Genetic composition of interspecific potato somatic hybrids and autofused 4<Emphasis Type="Italic">x</Emphasis> plants evaluated by DArT and cytoplasmic DNA markers

Key message

Using DArT analysis, we demonstrated that all Solanum × michoacanum (+) S. tuberosum somatic hybrids contained all parental chromosomes. However, from 13.9 to 29.6 % of the markers from both parents were lost in the hybrids.

Abstract

Somatic hybrids are an interesting material for research of nucleus-cytoplasm interaction and sources of new nuclear and cytoplasmic combinations. Analyses of genomes of somatic hybrids are essential for studies on genome compatibility between species, its evolution and are important for their efficient exploitation. Diversity array technology (DArT) permits analysis of the composition of nuclear DNA of somatic hybrids. The nuclear genome compositions of 97 Solanum × michoacanum (+) S. tuberosum [mch (+) tbr] somatic hybrids from five fusion combinations and 11 autofused 4x mch were analyzed for the first time based on DArT markers. Out of 5358 DArT markers generated in a single assay, greater than 2000 markers were polymorphic between parents, of which more than 1500 have a known chromosomal location on potato genetic or physical map. DArT markers were distributed along the entire length of 12 chromosomes. We noticed elimination of markers of wild and tbr fusion components. The nuclear genome of individual somatic hybrids was diversified. Mch is a source of resistance to Phytophthora infestans. From 97 mch (+) tbr somatic hybrids, two hybrids and all 11 autofused 4x mch were resistant to P. infestans. The analysis of the structure of particular hybrids’ chromosomes indicated the presence of markers from both parental genomes as well as missing markers spread along the full length of the chromosome. Markers specific to chloroplast DNA and mitochondrial DNA were used for analysis of changes within the organellar genomes of somatic hybrids. Random and non-random segregations of organellar DNA were noted.

     

Location of low copy genes in chromosomes of <Emphasis Type="Italic">Brachiaria</Emphasis> spp.

Repetitive DNA sequences have been widely used in cytogenetic analyses. The use of gene sequences with a low-copy-number, however, is little explored especially in plants. To date, the karyotype details in Brachiaria spp. are limited to the location of rDNA sites. The challenge lies in developing new probes based on incomplete sequencing data for the genus or complete sequencing of related species, since there are no model species with a sequenced genome in Brachiaria spp. The present study aimed at the physical location of conserved genes in chromosomes of Brachiaria ruziziensis, Brachiaria brizantha, and Brachiaria decumbens using RNAseq data, as well as sequences of Setaria italica and Sorghum bicolor through the fluorescent in situ hybridization technique. Five out of approximately 90 selected sequences generated clusters in the chromosomes of the species of Brachiaria studied. We identified genes in synteny with 5S and 45S rDNA sites, which contributed to the identification of chromosome pairs carrying these genes. In some cases, the species of Brachiaria evaluated had syntenic segments conserved across the chromosomes. The use of genomic sequencing data is essential for the enhancement of cytogenetic analyses.     

Genetic Diversity in the Worldwide <Emphasis Type="Italic">Botrychium lunaria</Emphasis> (Ophioglossaceae) Complex,with New Species and New Combinations

The Botrychium lunaria (Ophioglossaceae) complex worldwide includes the named species B. lunaria, B. crenulatum, B. tunux, and B. yaaxudakeit. These species have been distinguished from each other morphologically and genetically. This study further investigates the genetic diversity and geographic distribution of this complex, examining a large number of plants worldwide. Enzyme electrophoresis was used to examine allelic variation of 22 loci for 1574 plants of putative B. lunaria, B. crenulatum and B. tunux from North America, Eurasia, and New Zealand, and B. dusenii from the Falkland Islands. Variation in allelic composition assessed by genetic identity and cluster analysis using the programs PopGene and STRUCTURE as well as morphology and geography indicated that the complex is composed of six distinct entities; two of which warrant recognition as new species, B. neolunaria, endemic to North America, and B. nordicum, sister to the B. lunaria complex, from Iceland and Norway; and a new combination, B. lunaria var. melzeri , endemic to Greenland, Iceland, and Norway. The new taxa are described in this paper. Three entities within B. tunux are discussed but not proposed for recognition at this time. Botrychium lanceolatum, included in this study, is composed of three morphologically and genetically distinct entities warranting taxonomic recognition.     

New and little-known crickets of the subfamily Phalangopsinae (Orthoptera,Gryllidae). 11. The genus <Emphasis Type="Italic">Parendacustes</Emphasis> (Part 2)

Discussions concerning the composition of the genus Parendacustes Chop., in particular, its subgenus Minizacla Gor., are continued. Eleven new taxa of this subgenus are described: P. trusmadi sp. n., P. mulu sp. n., P. brevispina sp. n., P. modispina sp. n., P. longispina sp. n., P. forficula sabah subsp. n., P. doloduo sp. n., P. buton sp. n., P. pallescens sp. n., P. kendari sp. n., and P. lindu sp. n. New data on P. makassari Gor. are also provided.     

New Data on the Taxonomy of the Weevil Subgenus <Emphasis Type="Italic">Caucasoplinthus</Emphasis>, Genus <Emphasis Type="Italic">Plinthus</Emphasis> (Coleoptera,Curculionidae)

The taxonomic composition of the subgenus Caucasoplinthus Davidian, 1995 is revised. The immunis and granulosus groups are downgraded to subgroups of the silphoides and fallax groups, respectively; the voriseki subgroup is transferred from the fallax to the fausti group. Plinthus attilai Davidian et Savitsky, sp. n. and P. ljudae Davidian et Savitsky, sp. n. are described from Turkey and Abkhazia, respectively. New data on the taxonomy, distribution, and ecology of some little-known species are presented. The following new synonymy is established: Molytes vittatus Motschulsky, 1839 (= Meleus irroratus Reitter, 1884, syn. n., = Meleus faldermanni Faust, 1884, syn. n., = Meleus difficilis Faust, 1884, syn. n.).     

The First Record of the Genus <Emphasis Type="Italic">Nepalomyia</Emphasis> Hollis (Diptera,Dolichopodidae) for the Western Part of the Palaearctic Region

The distribution of the species of Nepalomyia Hollis, 1964 over the principal zoogeographical regions is briefly summarized. A new species, Nepalomyia chalajaesp. n. from the North Caucasus, is described. The replacement name Nepalomyia igorinom. n. is proposed for the homonym Nepalomyia yangi Grootaert, 2013, nec Wang, Yang and Grootaert, 2007. A key to males of the ten Palaearctic species of Nepalomyia is given.     

Revision of the <Emphasis Type="Italic">Serrulati</Emphasis> species of <Emphasis Type="Italic">Penstemon</Emphasis> section <Emphasis Type="Italic">Saccanthera</Emphasis> subsection <Emphasis Type="Italic">Serrulati</Emphasis>

A revision of Penstemon sect. Saccanthera subsect. Serrulati includes a new species (P. salmonensis), a new variety (P. triphyllus var. infernalis), and the elevation of a subspecies to species (P. curtiflorus), bringing the total number of species to eight, which are keyed and described, complete with nomenclature and type citations.     

Linkage between the <Emphasis Type="Italic">I</Emphasis>-<Emphasis Type="Italic">3</Emphasis> gene for resistance to Fusarium wilt race 3 and increased sensitivity to bacterial spot in tomato

Key message

The negative association between the I - 3 gene and increased sensitivity to bacterial spot is due to linkage drag (not pleiotropy) and may be remedied by reducing the introgression size.

Abstract

Fusarium wilt is one of the most serious diseases of tomato (Solanum lycopersicum L.) throughout the world. There are three races of the pathogen (races 1, 2 and 3), and the deployment of three single, dominant resistance genes corresponding to each of these has been the primary means of controlling the disease. The I-3 gene was introgressed from S. pennellii and confers resistance to race 3. Although I-3 provides effective control, it is negatively associated with several horticultural traits, including increased sensitivity to bacterial spot disease (Xanthomonas spp.). To test the hypothesis that this association is due to linkage with unfavorable alleles rather than to pleiotropy, we used a map-based approach to develop a collection of recombinant inbred lines varying for portions of I-3 introgression. Progeny of recombinants were evaluated for bacterial spot severity in the field for three seasons, and disease severities were compared between I-3 introgression haplotypes for each recombinant. Results indicated that increased sensitivity to bacterial spot is not associated with the I-3 gene, but rather with an upstream region of the introgression. A survey of public and private inbred lines and hybrids indicates that the majority of modern I-3 germplasm contains a similarly sized introgression for which the negative association with bacterial spot likely persists. In light of this, it is expected that the development and utilization of a reduced I-3 introgression will significantly improve breeding efforts for resistance to Fusarium wilt race 3.

     

Three new species of <Emphasis Type="Italic">Davilla</Emphasis> (Dilleniaceae) from Bahia,Brazil

Three new species of Davilla (Davilla sessilifolia, Davilla minutifolia and Davilla aymardii) from Bahia, Brazil, are described and illustrated. Affinities and diagnostic characteristics of each species are discussed. The new species belong to Davilla sect. Homalochlaena.     

A Review of the Fauna of the Planthopper Family Lophopidae (Homoptera,Fulgoroidea) from Vietnam with Descriptions of New Genera and Species and with Taxonomic Notes

Six new species are described from Vietnam, Apia simplexsp. n., Bisma angulatasp. n., Pitambara trypetoidessp. n., Sarmatoca cathemerinagen. et sp. n., Maracota soulieraegen. et sp. n., and Serida castaneasp. n., and Zeleja thoracalissp. n. from Malaysia. Two new genera, Maracotagen. n. (type species M. soulierae sp. n.) and Sarmatocagen. n. (type species S. cathemerina sp. n.), and a new subgenus Zelomachasubgen. n. (type species Zeleja thoracalis sp. n.) in the genus Zeleja are erected. The genus Binaluana Soulier-Perkins et Stroiński is downgraded to a subgenus of Zeleja Melichar. The genus Silvispina Wang et Soulier-Perkins with an uncertain systematic position is attributed to the subfamily Lophopinae and the tribe Lophopini. The placement of the genus Elasmoscelis Spinola (and, correspondingly, the tribe Elasmoscelini) in the subfamily Menoscinae, the genus Epiptyxis Gerstaecker in the tribe Menoscini, and the genus Jivatma Melichar in the tribe Lophopini is substantiated. New records of 11 species are given from Vietnam, some being first records for this country.     

New Taxa and Host Associations of the Weevil Subfamily Ceutorhynchinae (Coleoptera,Curculionidae) from Thailand

A new subgenus of Mecysmoderes Sch., Enzoellus Korotyaev, subgen. n. (type species Mecysmoderes carinatus Faust), two new genera of the tribe Hypohypurini Colonnelli, Siamohypurus Korotyaev, gen. n. (type species S. samuelsoni Korotyaev, sp. n.), Glikmanellus Korotyaev, gen. n. (type species G. rosti Korotyaev, sp. n.) and eleven new species of the weevil subfamily Ceutorhynchinae are described: Mecysmoderes (Memecyderes) sarukhanovi Korotyaev, sp. n. from Thailand, M. (Enzoellus) gressitti Korotyaev, sp. n. from Thailand and Laos, M. (Enzoellus) muratovi Korotyaev, sp. n., Megahypurus oroszi Korotyaev, sp. n., Cyphohypurus suppantschitschi Korotyaev, sp. n., Siamohypurus samuelsoni Korotyaev, sp. n., S. attilai Korotyaev, sp. n., Glikmanellus rosti Korotyaev, sp. n., all from Thailand; G. baloghi Korotyaev, sp. n. from Sri Lanka; G. obrieni Korotyaev, sp. n. and G. louisae Korotyaev, sp. n., both from India. A key to three species of Megahypurus from Thailand is given. Host plants are determined for Megahypurus alexandri Kor. and Glikmanellus rosti sp. n. from Koh Kood Island in southern Thailand, which were repeatedly collected from a tree of the family Rubiaceae.     

A review of species of the genus <Emphasis Type="Italic">Tadzhikia</Emphasis> Mistshenko and new data on the distribution of other little known grasshoppers of the family Tettigoniidae (Orthoptera) in Tajikistan

A review of the genus Tadzhikia of the fauna of Tajikistan and adjacent countries is given with data on the distribution of all the species. Tadzhikia beybienkoi langarica subsp. n. is described from Tajikistan. New data on the distribution of Glyphonotus thoracicus (F.-W.), Ceraeocercus fuscipennis Uv., and Semenoviana tadzhika (B.-Bien.) are presented.     

New Data on the Taxonomy and Distribution of Flat Moths of the Genus <Emphasis Type="Italic">Agonopterix</Emphasis> Hübner, [1825] (Lepidoptera,Depressariidae) of the Russian Fauna

New data on the distribution and taxonomy of Agonopterix species in Russia are given. The following new synonymy is established: Agonopterix anticella (Erschoff, 1877) = A. abjectella (Christoph, 1882), syn. n., = A. japonica Saito, 1980, syn. n.; A. pullella Hannemann, 1971 = A. dubatolovi Lvovsky, 1995, syn. n. A new species A. volgensissp. n. is described from the Middle Volga Region. Two species are recorded from Russia for the first time, both represented by new subspecies: A. ivinskisi daghestanicasubsp. n. from Daghestan and Armenia, and A. kisojiana dilutasubsp. n. from the southern part of the Russian Far East.     

Review of the <Emphasis Type="Italic">granulosus</Emphasis> Subgroup of the Weevil Genus <Emphasis Type="Italic">Plinthus</Emphasis> (Coleoptera,Curculionidae)

The granulosus subgroup of Plinthus is revised. Plinthus frivaldszkyi Davidian et Savitsky, sp. n. and P. mananauricus Davidian et Savitsky, sp. n. from the Caucasus are described. New data on the morphology and geographic distribution of P. granulosus Reitter, 1884, P. abdurakhmanovi Davidian, 1995, and P. kataevi Davidian, 1992 and a key to five species of the granulosus subgroup are presented.     

A Survey of the Distribution and Phylogenetic Relationships of the <Emphasis Type="Italic">Silvestrichilis</Emphasis> Group of Genera and of the Species of the Genus <Emphasis Type="Italic">Silvestrichilis</Emphasis> Wygodz. (Archaeognatha,Machilidae) with Description of a New Species from South Ossetia

Review of the six genera of the Silvestrichilis group (Dilta Strand, Haslundiella Janetschek, Silvestrichilis Wygodzinsky, Silvestrichiloides Mendes, Haslundichilis Wygodzinsky, and Himalayachilis Wygodzinsky) and of the 17 species of the southern Palaearctic genus Silvestrichilis was performed for the first time with a discussion of their phylogenetic relationships and evolutionary trends based on comparative analysis of the geographic distribution of the species and of the distribution of plesiomorphic and apomorphic states of their main morphological features. Haslundichilis quadrii Wygodzinsky, 1952 from northwestern India and H. lindbergi Wygodzinsky, 1962 from western Afghanistan are transferred to the genus Haslundiella, and new combinations Haslundiella quadrii (Wygodzinsky, 1952), comb. n. and Haslundiella lindbergi (Wygodzinsky, 1962), comb. n. are established. A new species, Silvestrichilis polinaesp. n., differs from all the congeners in the strongly dilated fore femur of the male and female, in the maxillary palpus chaetotaxy, and in the structure of the sensory field on the fore femur of the male.     

Three new species of <Emphasis Type="Italic">Passiflora</Emphasis> subgenus <Emphasis Type="Italic">Decaloba</Emphasis> (Passifloraceae) from Brazil

Three new species from Brazil are described and illustrated. Passiflora cervii, P. jiboiaensis, and P. transversalis all belong to Passiflora subg. Decaloba.