Landscape Patterns in Rainforest Phylogenetic Signal: Isolated Islands of Refugia or Structured Continental Distributions?

Objectives

Identify patterns of change in species distributions, diversity, concentrations of evolutionary history, and assembly of Australian rainforests.

Methods

We used the distribution records of all known rainforest woody species in Australia across their full continental extent. These were analysed using measures of species richness, phylogenetic diversity (PD), phylogenetic endemism (PE) and phylogenetic structure (net relatedness index; NRI). Phylogenetic structure was assessed using both continental and regional species pools. To test the influence of growth-form, freestanding and climbing plants were analysed independently, and in combination.

Results

Species richness decreased along two generally orthogonal continental axes, corresponding with wet to seasonally dry and tropical to temperate habitats. The PE analyses identified four main areas of substantially restricted phylogenetic diversity, including parts of Cape York, Wet Tropics, Border Ranges, and Tasmania. The continental pool NRI results showed evenness (species less related than expected by chance) in groups of grid cells in coastally aligned areas of species rich tropical and sub-tropical rainforest, and in low diversity moist forest areas in the south-east of the Great Dividing Range and in Tasmania. Monsoon and drier vine forests, and moist forests inland from upland refugia showed phylogenetic clustering, reflecting lower diversity and more relatedness. Signals for evenness in Tasmania and clustering in northern monsoon forests weakened in analyses using regional species pools. For climbing plants, values for NRI by grid cell showed strong spatial structuring, with high diversity and PE concentrated in moist tropical and subtropical regions.

Conclusions/Significance

Concentrations of rainforest evolutionary history (phylo-diversity) were patchily distributed within a continuum of species distributions. Contrasting with previous concepts of rainforest community distribution, our findings of continuous distributions and continental connectivity have significant implications for interpreting rainforest evolutionary history and current day ecological processes, and for managing rainforest diversity in changing circumstances.     

Distributional patterns of herpetofauna in monsoon rainforests of the Northern Territory,Australia

Abstract The herpetofauna of 50 monsoon rainforest patches in the Top End of the Northern Territory was surveyed during the dry season of 1990. This fauna contains few obligate monsoon rainforest species, many species which favour this habitat as part of a broad habitat range and a large number of species (indeed most of the regional species pool) that occasionally occur within monsoon rainforests. The taxonomic composition of species favouring monsoon rainforests is a non-random selection from the regional pool, with relatively few species in the families Agamidae and Scincidae occurring commonly in monsoon rainforests. Environmental variation among the rainforest patches sampled was portrayed by ordination, with the first axis corresponding to an environmental gradient from coastal sites to inland rocky rainforests and the second a gradient from relatively dry thickets to tall dense rainforests close to water. The distributions of herpetofauna species were depicted on this ordination space. Most frog species occurred in relatively wet rainforests and most gecko species were relatively restricted to drier rainforests. A substantial component of the herpetofauna was associated with rainforests on rocky substrate. In contrast to this relatively good association with these defined gradients, there was little apparent influence of patch size or level of disturbance on the distribution of individual species of herpetofauna. Sampling month was related to the abundance of many species, with many frog species and some snake and skink species declining (but some skink and one frog species increasing) in abundance in rainforest patches during the late dry season. This seasonal change in abundance is not due to movements from rainforest patches to adjacent vegetation types (or vice versa) but rather to total landscape (cross-habitat) changes in abundance (or detectability). The species composition of patches tended to be idiosyncratic, with substantial variability in composition, even between nearby patches of like environment. Hence it is not possible to nominate a representative rainforest herpetofauna, and indeed a classification of all quadrats (including those from rainforests, rainforest edges and adjacent habitats) based on herpetofauna species composition grouped many non-rainforest quadrats with those from rainforests. There was no rainforest edge herpetofauna assemblage. The herpetofauna from rainforests of the Northern Territory was similar to but somewhat richer than that recorded from the even more attenuated monsoon rainforest area of the Kimberley of northwestern Australia, but shared relatively few species with a sampling from monsoon rainforests from western Cape York. Frog species were more likely to be recorded across these three regions than were snake species. The number of herpetofaunal species per patch was low compared to tropical forests in northeastern Australia, Asia and central America. The long dry season of the Top End may contribute to this impoverishment. However, the small total area of monsoon rainforests in this region, the current scattered network of patches and historical fluctuations in extent and distribution of this habitat are probably at least as important.     

Comparative phylogeography and speciation of dung beetles from the Australian Wet Tropics rainforest

In tropical rainforests, insects show especially high species richness and local endemism of species relative to vertebrates. One possible cause is that insects respond to historical fluctuations of rainforests on a smaller spatial scale than do vertebrates. To evaluate this hypothesis, we combine environmental niche models and mitochondrial DNA phylogeography for two pairs of sister species of the dung beetle genus Temnoplectron (T. aeneopiceum-T. subvolitans and T. politulum-T. reyi) from the rainforests of northeastern Australia, where climate-driven rainforest fluctuations in the Quaternary have strongly influenced genetic and species diversity of vertebrates. Within both species pairs, the bioclimatic niche was conserved, but the T. aeneopiceum-T. subvolitans species pair had the narrower environmental range, and thus more restricted potential distribution. Coalescent analyses indicated Late Pliocene or Early Pleistocene divergences for both species pairs, and earlier speciation in (T. aeneopiceum-T. subvolitans) than in (T. politulum-T. reyi). Phylogeographic structure in (T. aeneopiceum-T. subvolitans) was more pronounced than in (T. politulum-T. reyi), with significant isolation-by-distance in the former species-pair only. Nested clade and coalescence analyses indicated local range expansions for the T. aeneopiceum-subvolitans species pair and range-wide expansion for both T. politulum and T. reyi. We suggest that stronger phylogeographic structure and earlier divergence in (T. aeneopiceum-T. subvolitans) than in (T. politulum-T. reyi) reflects a stronger influence of environmental barriers to gene flow under the present climate and greater sensitivity to warmer and drier periods of the Quaternary. The two species pairs evidently responded to Quaternary rainforest fluctuations at spatial scales similar to those seen within low-vagility species of vertebrate. Despite this similarity of scale, these insect lineages are reproductively isolated at parapatric boundaries, whereas analogous lineages of vertebrates often are not. We suggest that rapid evolution of genitalia may facilitate geographic speciation in rainforest beetles.     

Mapping Biodiversity and Setting Conservation Priorities for SE Queensland’s Rainforests Using DNA Barcoding

Australian rainforests have been fragmented due to past climatic changes and more recently landscape change as a result of clearing for agriculture and urban spread. The subtropical rainforests of South Eastern Queensland are significantly more fragmented than the tropical World Heritage listed northern rainforests and are subject to much greater human population pressures. The Australian rainforest flora is relatively taxonomically rich at the family level, but less so at the species level. Current methods to assess biodiversity based on species numbers fail to adequately capture this richness at higher taxonomic levels. We developed a DNA barcode library for the SE Queensland rainforest flora to support a methodology for biodiversity assessment that incorporates both taxonomic diversity and phylogenetic relationships. We placed our SE Queensland phylogeny based on a three marker DNA barcode within a larger international rainforest barcode library and used this to calculate phylogenetic diversity (PD). We compared phylo- diversity measures, species composition and richness and ecosystem diversity of the SE Queensland rainforest estate to identify which bio subregions contain the greatest rainforest biodiversity, subregion relationships and their level of protection. We identified areas of highest conservation priority. Diversity was not correlated with rainforest area in SE Queensland subregions but PD was correlated with both the percent of the subregion occupied by rainforest and the diversity of regional ecosystems (RE) present. The patterns of species diversity and phylogenetic diversity suggest a strong influence of historical biogeography. Some subregions contain significantly more PD than expected by chance, consistent with the concept of refugia, while others were significantly phylogenetically clustered, consistent with recent range expansions.     

Assessing the vulnerability of an assemblage of subtropical rainforest vertebrate species to climate change in south‐east Queensland

Global climate change is a threat to ecosystems that are rich in biodiversity and endemism, such as the World Heritage‐listed subtropical rainforests of central eastern Australia. Possible effects of climate change on the biota of tropical rainforests have been studied, but subtropical rainforests have received less attention. We analysed published data for an assemblage of 38 subtropical rainforest vertebrate species in four taxonomic groups to evaluate their relative vulnerability to climate change. Focusing on endemic and/or threatened species, we considered two aspects of vulnerability: (i) resistance, defined by indicators of rarity (geographical range, habitat specificity and local abundance); and (ii) resilience, defined by indicators of a species potential to recover (reproductive output, dispersal potential and climatic niche). Our analysis indicated that frogs are most vulnerable to climate change, followed by reptiles, birds, then mammals. Many species in our assemblage are regionally endemic montane rainforest specialists with high vulnerability. Monitoring of taxa in regenerating rainforest showed that many species with high resilience traits also persisted in disturbed habitat, suggesting that they have capacity to recolonize habitats after disturbance, that is climate change‐induced events. These results will allow us to prioritize adaptation strategies for species most at risk. We conclude that to safeguard the most vulnerable amphibian, reptile and bird species against climate change, climatically stable habitats (cool refugia) that are currently without protection status need to be identified, restored and incorporated in the current reserve system. Our study provides evidence that montane subtropical rainforest deserves highest protection status as habitat for vulnerable taxa.     

Effect of vagility potential on dispersal and speciation in rainforest insects

Explaining global patterns of species diversity is one of the most challenging objectives in biology. Most agree that complex interactions between historical and current processes are responsible for such patterns, although rigorous testing of possible mechanisms has proved difficult. Here we demonstrate that macropterous and flightless insects in the rainforests of north-eastern Australia have dispersed and speciated in similar manners. These results contradict the traditionally held assumption that differences in vagility potential would lead to significant differences in distributional patterns and speciation modes.     

Can changes in ant diversity along elevational gradients in tropical and subtropical Australian rainforests be used to detect a signal of past lowland biotic attrition?

Increasing temperatures are predicted to have profound effects on montane ecosystems. In tropical forests, biotic attrition may reduce lowland diversity if losses of species due to upslope range shifts are not matched by influxes of warmer‐adapted species, either because there are none or their dispersal is impeded. Australian rainforests consist of a north–south chain of patches, broken by dry corridors that are barriers to the dispersal of rainforest species. These rainforests have repeatedly contracted and expanded during Quaternary glacial cycles. Many lowland rainforests are expansions since the Last Glacial Maximum and may, therefore, show a signal of historical biotic attrition. We surveyed ants from replicated sites along three rainforest elevational transects in eastern Australia spanning 200 to 1200 m a.s.l. and nearly 14° of latitude. We examined elevational patterns of ant diversity and if there was possible evidence of lowland biotic attrition. Each transect was in a different biogeographic region; the Australian Wet Tropics (16.3°S), the central Queensland coast (21.1°S) and subtropical south‐eastern Queensland (28.1°S). We calculated ant species density (mean species per site) and species richness (estimated number of species by incorporating site‐to‐site species turnover) within elevational bands. Ant species density showed no signal of lowland attrition and was high at low and mid‐elevations and declined only at high elevations at all transects. Similarly, estimated species richness showed no evidence of lowland attrition in the Wet Tropics and subtropical south‐east Queensland; species richness peaked at low elevations and declined monotonically with increasing elevation. Persistence of lowland rainforest refugia in the Wet Tropics during the Last Glacial Maximum and latitudinal range shifts of ants in subtropical rainforests during the Holocene climatic optimum may have counteracted lowland biotic attrition. In central Queensland, however, estimated richness was similar in the lowlands and mid‐elevations, and few ant species were indicative of lower elevations. This may reflect historical biotic attrition due perhaps to a lack of lowland glacial refugia and the isolation of this region by a dry forest barrier to the north.     

Comparative phylogeography and the history of endemic vertebrates in the Wet Tropics rainforests of Australia

We examine the effects of historical climate change on vertebrate differentiation in tropical rainforest by comparing phylogeographic patterns in six species of widespread rainforest-restricted herpetofauna from throughout the Wet Tropics of Australia. Qualitative and quantitative comparisons of phylogeographic structure reveal strikingly similar patterns of pre-Pleistocene vicariant population differentiation on either side of a previously identified biogeographic break (variously referred to as the Black Mountain Barrier or Corridor; BMC). While divergence across the BMC antedates the Pleistocene, the impact of Quaternary climate change is apparent in populations on either side of the BMC. Consistent with palaeoclimatological reconstructions for the region, the distribution and degree of mtDNA diversity suggests that populations were fragmented and reduced to multiple refugia during Pleistocene glacial periods, with expansion following Holocene rainforest recovery. This pattern is repeated on both sides of the BMC, but substantial differences in the amount and distribution of mtDNA diversity within species indicate the importance of species-specific ecological characteristics. The historical processes of extinction and (re)colonization revealed by the comparative phylogeographic analysis of mtDNA sequences substantiate earlier suggestions that current regional patterns of species distribution and diversity in the Wet Tropics are largely determined by local extinctions and subsequent recolonization driven by Quaternary climate changes.     

西双版纳热带雨林下砂仁拔除后的生态恢复

 种植砂仁（Amomum villosum）对西双版纳热带雨林植物多样性的影响引起了人们的关注。通过西双版纳热带雨林下种植的砂仁拔除后的生态恢复两年的研究工作,结果表明砂仁排除后：1）林下植物数量显著增加,超过同等类型的没种过砂仁的原始热带雨林;植物种类、物种多样性和均匀度都有大幅度增加,与原始热带雨林差别不大;群落组成成分仍向着热带雨林演替,优势种不明显,其中,草本和蕨类植物增加显著;2）林下植物生长速率在旱季与原始林差别不大,但在雨季可有较快生长;生物量在两年内可达到(636.1±43.4) g·m-2,超过原始林,特别是草本和蕨类植物生长较快;3）土壤含水量得到提高,与原始林相比差异不显著,并且,涵养水源的能力有所增加;深层土壤有机质的含量增加显著,速效磷含量需要更长时间的植被恢复才能有所提高,速效钾受淋洗作用的影响,地表有大量损失。文中最后讨论指出,热带林下砂仁实现斑块式的轮歇种植是协调保护与发展的较好方法,这在偏远少数民族地区有着较好的可行性。     

Patterns of Phylogenetic Diversity of Subtropical Rainforest of the Great Sandy Region,Australia Indicate Long Term Climatic Refugia

Australia’s Great Sandy Region is of international significance containing two World Heritage areas and patches of rainforest growing on white sand. Previous broad-scale analysis found the Great Sandy biogeographic subregion contained a significantly more phylogenetically even subset of species than expected by chance contrasting with rainforest on white sand in Peru. This study aimed to test the patterns of rainforest diversity and relatedness at a finer scale and to investigate why we may find different patterns of phylogenetic evenness compared with rainforests on white sands in other parts of the world. This study focussed on rainforest sites within the Great Sandy and surrounding areas in South East Queensland (SEQ), Australia. We undertook field collections, expanded our three-marker DNA barcode library of SEQ rainforest plants and updated the phylogeny to 95% of the SEQ rainforest flora. We sampled species composition of rainforest in fixed area plots from 100 sites. We calculated phylogenetic diversity (PD) measures as well as species richness (SR) for each rainforest community. These combined with site variables such as geology, were used to evaluate patterns and relatedness. We found that many rainforest communities in the Great Sandy area were significantly phylogenetically even at the individual site level consistent with a broader subregion analysis. Sites from adjacent areas were either not significant or were significantly phylogenetically clustered. Some results in the neighbouring areas were consistent with historic range expansions. In contrast with expectations, sites located on the oldest substrates had significantly lower phylogenetic diversity (PD). Fraser Island was once connected to mainland Australia, our results are consistent with a region geologically old enough to have continuously supported rainforest in refugia. The interface of tropical and temperate floras in part also explains the significant phylogenetic evenness and higher than expected phylogenetic diversity.     

Richness and diversity of Leguminosae in an altitudinal gradient in the tropical semi‐arid zone of Brazil

Abstract Many studies are based on the premise that, on a local scale, diversity is the result of ecological processes, whereas on a regional scale factors such as the topography, geology, hydrology, and historical and evolutionary events would influence this control. The Baturité Mountain Range (Ceará state), located in the Brazilian semi‐arid zone, is considered an area of extreme importance for conservation with its vegetation varying with the altitude and slope (windward vs. leeward). On the windward (wet) slope, rainforest dominates, whereas the leeward (dry) slope is dominated by seasonal forests and thorny woodland. The aim of this study was to contribute to the knowledge of the patterns of richness and diversity of the family Leguminosae on a local scale (Baturité Mountain Range) as well as a regional scale (northeastern Brazil). The two slopes present quite distinct floras. The dry slope presents higher richness and diversity indices for Leguminosae than the wet slope. The highest diversity of Leguminosae in the dry areas did not corroborate the ideas of other studies carried out in neotropical forests (total flora) that the higher species richness was predicted for wet areas. The present study indicates that the historical and evolutionary processes influence the diversity patterns on a local scale (Baturité Mountain Range), as well as on a regional scale (Brazilian semi‐arid). Our results reinforce the uniqueness of each portion of this area and its importance for conservation.     

Rainforest seed rain into abandoned tropical Australian pasture is dependent on adjacent rainforest structure and extent

It is well known that the recovery of abandoned tropical pastures to secondary rainforest benefits from the arrival of seeds from adjacent rainforest patches. Less is known, however, about how the structural attributes of adjacent rainforest (e.g. tree density, canopy cover and tree height) impact seed rain patterns into abandoned pastures. Between 2011 and 2013, we used seed traps and ground seed surveys to track the richness and abundance of rainforest seeds entering abandoned pastures in Australia's wet tropics. We also tested how seed rain diversity is related to the distance from forest, the proportion of forest cover in the landscape and several structural attributes of adjacent forest patches, specifically average tree height, canopy cover, tree species richness and density. Almost no seeds were captured in elevated pasture seed traps, even near forest remnants. Abundant forest seeds were found in ground surveys but only within 10 m of forest edges. In ground surveys, seeds from wind‐dispersed species were more abundant, but less species rich, than animal‐dispersed species. A survey of pasture seedling recruits suggested that some forest seeds must be dispersing more than 10 m into pasture at very low frequencies, but only a few species are establishing there. Recruits were predominantly animal‐dispersed not wind‐dispersed species. In addition to distance from forest and the proportion of forest within a 100‐ to 200‐m radius of sampling sites, the richness and density of adjacent forest trees were the most important factors for explaining the probability of seed occurrence in abandoned pastures. Results suggest that without some restoration assistance, the recovery of abandoned pastures into secondary rainforest in Australia's tropical rainforests will likely be limited, at least in part, by a very low rate of seed dispersal away from forest edges and by the diversity and density of trees in adjacent remnant forests.     

A PHYLOGENETIC PERSPECTIVE ON ELEVATIONAL SPECIES RICHNESS PATTERNS IN MIDDLE AMERICAN TREEFROGS: WHY SO FEW SPECIES IN LOWLAND TROPICAL RAINFORESTS?

Differences in species richness at different elevations are widespread and important for conservation, but the causes of these patterns remain poorly understood. Here, we use a phylogenetic perspective to address the evolutionary and biogeographic processes that underlie elevational diversity patterns within a region. We focus on a diverse but well-studied fauna of tropical amphibians, the hylid frogs of Middle America. Middle American treefrogs show a "hump-shaped" pattern of species richness (common in many organisms and regions), with the highest regional diversity at intermediate elevations. We reconstructed phylogenetic relationships among 138 species by combining new and published sequence data from 10 genes and then used this phylogeny to infer evolutionary rates and patterns. The high species richness of intermediate elevations seems to result from two factors. First, a tendency for montane clades to have higher rates of diversification. Second, the early colonization of montane regions, leaving less time for speciation to build up species richness in lowland regions (including tropical rainforests) that have been colonized more recently. This "time-for-speciation" effect may explain many diversity patterns and has important implications for conservation. The results also imply that local-scale environmental factors alone may be insufficient to explain the high species richness of lowland tropical rainforests, and that diversification rates are lower in earth's most species-rich biome.     

Convergence in community structure and dietary adaptation in Australian possums and gliders and Malagasy lemurs

Abstract The possums and gliders of Australia and the lemurs of Madagascar are ideally suited for investigation of radiation and convergence in arboreal mammal communities because of their long history of independent radiation in similar biophysical environments. Possum and glider communities at 22 sites in Australia and lemur communities at 18 sites in Madagascar were compared to evaluate patterns of community and species convergence in two shared habitats (evergreen and deciduous monsoon rainforests) and three derived habitats (Australian eucalypt forests and heaths, and Malagasy thorn scrubs). Arboreal mammals were classified into five dietary guilds for comparison of community structure and species adaptation. There is little evidence of convergence in trophic structure at the community level, but strong evidence of convergence in dietary adaptation at the species and niche level. Malagasy rainforest communities were characterized by a higher proportion of frugivore-folivores, and Australian rainforest and moist eucalypt communities by a higher proportion of folivores and folivore-frugivores. Possum and glider communities in temperate eucalypt forests and heaths supported a higher proportion of nectarivores and exudivores. Overall species richness was significantly higher in Madagascar. Four hypotheses are erected to account for these differences. The relative scarcity of frugivores in Australian evergreen rainforests is accounted for by the predominance of bird-dispersed fruits, and fruiting phenologies unsuitable for mammal exploitation and dispersal. Higher folivore diversity in Australian evergreen rainforests is associated with a more pronounced seasonal shortage of edible fruits and new leaf, which has increased dependence on mature leaf. Folivore species richness is greatest in Australian moist eucalypt forests where structural complexity, sustained by serai responses to wildfire, permits a high level of vertical segregation. Increased nectarivory and exudivory in Australian temperate eucalypt forests and heaths is associated with Mediterranean winter rainfall regimes, which permit year round exudate production, and not with the absence of nectar feeding bats as previously supposed. A lower overall species richness in Australian rainforests is attributed to a longer history of contraction and fragmentation by anthropogenic fires (monsoon rainforests) and Pleistocene climatic change (tropical evergreen rainforests). A high degree of convergence is apparent between genera occupying folivore and wood gouging niches, in terms of gastrointestinal morphology (e.g. Pseudocheirus-Lepilemur) and dental morphology (e.g. Dactylopsila-Daubentonia). Divergences are most apparent in adaptations associated with frugivory, including larger body size, diurnality, and bipedal suspension and leaping modes of locomotion (in Eulemur spp.). This study highlights the importance of founding effects, competition from other vertebrate taxa, coevolution between animals and their food plants, and differences in biophysical environments, as determinants of mammalian radiation and convergence.     

Patterns of distribution for southern Australian marine echinoderms and decapods

Aim To relate patterns of distribution of marine echinoderms and decapods around southern Australia to major ecological and historical factors. Location Shallow‐water (0–100 m) marine waters off southern Australia, south of 30° S. Methods (1) Record the presence/absence of known echinoderm and decapod species in cells of c. 1° latitude and longitude, along the coast of southern mainland Australia and Tasmania. (2) Describe patterns in species composition, species richness and endemism through gradient analysis, ordination and cluster analysis. (3) Relate these patterns to distance and temperature gradients, the area of continental shelf, the average size of species range, and known historical factors. Results Species composition varied with both latitude and longitude. Species richness was relatively constant from east to west but graded with latitude from high in the warm‐temperate regions around Perth and Sydney to low in cool‐temperate southern Tasmania. Species richness was not related to the area of continental shelf or average species range size. Species turnover was not correlated with rates of temperature change. It was problematic to separate distance from temperature gradients, but there was evidence that the southern distribution limits of some species are related to minimum sea surface temperature. Within the taxonomic groups surveyed, evolutionary radiation has been largely limited to a few cosmopolitan species‐rich genera. Main conclusions There are historical as well as ecological hypotheses explaining the latitudinal gradient of marine species richness in southern Australia: (1) the continual invasion and speciation of species of tropical origin as Australia has split from Gondwana and drifted northward; (2) progressive extinction of some Gondwanan cool‐temperate species at the limits of their range; (3) low level of immigration of additional cool‐temperate species; and (4) some in situ endemic speciation.     

Determinants of bird species richness,endemism, and island network roles in Wallacea and the West Indies: is geography sufficient or does current and historical climate matter?

Island biogeography has greatly contributed to our understanding of the processes determining species' distributions. Previous research has focused on the effects of island geography (i.e., island area, elevation, and isolation) and current climate as drivers of island species richness and endemism. Here, we evaluate the potential additional effects of historical climate on breeding land bird richness and endemism in Wallacea and the West Indies. Furthermore, on the basis of species distributions, we identify island biogeographical network roles and examine their association with geography, current and historical climate, and bird richness/endemism. We found that island geography, especially island area but also isolation and elevation, largely explained the variation in island species richness and endemism. Current and historical climate only added marginally to our understanding of the distribution of species on islands, and this was idiosyncratic to each archipelago. In the West Indies, endemic richness was slightly reduced on islands with historically unstable climates; weak support for the opposite was found in Wallacea. In both archipelagos, large islands with many endemics and situated far from other large islands had high importance for the linkage within modules, indicating that these islands potentially act as speciation pumps and source islands for surrounding smaller islands within the module and, thus, define the biogeographical modules. Large islands situated far from the mainland and/or with a high number of nonendemics acted as links between modules. Additionally, in Wallacea, but not in the West Indies, climatically unstable islands tended to interlink biogeographical modules. The weak and idiosyncratic effect of historical climate on island richness, endemism, and network roles indicates that historical climate had little effects on extinction‐immigration dynamics. This is in contrast to the strong effect of historical climate observed on the mainland, possibly because surrounding oceans buffer against strong climate oscillations and because geography is a strong determinant of island richness, endemism and network roles.     

Phytogeography, range size and richness of Australian endemic Sauropus (Euphorbiaceae)

Aim To investigate the distribution of Australian species of Sauropus. The information obtained is used to (1) identify areas of highest richness and centres of endemism, (2) investigate latitudinal gradients of richness and range size, (3) determine the types of rarity shown, and (4) provide hypotheses on historical biogeography of the genus within Australia. Location Australia. Methods Specimens from 17 herbaria and field searches were examined and label and field information collated on distribution, habit and habitat. Distribution information was used to map all species within 784 grid cells of 1° × 1° and within the 97 Australian ‘ecological regions’. Morphometric cluster analysis of species was conducted using Kulczynski association and flexible UPGMA on 23 character states. Simple regression was used to correlate species richness, density and range size to changes in latitude. CLIMEX is used to match the climate of the region of highest richness in Australia with other areas of the world. Results Species richness was highest within the tropical north of Australia, and most species were associated with tropical savanna woodlands. Two areas were identified as centres of endemism and these corresponded closely to areas of high species richness. Four morphological groups were identified. One species (Sauropus trachyspermus) was found to be widespread, however all other species had small geographical ranges. Species richness and range size were significantly correlated with changes in latitude. Ten species were found to be of the rarest type, warranting conservation initiatives. Main conclusions Two regions of high richness and endemism of Sauropus occur, Thailand and Australia. Within Australia, the Kakadu‐Alligator River and the Cairns‐Townsville areas were identified as centres of endemism and high species richness for Sauropus. Australian Sauropus in general occur in similar communities and climates as other members of the genus elsewhere. Ten of the 27 species of Australian endemic Sauropus are extremely rare and warrant conservation initiatives. Correlations of latitude to species richness are potentially due to Sauropus radiating from the climatically stable top end of Australia. Increasing range size in more southern latitudes may also be due to stability of climates in the top end or because there is more available land area at these latitudes. Sauropus micranthus, the only non‐endemic species, is probably a more recent invader from the Tertiary period when tropical rain forests where more extensive and congruent with those of New Guinea.     

Effects of landscape disturbance on mosquito community composition in tropical Australia

Emerging infectious diseases are considered to be a growing threat to human and wildlife health. Such diseases might be facilitated by anthropogenic land-use changes that cause novel juxtapositions of different habitats and species and result in new interchanges of vectors, diseases, and hosts. To search for such effects in tropical Australia, we sampled mosquito populations across anthropogenic disturbance gradients of grassland, artificial rainforest edge, and rainforest interior. From >15,000 captured mosquitoes, we identified 26 species and eight genera. Surprisingly, there was no significant difference in community composition or species richness between forest edges and grasslands, but both differed significantly from rainforest interiors. Mosquito species richness was elevated in grasslands relative to the rainforest habitats. Seven species were unique to grasslands and edges, with another 13 found across all habitats. Among the three most abundant species, Culex annulirostris occurred in all habitat types, whereas Verrallina lineata and Cx. pullus were more abundant in forest interiors. Our findings suggest that the creation of anthropogenic grasslands adjacent to rainforests may increase the susceptibility of species in both habitats to transmission of novel diseases via observable changes and mixing of the vector community on rainforest edges.     

Elevational gradients in species abundance,assemblage structure and energy use of rainforest birds in the Australian Wet Tropics bioregion

Elevational patterns of species richness, local abundance and assemblage structure of rainforest birds of north‐eastern Australia were explored using data from extensive standardized surveys throughout the region. Eighty‐two species of birds were recorded with strong turnover in assemblage structure across the elevational gradient and high levels of regional endemism in the uplands. Both species richness and bird abundance exhibited a humped‐shaped pattern with elevation with the highest values being between 600 and 800 m elevation. While much of the variability in species richness could be explained by the species–area relationship, analyses of net primary productivity (NPP) and total daily energy consumption of the bird community (energy use) suggest that ecosystem energy flow or constraints may be a significant determinant of species richness. Species richness is positively correlated with local bird abundance which itself is closely related to total energy use of the bird community. We suggest the hypothesis that lower NPP limits bird abundance and energy use in the uplands (>500 m) and that low bird energy use and species richness in the lowlands is limited by a seasonal bottleneck in available primary productivity and/or a species pool previously truncated by an extinction filter imposed by the almost complete disappearance of rainforest in the lowlands during the glacial maxima. We suggest that some of the previously predicted impacts of global warming on biodiversity in the uplands may be partially ameliorated by increases in NPP because of increasing temperatures. However, these relationships are complex and require further data specifically in regard to direct estimates of primary productivity and detailed estimates of energy flow within the assemblage.     

Prediction of phylogeographic endemism in an environmentally complex biome

Phylogeographic endemism, the degree to which the history of recently evolved lineages is spatially restricted, reflects fundamental evolutionary processes such as cryptic divergence, adaptation and biological responses to environmental heterogeneity. Attempts to explain the extraordinary diversity of the tropics, which often includes deep phylogeographic structure, frequently invoke interactions of climate variability across space, time and topography. To evaluate historical versus contemporary drivers of phylogeographic endemism in a tropical system, we analyse the effects of current and past climatic variation on the genetic diversity of 25 vertebrates in the Brazilian Atlantic rainforest. We identify two divergent bioclimatic domains within the forest and high turnover around the Rio Doce. Independent modelling of these domains demonstrates that endemism patterns are subject to different climatic drivers. Past climate dynamics, specifically areas of relative stability, predict phylogeographic endemism in the north. Conversely, contemporary climatic heterogeneity better explains endemism in the south. These results accord with recent speleothem and fossil pollen studies, suggesting that climatic variability through the last 250 kyr impacted the northern and the southern forests differently. Incorporating sub-regional differences in climate dynamics will enhance our ability to understand those processes shaping high phylogeographic and species endemism, in the Neotropics and beyond.