Evaluation of data consistency and estimation of yield parameters in hydrocarbon fermentations

The consistency of experimental data for hydrocarbon fermentations is reviewed using carbon and available electron balances and the mean values of the regularities for carbon weight fraction in biomass and biomass reductance degree. True growth yields and maintenance coefficients are estimated from both batch and continuousculture data and the results are compared.     

Estimation of rates of oxygen uptake and carbon dioxide evolution of animal cell culture using material and energy balances

Material and degree of reductance balance equations are used to estimate the rates of oxygen uptake and carbon dioxide evolution of animal cell cultures. Lumped compositions, molecular weight and reductance degree of cellular protein, monoclonal antibody, biomass and amino acid consumption (excluding glutamine and alanine) are found to be relatively constant for different hybridoma cell lines and may be used as regularities. The calculated rates of oxygen uptake and carbon dioxide evolution agree well with experimental values of several different cultures reported in the literature. This simple method gives the same results as calculated on the basis of a detailed metabolic reaction network. This revised version was published online in July 2006 with corrections to the Cover Date.     

Studies on on-line bioreactor identification. III. Sensitivity problems with respiratory and heat evolution measurements

The applicability of the respiratory quotient measurement, a heat evolution measurement, and a commonly observed correlation between the respiratory quotient and product yield to on-line bioreactor identification and control were inspected. It was found that singularities can exist in macroscopic balances used in connection with these measurements or the correlation, rendering them inappropriate for process parameter identification. By the formulation of generalized metabolic pathways together with NADH(2) and ATP balances, general rules were derived for identifying conditions causing singularities. Thus it was found that, in addition to other less probable situations, the RQ measurement becomes impractical when the degree of reductance of the substrate is identical to that of the product, if any, and close to that of biomass. The correlation always presents sensitivity problems because it is nearly a linear combination of the elemental balances and the balance arising from the definition of the respiratory quotient. The heat evolution measurement nearly always presents sensitivity problems because of a linear dependence between the enthalpy balance and the degree of reductance, or NADH(2), balance due to the regularity that the degrees of reductance of most biological compounds are proportional to their heats of combustion. Problems are considered and suggestions made for replacing the measurements, when inapplicable, or the correlation with an ATP balance. Experimental results and numerical studies on the fermentations of yeast and E. coli support the theoretically derived rules.     

Functional significance of genetically different symbiotic algae Symbiodinium in a coral reef symbiosis

The giant sea anemone Condylactis gigantea associates with members of two clades of the dinoflagellate alga Symbiodinium, either singly or in mixed infection, as revealed by clade-specific quantitative polymerase chain reaction of large subunit ribosomal DNA. To explore the functional significance of this molecular variation, the fate of photosynthetically fixed carbon was investigated by (14)C radiotracer experiments. Symbioses with algae of clades A and B released ca. 30-40% of fixed carbon to the animal tissues. Incorporation into the lipid fraction and the low molecular weight fraction dominated by amino acids was significantly higher in symbioses with algae of clade A than of clade B, suggesting that the genetically different algae in C. gigantea are not functionally equivalent. Symbioses with mixed infections yielded intermediate values, such that this functional trait of the symbiosis can be predicted from the traits of the contributing algae. Coral and sea anemone symbioses with Symbiodinium break down at elevated temperature, a process known as 'coral bleaching'. The functional response of the C. gigantea symbiosis to heat stress varied between the algae of clades A and B, with particularly depressed incorporation of photosynthetic carbon into lipid of the clade B algae, which are more susceptible to high temperature than the algae of clade A. This study provides a first exploration of how the core symbiotic function of photosynthate transfer to the host varies with the genotype of Symbiodinium, an algal symbiont which underpins corals and, hence, coral reef ecosystems.     

Effects of free amino acids on the isolated symbiotic algae of the coral Plesiastrea versipora (Lamarck): absence of a host release factor response

Symbiotic algae incubated in host tissue homogenate of the coral Plesiastrea versipora for 2 h in the light released at least four and a half times as much photosynthetically fixed carbon (range 13.8±3.1 to 158±9.5 nmol C/10⁶ algae) as algae incubated in seawater (range 1.4±0.3 to 10.8±0.6 nmol C/10⁶ algae) indicating the presence of ‘host release factor’. When algae were incubated in a low molecular weight fraction of homogenate containing partially purified ‘host release factor’ they also released more carbon (range 62.2±3.7 to 279±11.4 nmol C/10⁶ algae) than algae incubated in seawater. This low molecular weight fraction contained free amino acids. We tested the hypothesis that the free amino acids in this fraction were responsible for ‘host release factor’ activity. Algae incubated in a mixture of free amino acids equivalent to those found in this fraction, released more fixed carbon (range 2.4±0.3 to 25.2±0.2 nmol C/10⁶ algae) than algae incubated in seawater but in each experiment, release was much lower than when algae were incubated in host tissue homogenate. These data indicate that the stimulation of release of photosynthetically fixed carbon from the symbiotic algae of Plesiastrea versipora incubated in partially purified host release factor is not primarily due to the presence of free amino acids. We are continuing further studies to determine the exact nature of the active compound.     

Expanded thermodynamic model for microbial true yield prediction

Thermodynamic methods to predict true yield and stoichiometry of bacterial reactions have been widely used in biotechnology and environmental engineering. However, yield predictions are often inaccurate for certain simple organic compounds. This work evaluates an existing method and identifies the cause of prediction errors for compounds with low degree of reductance of carbon. For these compounds, carbon, not energy or reducing equivalents, constrains growth. Existing thermodynamically-based models do not account for the potential of carbon-limited growth. The improved method described here consists of four balances: carbon balance, nitrogen balance, electron balance, and energy balance. Two efficiency terms, K1 and K2 are defined and estimated from a priori analysis. The results show that K1 and K2 are nearly the same in value so that only one coefficient, K = 0.41 is used in the modified model. Comparisons with observed yields show that use of the new model and parameters results in significantly improved yield estimation based on inclusion of the carbon balance. The average estimation error is less than 6% for the data set presented.     

Effects of nitrogen limitation on the growth and composition of unicellular algae in continuous culture

Since fat accumulation takes place in many algae as a response to exhaustion of the nitrogen supply, it has been suggested that this may provide a means of enhancing the potential food value of algae. To test this possibility, chemostatic continuous cultures of Chlorella sorokiniana and Oocystis polymorpha were subjected to successive reductions in influent nitrogen. As cellular nitrogen content decreased from about 10 to 4%, oxygen evolution, carbon dioxide uptake, chlorophyll content, and tissue production were drastically reduced, but total lipid content was essentially unchanged. Caloric values and C, H, and N analyses suggested a moderate increase in carbohydrate content, but gas chromatographic analyses revealed no significant qualitative or quantitative changes in the fatty acid fraction. In batch-cultured cells, nitrogen could be reduced to 3% of dry weight, causing a concomitant increase in total fatty acids and pronounced changes in the composition of the fatty acid fraction. These results suggest that cellular nitrogen must fall to approximately 3% of dry weight before appreciable increases in lipid synthesis can occur. Cell nitrogen is then apparently completely bound in essential cell constituents, and carbon subsequently fixed is converted into lipid products. The findings indicate that nitrogen limitation may be useful in increasing the food quality of batch-cultured cells, but the technique has little value for continuous culture systems per se.     

Estimation of heats of combustion of biomass from elemental analysis using available electron concepts

The method of Thornton and Dulong's formula for estimating heats of combustion are compared in this work. Heats of combustion predicted by Thornton's method for renewable resources such as wood, straw, and municipal solid wastes are considerably closer to experimentally measured values compared to values predicted by Dulong's formula. Thornton's method states that the heat of combustion is directly proportional to the quantity of oxygen consumed in the combustion process. A method which utilizes the weight fraction carbon on a dry basis and the reluctance degree to predict the heat of combustion of renewable resources is presented.     

SEASONAL VARIATIONS IN TOTAL NITROGEN,CARBON AND AMINO ACIDS IN MACROCYSTIS INTEGRIFOLIA AND NEREOCYSTIS LUETKEANA (PHAEOPHYTA)1

Seasonal variations in tissue nitrogen, carbon, amino acids and ammonium were determined for the brown algae Macrocystis integrifolia Bory and Nereocystis luetkeana (Mertens) Pastels and Ruprecht, For M. integrifolia, the proportions of tissue nitrogen and carbon in blades, bulbs and stipes were also determined. The composition of the two algae in terms of the above constituents was similar. In addition, ammonium, nitrogen and protein-bound amino acids showed distinct seasonal trends with high values during the winter and low levels during the summer. The range for nitrogen was 0.8–3.0% and for proteins 7.6–11.7% of dry weight. In contrast, carbon content and C/N ratio showed the reverse trend with higher values during the summer and lower values during the winter. The range for carbon was 19–31% of dry weight, and the C/N ratio showed a range of 9–37. The free amino acids did not show any specific seasonably. Tissue nitrogen and carbon showed higher values in the blades than in the bulbs and stipes.     

Microbial fucoidan degradation by Luteolibacter algae H18 with deacetylation

A bacterial strain that assimilates fucoidan from Cladosiphon okamuranus as sole carbon source was isolated as Luteolibacter algae H-18. It was found that it degraded fucoidan by intracellular enzymes, and that the degradation reactions were catalyzed by multiple enzymes. One enzyme, designated fraction B, was established to exhibit the deacetylation reaction of fucoidan. Other enzyme(s), designated fraction A, catalyzed the reaction(s) lowering the molecular weight of fucoidan.     

Isotopic relationships between saponifiable lipids and cellulose nitrate prepared from red,brown and green algae

Stable carbon and hydrogen isotope ratios were determined for the saponifiable lipid fraction as well as the cellulose fraction (the latter after nitration to remove exchangeable hydrogens) of several species of red, brown and green algae from three locations. A significant correlation was observed between the hydrogen isotope ratios of cellulose nitrate and saponifiable lipid for red algae, but not for brown or green algae. Carbon-13/carbon-12 ratios for both fractions of red algae were in general lower than those observed for brown and green algae. The results reported here are consistent with the proposals that red algae evolved much earlier than and are metabolically different from the brown and green algae.Abbreviations and symbols CAM Crassulacean acid metabolism - C₃ photosynthetic mode in plants in which CO₂ is fixed into a three-carbon compound - C₄ photosynthetic mode in plants in which CO₂ is fixed into a four-carbon compound - unit used to express isotope ratios Also Archaeology Program, UCLA     

Comparative analysis of the chemical composition of mixed and pure cultures of green algae and their decomposed residues by C nuclear magnetic resonance spectroscopy

It is known that macromolecular organic matter in aquatic environments, i.e., humic substances, is highly aliphatic. These aliphatic macromolecules, predominantly paraffinic in structure, are prevalent in marine and lacustrine sediments and are believed to originate from algae or bacteria. A comparative study of mixed and pure cultures of green algae and their decomposed residues was performed by using solid-state C nuclear magnetic resonance spectroscopy as the primary analytical method. Results obtained in this study confirm the presence of components that are chemically refractory and that are defined as alghumin and hydrolyzed alghumin. These were detected in heterogeneous, homogeneous, and axenic biomasses composed of several genera of Chlorophyta. Although the chemical composition of algal biomass varied with culture conditions, the chemical structure of the alghumin and hydrolyzed alghumin, demonstrated by C nuclear magnetic resonance spectroscopy appeared to be constant for members of the Chlorophyta examined in this study. The alghumin was dominated by carbohydrate-carbon, with minor amounts of amide or carboxyl carbon and paraffinic carbon, the latter surviving strong hydrolysis by 6 N HCI (hydrolyzed alghumin). Bacterial decomposition of heterogeneous algal biomass labeled with C was conducted under both aerobic and anaerobic conditions to determine chemical structure and stability of the refractory material. The refractory fraction ranged from 33% in aerobic to 44% in anaerobic cultures. The refractory fraction recovered from either aerobic or anaerobic degradation comprised 40% alghumin, which represented an enrichment by 10% relative to the proportion of alghumin derived from whole cells of algae. The paraffinic component in the hydrolyzed alghumin of whole algal cells was found to be 1.8% and increased to 5.1 and 6.9% after aerobic and anaerobic bacterial degradation, respectively. It is concluded that members of the Chlorophyta contain a common insoluble structure composed of paraffinic carbon that is resistant to chemical and bacterial degradation under conditions used in this study. The paraffinic structure is identical to those constituting humin of aquatic origin. Thus, alga-derived macromolecular compounds deposited in aquatic environments (alghumin) probably contribute to sedimentary humic substances.     

无机碳供应与光照条件对坛紫菜光合功能的影响

海藻群体密度过大常引起海水中CO_2供应和光照强度降低,为探讨这两种环境条件对坛紫菜光合作用的影响,在4种条件下培养坛紫菜,即390μL·L^-1(正常空气)+全日光、20μL·L^-1(低CO_2供应)+全日光、390μL·L^-1+低日光(光照强度为全日光的20%)、20μL·L^-1+低日光,测定藻体的碳酸酐酶活性、光合速率,以及不同温度下开放状态光系统Ⅱ最大量子产量(F_ v'/F _m').结果表明:低CO_2供应和低日光下生长的坛紫菜具有较高的碳酸酐酶活性,并且低日光能够提高海藻最大碳饱和光合放氧速率(V _max).在低日光下,生长在低CO_2海水中的坛紫菜V _max显著低于正常CO_2海水中生长的海藻V _max;在全日光下,低CO_2下生长的海藻V _max却高于正常CO_2下生长的海藻V _max.生长在低CO_2和低日光条件下的海藻在低温(10℃)和高温(30℃)下,藻体的F_ v'/F _m'变化不明显;而生长在390μL·L^-1+全日光环境中的海藻在高温环境下200 min后,藻体的F_ v'/F _m'相比40 min时的F_ v'/F _m'降低76.4%.低CO_2和低日光提高坛紫菜光合无机碳利用能力以及适应短期温度变化的能力,而低CO_2对海藻光合速率的影响与海藻所处光照环境有关.     

Comparative Analysis of the Chemical Composition of Mixed and Pure Cultures of Green Algae and Their Decomposed Residues by 13C Nuclear Magnetic Resonance Spectroscopy

It is known that macromolecular organic matter in aquatic environments, i.e., humic substances, is highly aliphatic. These aliphatic macromolecules, predominantly paraffinic in structure, are prevalent in marine and lacustrine sediments and are believed to originate from algae or bacteria. A comparative study of mixed and pure cultures of green algae and their decomposed residues was performed by using solid-state ¹³C nuclear magnetic resonance spectroscopy as the primary analytical method. Results obtained in this study confirm the presence of components that are chemically refractory and that are defined as alghumin and hydrolyzed alghumin. These were detected in heterogeneous, homogeneous, and axenic biomasses composed of several genera of Chlorophyta. Although the chemical composition of algal biomass varied with culture conditions, the chemical structure of the alghumin and hydrolyzed alghumin, demonstrated by ¹³C nuclear magnetic resonance spectroscopy appeared to be constant for members of the Chlorophyta examined in this study. The alghumin was dominated by carbohydrate-carbon, with minor amounts of amide or carboxyl carbon and paraffinic carbon, the latter surviving strong hydrolysis by 6 N HCI (hydrolyzed alghumin). Bacterial decomposition of heterogeneous algal biomass labeled with ¹³C was conducted under both aerobic and anaerobic conditions to determine chemical structure and stability of the refractory material. The refractory fraction ranged from 33% in aerobic to 44% in anaerobic cultures. The refractory fraction recovered from either aerobic or anaerobic degradation comprised 40% alghumin, which represented an enrichment by 10% relative to the proportion of alghumin derived from whole cells of algae. The paraffinic component in the hydrolyzed alghumin of whole algal cells was found to be 1.8% and increased to 5.1 and 6.9% after aerobic and anaerobic bacterial degradation, respectively. It is concluded that members of the Chlorophyta contain a common insoluble structure composed of paraffinic carbon that is resistant to chemical and bacterial degradation under conditions used in this study. The paraffinic structure is identical to those constituting humin of aquatic origin. Thus, alga-derived macromolecular compounds deposited in aquatic environments (alghumin) probably contribute to sedimentary humic substances.     

The effect of light on nitrate and nitrite assimilation by chlorella and ankistrodesmus

Light stimulates the assimilation of nitrate and nitrite by two green algae, Chlorella pyrenoidosa and Ankistrodesmus braunii. Assimilation can be observed when the algae are illuminated in the absence of carbon dioxide under both aerobic and anaerobic conditions. The rates of assimilation by Chlorella do not depend on the presence of carbon dioxide, but Ankistrodesmus assimilates nitrate and nitrite more rapidly when cultures are illuminated in the presence of carbon dioxide than in its absence. The ratios of O(2) : NO(3') and O(2) : NO(2') vary from one experiment to the other and, with the exception of Chlorella cultures reducing nitrite they are higher than the 'expected' values of 2.0 and 1.5 respectively. Oxygen evolution accompanying nitrate and nitrite by algae illuminated in the absence of carbon dioxide is completely inhibited by DCMU at concentrations of 4 × 10(-6) M. However, nitrite assimilation by both Ankistrodesmus and Chlorella and nitrate assimilation by Ankistrodesmus are less sensitive to the inhibitor.     

Effects of light, dissolved organic carbon, and inorganic nutrients [2pt] on the relationship between algae and heterotrophic bacteria in stream periphyton

Depending on the chemical and physical environment, algae and heterotrophic bacteria in stream periphyton communities likely engage in both positive and negative interactions. We tested the hypothesis that bacteria are more closely associated with algae when allochthonous sources of labile DOC are low and algae are not light limited. Secondly, we tested the hypothesis that, under extremely oligotrophic conditions, bacteria will out-compete algae for inorganic nutrients if their carbon requirements are met by allochthonous sources. Experiments were carried out using in situ light manipulations and nutrient diffusing substrates (releasing inorganic nutrients and /or glucose) in Harts Run, an oligotrophic stream located in north central Kentucky. Although we found that both algal and bacterial biomass were higher under ambient light, bacteria did not respond to glucose in the dark. This may indicate that bacteria were associated with algae not as a carbon source, but as a substrate for colonization. In the nutrient × glucose manipulation, we found that bacteria were co-limited by inorganic nutrients. There was no evidence of algae being negatively affected by competition with bacteria for nitrogen and phosphorus. Although low temperatures might have played a role in preventing inorganic nutrient competition between these two groups of organisms, the results of both experiments may indicate that the quantitative link between periphytic bacteria and algae is stronger under oligotrophic conditions.     

δ13C variability of benthic algae: effects of water colour via modulation by stream current

1. Increased water motion is expected to reduce boundary layer diffusion resistance of autotrophs, thereby enabling greater isotopic discrimination against ¹³C such that lower δ¹³C values (ratio of ¹³C : ¹²C) should ensue. A field test of this hypothesis was undertaken by sampling benthic algae in streams of differing current speed.
2. Contrary to the expected negative relationship between δ¹³C and water motion, filamentous benthic algae were found to exhibit higher δ¹³C values in rapid water.
3. Under conditions of low current in the streams studied, concentrations of dissolved organic carbon as measured by water colour are elevated through the microbial decomposition of largely terrestrial organic matter. Photoassimilation of this respired carbon by benthic filamentous algae generates ¹³C‐depletion and lower δ¹³C values, and appears to be substantial enough in the streams used in the present study to override the competing influence of water motion on boundary layer thickness.     

Photosynthetic characteristics of charophytes from tropical lotic ecosystems

Responses of photosynthetic rates, determined by oxygen evolution using the light and dark bottles technique, to different temperatures, irradiances, pH, and diurnal rhythm were analyzed under laboratory conditions in four charophyte species (Chara braunii Gmelin, C. guairensis R. Bicudo, Nitella subglomerata A. Braun and Nitella sp.) from lotic habitats in southeastern Brazil. Parameters derived from the photosynthesis versus irradiance curves indicated affinity to low irradiances for all algae tested. Some degree of photoinhibition, [β= ‐(0.30–0.13) mg O2 g^?1 dry weight Ir¹ (μmol photons m^?2 s^?1)^?1], low light compensation points (I_c= 4–20 μmol photons m^?2 s^?1) were found for all species analyzed, as well as low values of light saturation parameter (I_k) and saturation (I_s) 29–130 and 92–169 μmol photons m^?2 s^?1, respectively. Photoacclimation was observed in two populations of N. subglomerata collected from sites with different irradiances, consisting of variations in photosynthetic parameters (higher values of a, and lower of I_k and maximum photosynthetic rate, P_max, in the population under lower irradiance). The highest photosynthetic rates for Chara species were observed at 10–15°C, while for Nitella the highest photosynthetic rate was observed at 20–25°C, despite the lack of significant differences among most levels tested. Rates of dark respiration significantly increase with temperature, with the highest values at 25°C. The results from pH experiments showed highest photosynthetic rates under pH 4.0 for all algae, suggesting higher affinity for inorganic carbon in the form of carbon dioxide, except in one population of N. subglomerata, with similar rates under the three levels, suggesting indistinct use of bicarbonate and carbon dioxide. Diurnal changes in photosynthetic rates revealed a general pattern for most algae tested, which was characterized by two peaks: the first (higher) during the morning (07.00–11.00) and the second (lower) in the afternoon (14.00–17.00). This suggests an endogenous rhythm determining the daily variations in photosynthetic rates.     

Scope for use of stable carbon isotopes in discerning the incorporation of forest detritus into aquatic foodwebs

Stable isotope analysis of carbon has been proposed as a means for discerning the incorporation of terrestrial forest detritus into aquatic foodwebs, and as such, has the potential to be used as a biomonitor of the aquatic effects of riparian deforestation. A synthesis of ¹³C/¹²C data from the literature indicates, however, that the scope for successful use of carbon isotope analysis in separating allochthonous and autochthonous food provenance is much more limited than was once thought. This occurs due the overlap in carbon isotope ratios between terrestrial forest detritus and those of both lotic attached algae and lentic filamentous attached algae. Only within rockyshored, oligotrophic lakes without macrophytes, and forest-fringed estuaries and lagoons, where the carbon isotope ratios for attached algae and forest detritus are significantly different, is there any likelihood of discerning the incorporation of allochthonous carbon into aquatic foodwebs using ¹³C/¹²C values alone.     

Photosynthetic performance of freshwater Rhodophyta in response to temperature, irradiance, pH and diurnal rhythm

Responses of net photosynthetic rates to temperature, irradiance, pH/inorganic carbon and diurnal rhythm were analyzed in 15 populations of eight freshwater red algal species in culture and natural conditions. Photosynthetic rates were determined by oxygen concentration using the light and dark bottles technique. Parameters derived from the photosynthesis–irradiance curves indicated adaptation to low irradiance for all freshwater red algae tested, confirming that they tend to occur under low light regimes. Some degree of photo‐inhibition (β= ‐0.33–0.01 mg O₂ g^?1 DW h^?1 (μmol photons m^?2 s^?1)^?1) was found for all species/populations analyzed, whereas light compensation points (Ic) were very low (≤ 2 μmol photons m‐ photons s^?1) for most algae tested. Saturation points were low for all algae tested (Ik = 6–54 μmol photons m^?2 s^?1; Is = 20–170 umol photons m^?2 s^?1). Rates of net photosynthesis and dark respiration responded to the variation in temperature. Optimum temperature values for net photosynthesis were variable among species and populations so that best performances were observed under distinct temperature conditions (10, 15, 20 or 25°C). Rates of dark respiration exhibited an increasing trend with temperature, with highest values under 20–25°C. Results from pH experiments showed best photosynthetic performances under pH 8.5 or 6.5 for all but one species, indicating higher affinity for inorganic carbon as bicarbonate or indistinct use of bicarbonate and free carbon dioxide. Diurnal changes in photosynthetic rates revealed a general pattern for all algae tested, which was characterized by two relatively clear peaks, with some variations around it: a first (higher) during the morning (07.00–11.00 hours.) and a second (lower) in the afternoon (14.00–18.00 hours). Comparative data between the ‘Chantransia’ stage and the respective gametophyte for one Batrachospermum population revealed higher values (ca 2‐times) in the latter, much lower than previously reported. The physiological role of the ‘Chantransia’ stage needs to be better analyzed.