The GacA global regulator is required for the appropriate expression of Erwinia chrysanthemi 3937 pathogenicity genes during plant infection

Pathogenicity of the phytopathogenic enterobacterium Erwinia chrysanthemi , the causal agent of soft rot disease on many plants, is a complex process involving several factors whose production is regulated by a complex, intertwined regulatory network. In this work we characterized the GacA regulator, member of the GacS–GacA two-component system, as a global regulator which is required for disease expression but not for bacterial multiplication in planta during the first stages of the plant infection. GacA was shown to control the expression of plant cell wall-degrading enzymes and hrp genes in vitro . Analysis of virulence gene expression during infection of Arabidopsis thaliana revealed a coordinated expression of these virulence genes at 12 h post infection and showed that GacA is required for the appropriate production of virulence factors in planta . GacA might partly act by negatively controlling the expression of the pecT gene encoding the global repressor PecT, indicating a hierarchy in the pathways involved in the E. chrysanthemi regulatory network.     

Approaches for extracting practical information from gene co-expression networks in plant biology

Gene co-expression, in many cases, implies the presence of a functional linkage between genes. Co-expression analysis has uncovered gene regulatory mechanisms in model organisms such as Escherichia coli and yeast. Recently, accumulation of Arabidopsis microarray data has facilitated a genome-wide inspection of gene co-expression profiles in this model plant. An approach using network analysis has provided an intuitive way to represent complex co-expression patterns between many genes. Co-expression network analysis has enabled us to extract modules, or groups of tightly co-expressed genes, associated with biological processes. Furthermore, integrated analysis of gene expression and metabolite accumulation has allowed us to hypothesize the functions of genes associated with specific metabolic processes. Co-expression network analysis is a powerful approach for data-driven hypothesis construction and gene prioritization, and provides novel insights into the system-level understanding of plant cellular processes.     

植物花青素合成途径中的调控基因研究进展

花青素广泛分布于高等植物中,是一种水溶性的植物色素,与农作物的多种品质性状密切相关。虽长期受到关注,但其生物合成途径则是近年来随着拟南芥等植物突变体研究的深入才取得突破的。对于花、果实和种子中的花青素研究始终是热点,近来国内外有很多关于花青素合成与基因调控发明研究的报道。随着研究的深入不仅可以为医疗保健等提供科学依据,而且有助于其在农业生产中应用。本文综述了植物花青素基因的研究现状和发展趋势,包括植物花青素生物合成途径,生物合成途径中相关转录因子的调控,以及已经分离和克隆的调控基因在功能方面的研究进展。     

拟南芥R2R3-MYB类转录因子在环境胁迫中的作用

MYB转录因子是植物转录因子中最大的家族之一,以含有保守的MYB结构域为共同特征,分为三个亚族（R1／2-MYB、R2R3-MYB和R1R2R3-MYB）,其中含有两个MYB结构域的R2R3-MYB成员最多,广泛参与植物次生代谢调控、细胞形态发生、胁迫应答、分生组织形成及细胞周期控制等。近年来,R2R3-MYB在植物逆境胁迫中的作用引起了广泛关注,本文综述了拟南芥R2R3-MYB蛋白在环境胁迫响应中作用的研究进展。     

Towards Arabidopsis genome analysis: monitoring expression profiles of 1400 genes using cDNA microarrays

cDNA microarrays containing 1443 Arabidopsis thaliana genes were analyzed for expression profiles in major organs of Arabidopsis plants. Novel expression profiles were identified for many coding sequences with putative gene identifications. Expression patterns of novel sequences provided clues to their possible functions. The results demonstrate how microarrays containing a large number of Arabidopsis genes can provide a powerful tool for plant gene discovery, functional analysis and elucidation of genetic regulatory networks.     

The R2R3-MYB gene family in Arabidopsis thaliana

MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain. In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. 'Classical' MYB factors, which are related to c-Myb, seem to be involved in the control of the cell cycle in animals, plants and other higher eukaryotes. Systematic screens for knockout mutations in MYB genes, followed by phenotypic analyses and the dissection of mutants with interesting phenotypes, have started to unravel the functions of the 125 R2R3-MYB genes in Arabidopsis thaliana. R2R3-type MYB genes control many aspects of plant secondary metabolism, as well as the identity and fate of plant cells.