陆杂交指数(OCI)为3,花粉粒属于含脂型,主要传粉昆虫有蜜蜂、胡蜂、食蚜蝇、细腰蜂.综上所述,美洲商陆自交亲和,花粉活力高、柱头可授性强,且高花粉活力与强柱头可授性出现在相同的时期,增加了花粉落置柱头及在柱头上萌发的几率;虫媒花,访花者行为与花朵相适应,有利于提高坐果率,这样的繁殖机制与传粉特点是美洲商陆成功入侵的主要因素之一.     

Towards accurate imputation of quantitative genetic interactions

Recent technological breakthroughs have enabled high-throughput quantitative measurements of hundreds of thousands of genetic interactions among hundreds of genes in Saccharomyces cerevisiae. However, these assays often fail to measure the genetic interactions among up to 40% of the studied gene pairs. Here we present a novel method, which combines genetic interaction data together with diverse genomic data, to quantitatively impute these missing interactions. We also present data on almost 190,000 novel interactions.     

Modelling the damage costs of invasive alien species

Biological Invasions - The rate of biological invasions is growing unprecedentedly, threatening ecological and socioeconomic systems worldwide. Quantitative understandings of invasion temporal...