Effect of stand age on soil microbial community structure in wolfberry (Lycium barbarum L.) fields

Soil physicochemical properties and microbes are essential in terrestrial ecosystems through their role in cycling mineral compounds and decomposing organic matter. This study examined the effect of stand age on soil physicochemical properties and microbial community structure in wolfberry (Lycium barbarum L.) fields, in order to reveal the mechanism of soil degradation due to long-term stand of L. barbarum. The objective of the study was achieved by phospholipid fatty acid (PLFA) biomarker analysis of soil samples from L. barbarum fields in Zhongning County, Ningxia Province—the origin of L. barbarum. Five stand ages of L. barbarum were selected, < 1, 3, 6, 9, and 12 years (three plots each). The results showed that soil bulk density increased slightly with increasing stand age, while no clear trend was observed in soil pH or total salinity. As the stand age increased, soil organic matter and nutrients first increased before decreasing, with the highest levels being found in year 9. There was an amazing variety of PLFA biomarkers in soil samples at different stand ages. The average concentrations of total, bacterial, fungal, and actinomycete PLFAs in the surface soil initially decreased and then increased, before decreasing with the stand age in summer. The PLFA concentrations of major microbial groups were highest in year 9, with the total PLFA concentrations being 32.97% and 10.67% higher than those in years < 1 and 12, respectively. Higher microbial PLFA concentrations were detected in summer relative to autumn and in the surface relative to the subsurface soil. The highest ratios of Gram-positive to Gram-negative bacterial (G^?/G⁺) and fungal to bacterial (F/B) PLFAs were obtained in year 6, on average 76.09% higher than those at the other four stand ages. The soil environment was most stable in year 6, with no differences between other stand ages. Therefore, soil microbial community structure was strongly influenced by the stand age in year 6 only. The effect of stand age on soil G^?/G⁺ and microbial community structure varied with season and depth; there was little effect for F/B in the 20–40 cm soil layer. Principal component analysis revealed no correlations between microbial PLFA concentrations and total salinity in the soil; negative correlations were noted between soil pH and F/B in summer (P < 0.01), as well as between soil pH and fungal PLFA in autumn (P < 0.05). Moreover, microbial PLFA concentrations were correlated with soil organic matter (mean R = 0.7725), total nitrogen (mean R = 0.8296), total phosphorus (mean R = 0.8175), available nitrogen (mean R = 0.7458), and available phosphorus (mean R = 0.7795) (P < 0.01). On the whole, the soil ecosystem was most stable in year 6, while soil organic matter, nutrients, and microbial PLFA concentrations were maximal in year 9; thereafter, soil fertility indices and microbial concentrations decreased and soil quality declined gradually as the stand age increased. Therefore, farmers should reduce the application rate of fertilizers, especially compound or mixed fertilizers, in L. barbarum fields; organic or bacterial manure can be applied increasingly to improve the soil environment and prolong the economic life of L. barbarum.     

Effects of below-ground insects, mycorrhizal fungi and soil fertility on the establishment of Vicia in grassland communities

 The effects of, and interactions between, insect root feeders, vesicular-arbuscular mycorrhizal fungi and soil fertility on the establishment, growth and reproduction of Vicia sativa and V. hirsuta (Fabaceae) were investigated in an early-successional grassland community. Seeds of both species were sown into plots where soil insecticide (Dursban 5G), soil fungicide (Rovral) and soil fertiliser (NPK) were applied in a factorial randomised block design. Fertiliser addition reduced growth, longevity and reproduction of both Vicia species, due to the commonly recorded increase in the competitive advantage of the non-nitrogen-fixing species when nitrogen is added to the plant community. However, in plots where fertiliser was not applied, a reduction in root feeders and mycorrhizal infection led to an increase in seedling establishment and fruit production of V. sativa, and to an increase in flower production for both Vicia species. The interaction between all three soil treatments explained much of the variation in growth and longevity of V. sativa. Plants grew larger and survived longer in plots where natural levels of mycorrhizal infection and root feeders were low compared with plots where all the treatments were applied. This suggests that, although soil nutrient availability was a strong determinant of the performance of these two leguminous species, at natural levels of soil fertility biotic factors acting in the soil, such as mycorrhizal fungi and soil-dwelling insects, were important in shaping the competitive interactions between the two Vicia species and the plant community. Our results indicate that non-additive interactions between ecological factors in the soil environment may strongly affect plant performance. Received: 18 July 1995 / Accepted: 14 August 1996     

Diversity and ecology of soil fungal communities in rubber plantations

Monoculture rubber cultivation and its intensive associated human activities are known to have a negative impact on the biodiversity, ecology, and biological conservation of the ecosystems in which they occur. These negative impacts include changes to the biodiversity and function of soil fungal communities, which contribute towards nutrient cycling and interact with other organisms in belowground ecosystems, and may be pathogens. Despite the important role of soil fungi in rubber plantations, these communities have been poorly studied. In this paper, we review the existing literature on the diversity and ecology of belowground fungi in rubber plantations. Various groups of soil fungi, including saprobes, symbionts, and pathogens are discussed. Additionally, the role of plantation management is discussed in the context of both pathogenic soil fungi and the promotion of beneficial soil fungi. Management practices include clone selection, tree age and planting density, application of chemicals, and intercropping systems. Our review shows the strong need for further research into the effects of monoculture rubber plantations on soil fungal communities, and how we can best manage these systems in the future, in order to create a more sustainable approach to rubber production.     

橘皮表面真菌群落结构多样性分析

【目的】研究鲜橘皮表面真菌群落结构多样性,为探讨橘皮经贮藏陈化为陈皮真菌群落的变化奠定基础。【方法】在广东、四川、广西、江西、重庆5个柑橘主产地采集橘栽培变种茶枝柑、大红袍等的鲜橘皮,在Illumina Hi Seq平台上扩增橘皮表面真菌ITS区进行高通量测序,分析真菌物种注释及丰富度,并应用α与β多样性分析(AlphaBeta diversity)对真菌群落结构组成进行分析。【结果】8批橘皮样品的有效序列可分类至35个属,不同产地茶枝柑、大红袍等品种橘皮表面真菌群落由7类真菌群落组成,种类一致,其中担孢酵母属(Erythrobasidium)、青霉属(Penicillium)、曲霉属(Aspergillus)、红酵母属(Rhodotorula)、球腔菌属(Mycosphaerella)为最大相对丰度排名前5的属,首次在橘皮表面发现枝氯霉属和短梗霉属真菌。【结论】明确了橘皮表面真菌群落结构组成,为橘皮在贮藏过程中真菌群落变化与药材品质变化相关性研究奠定基础。     

Variation in leaf area index and stand leaf mass of European beech across gradients of soil acidity and precipitation

Leaf area index (LAI, the one-sided foliage area per unit ground surface area) is a key determinant of plant productivity which has a large influence on water and energy exchange between vegetation and the atmosphere. The variation in forest LAI across landscapes and environmental gradients and its causes are not sufficiently understood. We measured the LAI of European beech (Fagus sylvatica) by litter trapping in 23 closed, mature stands across gradients of rainfall and soil acidity or fertility. With a mean LAI of 7.4 m² m⁻² (minimum: 5.6, maximum: 9.5 m² m⁻²), beech stands maintained a comparably high leaf area index with relatively small variation along steep environmental gradients. Contrary to expectation, decreasing water availability (rainfall gradient from 1030 to 520 mm yr⁻¹) or increasing soil acidity (pH 3–7) had no significant effect on LAI. Stand leaf mass (M _l) increased slightly with soil fertility (C/N ratio, base saturation). We regressed parameters of site water availability (rainfall), soil fertility or acidity (pH, base saturation, C/N ratio, exchangeable Mg and Al content), and stand structure (stand age and stem density) against LAI and M _l in order to detect environmental controls of stand leaf area. Stand age was the most influential factor for both LAI and M _l (negative relationship). Stem density and the base saturation of the soil affected M _l significantly, but had a weak influence on LAI. We conclude that the leaf area index of beech is mainly under control of age-related physiological factors, whereas the influence of soil chemistry and rainfall is comparably low.     

Soil fungal communities are compositionally resistant to drought manipulations – Evidence from culture-dependent and culture-independent analyses

Current environmental change predictions forecast intensified drought conditions. It is becoming increasingly evident that plant communities are sensitive to drought and that soil-inhabiting microbial communities vary along precipitation gradients. However, the drought sensitivity of microbial communities in general and that of soil fungi in particular remains unclear, even though understanding their responses to adverse environmental conditions is vital for better understanding of ecosystem service provisioning. We sampled soils at two sites with established experiments that imposed extreme, chronic drought to assess fungal community responses. We analyzed fungal communities using both culture-dependent and -independent tools and MiSeq-sequenced communities from colony forming units (CFU-PCR) on a drought simulating medium and from environmental DNA (ePCR), to compare the conclusions derived from these two methods. Our data from the two approaches consistently indicate that the composition of fungal communities is not affected by the drought treatment, whereas – based on the CFU-PCR but not ePCR data – their richness and diversity increased under drought conditions at the more mesic of the two sites. Further, based on the direct comparisons of CFU-PCR and ePCR, we estimate that more than 10% of the fungal community and more than 20% of the ascomycetes were culturable. We conclude that although recent research indicates that plant and bacterial communities respond to drought, fungal community responses are more variable, particularly in experiments that impose chronic drought under field conditions.     

Variation of soil carbon pools in Pinus sylvestris plantations of different ages in north China

Plantations play an important role in absorbing atmospheric CO₂ and plantation soil can serve as an important carbon (C) sink. However, the stocks and dynamics of soil C in differently aged plantation forests in north China remain uncertain. In this study, we measured soil inorganic carbon (SIC), soil organic carbon (SOC) and total nitrogen content (STN), the light (LF) and heavy fractions (HF) of soil organic matter (SOM) to a depth of 1 m in 3 different ages (10-, 30-, 40-year-old) of Pinus sylvestris var. mongolica (Mongolia pine) plantations in 2011 and 2012. Soil pH, texture and moisture were also measured to explore the causes of SOC dynamics for different stand ages. Our results showed that no significant difference in SIC content was observed at different soil depths. As forest age increases, SIC content as well as the C and N content in SOM, LF and HF initially rose and then decreased, while the LF in SOC initially decreased and then increased. Although the C:N ratio of SOC and HF did not significantly change, the C:N ratio of LF increased with depth. SOC dynamics at different stand ages were significantly correlated with soil moisture and clay content. Soil pH and moisture explained 58.63% of the overall variation of SOC at different depths. Moreover, the SOC increased during the early stage of afforestation, mostly because of the increase in recalcitrant C; however, the decrease of SOC with increasing stand age was also mainly affected by C loss in the recalcitrant C pool.     

Soil CO<Subscript>2</Subscript> efflux in loblolly pine (<Emphasis Type="Italic">Pinus taeda</Emphasis> L.) plantations on the Virginia Piedmont and South Carolina Coastal Plain over a rotation-length chronosequence

We measured soil surface CO₂ efflux (F_s) in loblolly pine stands (Pinus taeda L.) located on the Virginia Piedmont (VA) and South Carolina Coastal Plain (SC) in efforts to assess the impact climate, productivity, and cultural practices have on F_s in the managed loblolly pine ecosystem. The effect of stand age on F_s was examined using a replicated chronosequence approach in which stands ranging from 1 to 25 years since planting were investigated. Soil CO₂ efflux was measured on both VA and SC sites for over a year using a closed dynamic system. Multiple linear regression was used to evaluate F_s correlates and examine the relationship between candidate explanatory variables and F_s. Soil temperature (top 10 cm) was the major correlate with F_s on both locations. We observed a positive age effect on F_s in VA stands and no relationship between age and F_s in SC stands. Annual soil C efflux declined with stand age in SC due to both reductions in soil temperatures as crown closure occurs and a diminishing heterotrophic C substrate pool. Annual estimated efflux ranges from 16.7 to 13.2 Mg C ha⁻¹ for 1 and 20-year-old stands, respectively. In contrast, annual soil C efflux increased with age in VA stands as a result of the positive relationship between stand age and F_s, which appears to be related to an increase in the contribution of root respiration to total F_s over time. In VA stands, efflux estimates range from 7.6 to 12.3 Mg C ha⁻¹ for 1 and 20-year-old stands, respectively. These results demonstrate the need to further consider the impact forest management and within-region variability have on soil C efflux over time when estimating C budgets.     

Influence of soil nutrients on ectomycorrhizal communities in a chronosequence of mixed temperate forests

Many factors associated with forests are collectively responsible for controlling ectomycorrhizal (ECM) fungal community structure, including plant species composition, forest structure, stand age, and soil nutrients. The objective of this study was to examine relationships among ECM fungal community measures, local soil nutrients, and stand age along a chronosequence of mixed forest stands that were similar in vegetation composition and site quality. Six combinations of age class (5-, 26-, 65-, and 100-year-old) and stand initiation type (wildfire and clearcut) were replicated on four sites, each representing critical seral stages of stand development in Interior Cedar-Hemlock (ICH) forests of southern British Columbia. We found significant relationships between ECM fungal diversity and both available and organic P; available P was also positively correlated with the abundance of two ECM taxa (Rhizopogon vinicolor group and Cenoccocum geophilum). By contrast, ECM fungal diversity varied unpredictably with total and mineralizable N or C to N ratio. We also found that soil C, N, available P, and forest floor depth did not exhibit strong patterns across stand ages. Overall, ECM fungal community structure was more strongly influenced by stand age than specific soil nutrients, but better correlations with soil nutrients may occur at broader spatial scales covering a wider range of site qualities.     

纳帕海高原湿地真菌群落多样性和组成的分布

【背景】位于滇西北的纳帕海高原湿地,是我国唯一的低纬度、高海拔、季节性半封闭型高原湿地。真菌在湿地生态系统的维持和稳定中发挥着特殊作用,然而关于纳帕海高原湿地真菌群落多样性和组成的研究目前仍无报道。【目的】对纳帕海高原湿地不同季节和土壤类型真菌群落多样性和组成及与环境因子的关系开展系统研究分析,促进对高原湿地微生物多样性的深入认识。【方法】采用荧光定量PCR和高通量测序技术,分析了纳帕海高原湿地不同季节和土壤类型中真菌的数量、群落多样性和组成及其与环境因子的关系。【结果】真菌数量级的变化对于人为干扰下的湿地土壤退化是敏感的响应指标。在真菌群落组成中,约有60%以上未确定的分类信息,40%有确定分类信息的包括6个门17个纲37个目53个科63个属,大部分分类信息集中在Ascomycota门,相对优势属为Gibberella。通过分类水平、OTU水平和β多样性分析比较,在纳帕海高原湿地整体真菌群落多样性和组成受季节变化影响不显著,但不同土壤类型的变化呈显著差异,推测是由于不同采样区植物根际效应和种类的影响。CCA (Canonical correlation analysis)分析表明,在不同采样区受不同土壤理化因子的影响。【结论】揭示了纳帕海高原湿地土壤真菌群落多样性和组成的区域特征,从微生物学角度进一步提出了对纳帕海高原湿地环境保护和恢复的重要性。     

Comparison of fungal communities among ten macrophyte rhizospheres

The fungal community composition, size and several physico-chemical properties were individually investigated in ten macrophyte rhizospheric substrates using nested PCR-denaturing gradient gel electrophoresis and soil chemical methods. Results indicated that both Dothideomycetes and Sordariomycetes were dominant fungi in macrophyte rhizospheric substrates, and denitrifying fungi (Fusarium graminearum) was found in nine of ten macrophyte rhizospheres. Fungal Shannon-Wiener diversity index (H) and richness (S) in Thalia dealbata, Typha latifolia, Iris hexagona and Hemerocallis aurantiaca rhizospheres were higher than those in other six rhizospheres. Fungal number and biomass were 1.91 × 10³ CFUs g^?1 dw and 1.53 μg ergosterol g^?1 dw in Iris pseudacor rhizosphere, and were greater than in other nine rhizospheres. The correlation analysis showed that fungal number and biomass significantly and positively correlated to total soil phosphorus, while fungal H and S were significantly and negatively correlated to total organic carbon. The principal components analysis (PCA) showed that the fungal community significantly divided ten macrophyte rhizospheres into four groups, showing the significant difference of fungal communities among ten rhizospheric substrates. The current study revealed for the first time the importance of rhizospheric fungal community in distinguishing macrophyte rhizospheres, thus will undoubtedly widen our insight into fungal communities in aquatic rhizospheres.     

Succession after stand replacing disturbances by fire,wind throw,and insects in the dark Taiga of Central Siberia

The dark taiga of Siberia is a boreal vegetation dominated by Picea obovata, Abies sibirica, and Pinus sibirica during the late succession. This paper investigates the population and age structure of 18 stands representing different stages after fire, wind throw, and insect damage. To our knowledge, this is the first time that the forest dynamics of the Siberian dark taiga is described quantitatively in terms of succession, and age after disturbance, stand density, and basal area. The basis for the curve–linear age/diameter relation of trees is being analyzed. (1) After a stand-replacing fire Betula dominates (4,000 trees) for about 70 years. Although tree density of Betula decreases rapidly, basal area (BA) reached >30 m²/ha after 40 years. (2) After fire, Abies, Picea, and Pinus establish at the same time as Betula, but grow slower, continue to gain height and eventually replace Betula. Abies has the highest seedling number (about 1,000 trees/ha) and the highest mortality. Picea establishes with 100–400 trees/ha, it has less mortality, but reached the highest age (>350 years, DBH 51 cm). Picea is the most important indicator for successional age after disturbance. Pinus sibirica is an accompanying species. The widely distributed “mixed boreal forest” is a stage about 120 years after fire reaching a BA of >40 m²/ha. (3) Wind throw and insect damage occur in old conifer stands. Betula does not establish. Abies initially dominates (2,000–6,000 trees/ha), but Picea becomes dominant after 150–200 years since Abies is shorter lived. (4) Without disturbance the forest develops into a pure coniferous canopy (BA 40–50 m²/ha) with a self-regenerating density of 1,000 coniferous canopy trees/ha. There is no collapse of old-growth stands. The dark taiga may serve as an example in which a limited set to tree species may gain dominance under certain disturbance conditions without ever getting monotypic.     

土壤肥力和物种属性决定亚高寒草甸实验群落的生产力

生物多样性与生态系统功能之间的关系及其形成的内在机制还存在很多争议。为了揭示植物群落生产力形成的生态学机制, 采用盆栽方法探讨了物种多样性、物种属性以及施肥水平与植物群落生产力之间的关系。研究结果显示: 在不施肥和每盆施5.0 g磷酸二铵的条件下, 随着物种多样性的增加, 地上生物量增加不显著; 在每盆施10.0 g磷酸二铵的条件下, 随着物种多样性的增加, 地上生物量显著增加。相对于中华羊茅(Festuca sinensis)而言, 垂穗披碱草(Elymus nutans)和垂穗鹅观草(Roegneria nutans)对群落生产力的贡献较大, 但在不同施肥水平和播种密度下, 其影响不完全相同。这表明物种多样性对群落生产力的影响随着土壤肥力的变化而变化; 并且植物群落生产力受组成群落的物种属性影响较大, 而物种属性又与特定时间和特定生境下资源的利用方式相联系。在高肥力水平下, 物种多样性之所以对群落生产力具有正效应, 可能是因为高肥力水平增加了可利用的生态位空间, 最终仍体现在物种组合上。因此, 植物群落的生产力与物种多样性之间没有必然的联系, 而与土壤肥力和土壤肥力决定的物种属性有关。