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1.
The dissemination of stolbur phytoplasma (16Sr‐XIIA group)‐induced yellows diseases depends on the dispersal biology and host plant fidelity of the planthopper vector Hyalesthes obsoletus (Hemiptera: Cixiidae). We analysed the degree of these two properties in H. obsoletus by studying its population genetic structure and stolbur infection rates relative to the two major host plants, Convolvolus arvensis and Urtica dioica, in order to infer relevant divisions for stolbur epidemiology in Swiss viticultural regions. Three regional populations with the potential to determine stolbur epidemiology in distinct ways were identified. First, populations associated with U. dioica in northern Switzerland were most related to genetically distinct U. dioica host race populations identified previously in Germany. Second, populations in central and southwest Switzerland were undifferentiated relative to host plant and likely have wider stolbur transmission breadths than the northern specialized populations. Third, populations in south of the Alps (Ticino) were undifferentiated relative to host plant but geographically isolated from other Swiss regions, thus implying separate population dynamics in this area. The knowledge of these three distinct epidemiological cycles will help to adapt management programmes against stolbur diseases in Swiss vineyards. 相似文献
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3.
Microsatellite markers were first used to partition individuals of European grayling Thymallus thymallus , from the Danube, Rhine and Main, and Elbe drainage systems into subpopulations and to estimate individual immigrant ancestries over the last few generations. Subsequently, the studied populations were 'purged' from recent immigrants and the proportions of evolutionary lineages within the 'purged' populations were re-estimated by applying mtDNA markers. The results confirmed a high level of admixture of the divergent mtDNA lineages ( i.e. natural secondary contact) in populations sampled at the contact zones of the drainages. In addition, a substantial amount of introgression was observed for several populations that were known to be affected by stocking of European grayling from different origins. 相似文献
4.
The potential for gene exchange across ploidy levels has long been recognized, but only a few studies have explored the rate of gene flow among different cytotypes. In addition, most of the existing knowledge comes from contact zones between diploids and tetraploids. The purpose of this paper was to investigate relationships between diploid and hexaploid individuals within the Aster amellus aggregate. A. amellus is known to occur in diploid and hexaploid cytotypes in Europe, with a complex contact zone in central Europe. Patterns of genetic diversity were investigated using seven microsatellite loci at three different spatial scales: (1) in the single known mixed-ploidy population; (2) in populations at the contact zone and (3) in a wider range of populations across Europe. The results show clear separation of the cytotypes at all three spatial scales. In addition, analysis of molecular variance strongly supported a model predicting a single origin of the hexaploids, with no or very limited gene flow between the cytotypes. Some hexaploid individuals found in the mixed-ploidy population, however, fell into the diploid cluster. This could suggest recurrent polyploid formation or occasional cross-pollination between cytotypes; however, there are strong post-zygotic breeding barriers between the two cytotypes, making the latter less plausible. Overall, the results suggest that the cytotypes could represent two cryptic species. Nevertheless, their formal separation is difficult as they cannot be distinguished morphologically, occupy very similar habitat conditions and have largely overlapping distribution ranges. These results show that polyploid complexes must be treated with caution as they can hide biological diversity and can have different adaptation potentials, evolving independently. 相似文献
5.
Carla Cicero Nicholas A. Mason Zheng Oong Pascal O. Title Melissa E. Morales Kevin A. Feldheim Michelle S. Koo Rauri C. K. Bowie 《Ecology and evolution》2022,12(12)
The relationship between ecology and morphology is a cornerstone of evolutionary biology, and quantifying variation across environments can shed light on processes that give rise to biodiversity. Three morphotypes of the Steller''s Jay (Cyanocitta stelleri) occupy different ecoregions in western North America, which vary in climate and landcover. These morphotypes (Coastal, Interior, Rocky Mountain) differ in size, plumage coloration, and head pattern. We sampled 1080 Steller''s Jays from 68 populations (plus 11 outgroups) to address three main questions using data on morphology, plumage, genetics (mtDNA, microsatellites), and ecological niches: (1) How do phenotypic and genetic traits vary within and among populations, morphotypes, and ecoregions? (2) How do population‐level differences in Steller''s Jays compare with other sister species pairs of North American birds? (3) What can we infer about the population history of Steller''s Jays in relation to past climates, paleoecology, and niche evolution? We found substantial morphological, genetic, and ecological differentiation among morphotypes. The greatest genetic divergence separated Coastal and Interior morphotypes from the Rocky Mountain morphotype, which was associated with warmer, drier, and more open habitats. Microsatellites revealed additional structure between Coastal and Interior groups. The deep mtDNA split between Coastal/Interior and Rocky Mountain lineages of Steller''s Jay (ND2 ~ 7.8%) is older than most North American avian sister species and dates to approximately 4.3 mya. Interior and Rocky Mountain morphotypes contact across a narrow zone with steep clines in traits and reduced gene flow. The distribution of the three morphotypes coincides with divergent varieties of ponderosa pine and Douglas fir. Species distribution models support multiple glacial refugia for Steller''s Jays. Our integrative dataset combined with extensive geographic sampling provides compelling evidence for recognizing at least two species of Steller''s Jay. 相似文献
6.
《L'Anthropologie》2016,120(1):69-106
The lower Colorado River is considered the geographical boundary between the Argentinean regions of Pampa and Patagonia. The aim of this study is to define the technological patterns of hunter-gatherer groups who inhabited the studied area during the Late Holocene (3000–250 BP). In order to do so, the nature and presentation of raw materials exploited is stated, and the different methods of débitage and economic analysis of the lithic assemblages are identified, within the theoretical and methodological approach of chaîne opératoire. The results allow concluding that during the Late Holocene the basis of technological knowledge is kept constant. The technological changes experienced in behavior toward the final Late Holocene (1000–250 years BP) are due to the choice among methods, materials, and types of instruments known and available, of those with proven efficacy, whose production was intensified in the last 1000 years BP. The behavioral changes linked to lithic technological system are accompanied by – or produced as a result of – reorganization of the social system as a whole. 相似文献
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P. Martínez † C. Bouza † J. Castro † M. Hermida † B. G. Pardo † L. Sánchez † 《Journal of fish biology》2007,71(SB):195-213
The analysis of 12 microsatellite loci in 16 native populations of Salmo trutta from Duero basin evidenced a strong genetic differentiation in accordance with the existence of two divergent Atlantic mtDNA lineages, Atlantic (AT) and Duero (DU). These lineages were observed spatially segregated mainly in the Lower-course and in the inner part of the basin. Unlike previous isozyme information, microsatellite data suggested a more downstream location of the sharpest genetic divergence in Duero basin and a more complex structure in the inward area. Putative hybrid populations evidenced higher Hardy–Weinberg and gametic disequilibria than pure ones (Pisuerga, Lower-course), not explained by mixture due to differential immigration pattern across the basin. Hybridization indexes suggested a bimodal pattern of hybridization and a higher weight of Pisuerga region in the genetic composition of hybrid samples in accordance with mtDNA data. The results suggested a limited introgression between AT and DU lineages. Taking into account the time of divergence between both lineages, selection and/or genetic incompatibility appeared necessary to explain the genetic structure observed and the ancient location of DU lineage restricted to this area. 相似文献
8.
Andrea Cosacov Alicia N. Sérsic Victoria Sosa Leigh A. Johnson Andrea A. Cocucci 《Journal of Biogeography》2010,37(8):1463-1477
Aim We perform a phylogeographical study of an endemic Patagonian herbaceous plant to assess whether geographical patterns of genetic variation correspond to in situ Pleistocene survival or to glacial retreat and post‐glacial expansion. We also seek to determine the locations of potential glacial refugia and post‐glacial colonization routes. Location Southern Andes and Patagonian steppe. Methods We used Calceolaria polyrhiza, a widely distributed Patagonian herbaceous plant that occurs mainly in the understorey of Nothofagus rain forests and in the arid Patagonian steppe, as our model system. The chloroplast intergenic spacer trnH–psbA was sequenced for 590 individuals from 68 populations. Sequence data were analysed using phylogenetic (maximum parsimony, maximum likelihood and Bayesian inference) and population genetic (spatial analyses of molecular variance, mismatch distributions and neutrality tests) methods. Nested clade phylogeographic analyses, and divergence time estimates using a calibrated molecular clock, were also conducted. Results A total of 27 haplotypes identified in the present study clustered into four primary genealogical lineages, revealing three significant latitudinal phylogeographical breaks. The two high Andean lineages probably split first, during the late Miocene, and the Patagonian lineage split around 4 Ma, coincident with the establishment of the Patagonian steppe. Within each haplogroup, major diversification occurred in the Pleistocene. The Patagonian groups show a pattern consistent with a rapid post‐glacial expansion and colonization of the Andean flanks, achieved independently by four lineages. The highest haplotype diversity was found along a longitudinal transect that is remarkably congruent with the limit of the ice‐sheet extension during the Greatest Patagonian Glaciation. A north‐east expansion is evident, which is probably associated with the ‘Arid Diagonal’ fluctuations. Main conclusions Glacial climate fluctuations had a substantial impact on the diversification, distribution and demography of the study species. A scenario of multiple periglacial Pleistocene refugia and subsequent multiple recolonization routes, from eastern Patagonia to the Andean flanks, may explain the phylogeographical patterns observed. However, current genetic structure also preserves the imprints of older events that probably occurred in the Miocene and Pliocene, providing evidence that multiple processes, operating at different spatial and temporal scales, have moulded biodiversity in Patagonia. 相似文献
9.
We present a pollen record from a fen at the eastern shore of Brazo Sur south of Lago Argentino, Argentina (core BRS 1/06,
50°34′54″S, 72°54′52″W, 198 m a.s.l.). The coring site is located in the transition zone from humid grass steppe to Andean
Nothofagus forest. With the exception of a mid-Holocene sand layer, the record covers the interval between 13,350 and 1,700 cal b.p., indicating that there could have been no recurrence of Late-glacial conditions in Brazo Sur, as has been suggested in the
literature as having been contemporary with the Younger Dryas interval in the northern hemisphere. The Late-glacial and early
Holocene periods at Brazo Sur are characterized by fluctuations between humid grass-dominated steppe associations and drier
ones dominated by Asteraceae and Ericaceae. At the start of the Holocene, the pollen influx increased. Nothofagus dominance began by 7,700 cal b.p. probably due to increasing moisture. Present-day closed Nothofagus forest developed around 2,500 cal b.p., related to a further increase in moisture. 相似文献
10.
Maria Eugenia De Porras Maria Virginia Mancini Aldo Raul Prieto 《Vegetation History and Archaeobotany》2009,18(3):235-244
Vegetation changes during the late Holocene are interpreted from four fossil pollen sequences from two caves at the Los Toldos archaeological locality, Santa Cruz province, Argentina. Taphonomic processes are particularly taken into account in order to analyze the effects on the fossil pollen records of biotic factors such as human occupation and animals, and abiotic ones such as volcanic ash fall. Fossil pollen assemblages are interpreted using local modern pollen data. The main vegetation change occurred at ca. 3750 uncal b.p., when a shrub steppe of Asteraceae subf. Asteroideae with Schinus, Ephedra frustillata and a high proportion of grasses was replaced by a shrub steppe of Colliguaja integerrima and Asteraceae subf. Asteroideae. This change is synchronous with an archaeological record change and could be related either to moderate climatic variations or the effects of ash fall on the environment. Plant communities similar to the present-day ones were established in the Los Toldos area from ca. 3750 uncal b.p. 相似文献
11.
Abstract The production of porcine growth hormone (pGH) from novel expression vectors containing the promoter/enhancer elements of the Moloney murine leukemia virus (MLV) LTR or the human cytomegalovirus (CMV) immediate early gene was examined in transgenic swine. Both fusion genes resulted in elevated levels of serum pGH, elevation of insulin‐like growth factor 1 (IGF‐1), and a pronounced decrease in carcass fat deposition. The two viral promoter/enhancer elements were constitutively active in the transgenic swine throughout the life of the animals. In individual swine, the CMV‐pGH transgene was expressed predominantly in the pancreas while the MLV‐pGH transgene was expressed in a wide variety of tissues. These swine were infertile, had insulin resistance, and demonstrated an accelerated form of osteochondritis dissicans. Our results show that excess pGH produces a phenotype identical to that seen in swine expressing heterologous growth hormones, and provides a baseline for assessing the overall efficiency of producing transgenic swine. Furthermore, our data suggests that unregulated pGH production, even at 15 times normal levels and independent of the tissue source, has adverse effects that outweigh the desired reduction in carcass fat deposition in transgenic swine. 相似文献
12.
Pollen, plant and animal macrofossils recovered from nine Leporillus spp. (Muridae) middens found in the Gap and Coturaundee Ranges, western New South Wales were examined. By comparing current vegetation, pollen from modern surface samples and pollen from midden samples, general vegetation characteristics over the last 6500 years BP were reconstructed. Evidence shows that a greater shrub cover was apparent between 6500 and 5200 BP , while other aspects of the vegetation cover were similar to present. An increase in tree pollen, possibly indicating greater tree cover, occurred around 3400–2600 BP , while vegetation in the last 1300 years was similar to present. These interpretations, particularly from the older samples, are tentative due to spatial and temporal limitations. Animal macrofossils from the middens indicate that several mammal species now extinct or uncommon in western New South Wales have occurred in the area in the past 3000 years. This study also confirms that reconstruction of vegetation from Leporillus spp. midden evidence should be seen as separate ‘snapshots’, rather than continuous records over a stratigraphically defined timescale. 相似文献
13.
Recent evidence suggests that marker‐based heterozygosity‐fitness correlations may be driven by only one or a few markers, indicating local heterozygosity effects caused by linkage disequilibrium with functional genes. In this study, we investigated the relationship between microsatellite heterozygosity and a measure of cell‐mediated immunity (phytohaemagglutinin; PHA) in bluethroat (Luscinia s. svecica) nestlings using a full‐sibling design. We found significant positive associations between PHA response and two different indices of microsatellite heterozygosity, i.e. multi‐locus heterozygosity and mean d2. However, model comparisons disclosed that both associations were more likely caused by local effects rather than general effects and that the two local effects appeared to be realized through two different genetic mechanisms. Our results indicate that both the random assortment of parental chromosomes during meiosis as well as inbreeding can drive heterozygosity‐fitness correlations. 相似文献
14.
Beck JB Alexander PJ Allphin L Al-Shehbaz IA Rushworth C Bailey CD Windham MD 《Evolution; international journal of organic evolution》2012,66(4):985-995
Gametophytic apomixis is a common form of asexual reproduction in plants. Virtually all gametophytic apomicts are polyploids, and some view polyploidy as a prerequisite for the transition to apomixis. However, any causal link between apomixis and polyploidy is complicated by the fact that most apomictic polyploids are allopolyploids, leading some to speculate that hybridization, rather than polyploidy, enables apomixis. Diploid apomixis presents a rare opportunity to isolate the role of hybridization, and a number of diploid apomicts have been documented in the genus Boechera (Brassicaceae). Here, we present the results of a microsatellite study of 1393 morphologically and geographically diverse diploid individuals, evaluating the hypothesis that diploid Boechera apomicts are hybrids. This genus‐wide dataset was made possible by the applicability of a core set of microsatellite loci in 69 of the 70 diploid Boechera species and by our ability to successfully genotype herbarium specimens of widely varying ages. With few exceptions, diploid apomicts exhibited markedly high levels of heterozygosity resulting from the combination of disparate genomes. This strongly suggests that most apomictic diploid Boechera lineages are of hybrid origin, and that the genomic consequences of hybridization allow for the transition to gametophytic apomixis in this genus. 相似文献
15.
This study re‐examined the taxonomic status of the sisorid catfishes usually identified as Glyptothorax zanaensis using a combination of morphometric and molecular data. Our results resurrect Glyptothorax longinema from the synonymy of G. zanaensis, and we describe two previously unnamed species as Glyptothorax granosus sp. nov. and Glyptothorax fucatus sp. nov. All four species are diagnosed and described in detail. Truss‐based morphometrics combined with principal component analysis (PCA) detected three principal components (PCs) that can explain 86% of the total variation amongst species, which mainly reflect the characteristics of body depth, related depth, adhesive apparatus length, pectoral‐fin length, caudal peduncle length, and barbel lengths. We also generated a phylogenetic hypothesis of these species using concatenated mitochondrial cytochrome b and d ‐loop gene sequences. Molecular dating analysis revealed a rapid speciation of Glyptothorax in the south‐eastern corner of the Qinghai‐Xizang Plateau from the middle Pliocene to early Pleistocene. A key to identify the Glyptothorax species from the Salween River drainage is also provided. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 165 , 363–389. 相似文献
16.
JASON M. BUTLER C. KENNETH DODD jr MATT ARESCO JAMES D. AUSTIN 《Biological journal of the Linnean Society. Linnean Society of London》2011,102(4):889-901
Four extant subspecies of Terrapene carolina in eastern North America, Terrapene carolina bauri, Terrapene carolina carolina, Terrapene carolina triunguis, and Terrapene carolina major, are recognized based on morphological studies. A fifth subspecies, Terrapene carolina putnami, has been described from Pleistocene deposits but is very similar morphologically to T. c. major. Questions concerning the relationship of the Gulf Coast box turtle (T. c. major) to other box turtles have been pervasive ever since it was described. We used a combined morphological and genetic analysis to address the status of T. c. major and other T. carolina lineages. Terrapene c. bauri, T. c. carolina, and T. c. triunguis are distinct based on a discriminate function analysis of 25 morphological characters, including characters traditionally used to assign subspecies. The results of the present study confirm that box turtles phenotypically diagnosed as T. c. bauri, T. c. carolina, and T. c. triunguis all occur within the hypothesized range of T. c. major, and that the latter does not possess a diagnosable morphology. The three morphological lineages also possess divergent mitochondrial haplotypes that are present within the hypothesized range of T. c. major. In addition, a fourth distinct mtDNA lineage co‐occurs within the putative range of T. c. major. This unique lineage may include mitochondrial DNA variation from the Pleistocene T. c. putnami. Analysis of nine nuclear DNA microsatellites revealed no population structure in box turtles currently assigned to T. c. major from the Florida Panhandle, suggesting a complete admixture of lineages in this region. The results of the present study indicate that box turtles traditionally assigned to T. c. major based on phenotype are the result of introgression between eastern extant (predominantly T. c. carolina) and an extinct subspecies, T. c. putnami. Published 2011. This article is a US Government work and is in the public domain in the USA. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 102 , 889–901. 相似文献
17.
C. Brouat C. Tollenaere A. Estoup A. Loiseau S. Sommer R. Soanandrasana L. Rahalison M. Rajerison S. Piry J.‐M. Duplantier 《Molecular ecology》2014,23(16):4153-4167
Studies focusing on geographical genetic patterns of commensal species and on human history complement each other and provide proxies to trace common colonization events. On Madagascar, the unintentional introduction and spread of the commensal species Rattus rattus by people may have left a living clue of human colonization patterns and history. In this study, we addressed this question by characterizing the genetic structure of natural populations of R. rattus using both microsatellites and mitochondrial sequences, on an extensive sampling across the island. Such data sets were analysed by a combination of methods using population genetics, phylogeography and approximate Bayesian computation. Our results indicated two introduction events to Madagascar from the same ancestral source of R. rattus, one in the extreme north of the island and the other further south. The latter was the source of a large spatial expansion, which may have initially started from an original point located on the southern coast. The inferred timing of introduction events—several centuries ago—is temporally congruent with the Arabian trade network in the Indian Ocean, which was flourishing from the middle of the first millennium. 相似文献
18.
Weyeneth N Goodman SM Appleton B Wood R Ruedi M 《Journal of evolutionary biology》2011,24(6):1298-1306
Eocene ocean currents and prevailing winds correlate with over-water dispersals of terrestrial mammals from Africa to Madagascar. Since the Early Miocene (about 23 Ma), these currents flowed in the reverse direction, from the Indian Ocean towards Africa. The Comoro Islands are equidistant between Africa and Madagascar and support an endemic land vertebrate fauna that shares recent ancestry predominantly with Madagascar. We examined whether gene flow in two Miniopterus bat species endemic to the Comoros and Madagascar correlates with the direction of current winds, using uni- and bi-parentally inherited markers with different evolutionary rates. Coalescence-based analyses of mitochondrial matrilines support a Pleistocene (approximately 180,000 years ago) colonization event from Madagascar west to the Comoros (distance: 300 km) in the predicted direction. However, nuclear microsatellites show that more recent gene flow is restricted to a few individuals flying against the wind, from Grande Comore to Anjouan (distance: 80 km). 相似文献
19.
Sarah Batson Dean Rea Vilmos Fülp David I. Roper 《Acta Crystallographica. Section F, Structural Biology Communications》2010,66(4):405-408
A recombinant form of Escherichia coli DdlB (EcDdlB) has been prepared and cocrystallized with ADP and d ‐alanyl‐d ‐alanine to represent the ternary complex of EcDdlB. Furthermore, EcDdlB has been cocrystallized under the same conditions with the ligands ATP and d ‐alanyl‐d ‐alanine, representing the product‐inhibited complex. The crystals belonged to space group P212121, with unit‐cell parameters a = 53.0, b = 97.6, c = 109.5 Å and a = 51.2, b = 97.8, c = 110.1 Å, respectively, and both contained two molecules in the asymmetric unit. Complete data sets were collected to 1.5 and 1.4 Å resolution, respectively, from single crystals under cryogenic conditions using synchrotron radiation. 相似文献
20.
Sophie Arnaud-Haond Marianna Migliaccio Elena Diaz-Almela Sara Teixeira Mirjiam Susanne van de Vliet Filipe Alberto Gabriele Procaccini Carlos M. Duarte Ester A. Serrão 《Journal of Biogeography》2007,34(6):963-976
Aim The seagrass, Posidonia oceanica is a clonal angiosperm endemic to the Mediterranean Sea. Previous studies have suggested that clonal growth is far greater than sexual recruitment and thus leads to low clonal diversity within meadows. However, recently developed microsatellite markers indicate that there are many different genotypes, and therefore many distinct clones present. The low resolution of markers used in the past limited our ability to estimate clonality and assess the individual level. New high‐resolution dinucleotide microsatellites now allow genetically distinct individuals to be identified, enabling more reliable estimation of population genetic parameters across the Mediterranean Basin. We investigated the biogeography and dispersal of P. oceanica at various spatial scales in order to assess the influence of different evolutionary factors shaping the distribution of genetic diversity in this species. Location The Mediterranean. Methods We used seven hypervariable microsatellite markers, in addition to the five previously existing markers, to describe the spatial distribution of genetic variability in 34 meadows spread throughout the Mediterranean, on the basis of an average of 35.6 (± 6.3) ramets sampled. Results At the scale of the Mediterranean Sea as a whole, a strong east–west cleavage was detected (amova) . These results are in line with those obtained using previous markers. The new results showed the presence of a putative secondary contact zone at the Siculo‐Tunisian Strait, which exhibited high allelic richness and shared alleles absent from the eastern and western basins. F statistics (pairwise θ ranges between 0.09 and 0.71) revealed high genetic structure between meadows, both at a small scale (about 2 to 200 km) and at a medium scale within the eastern and western basins, independent of geographical distance. At the intrameadow scale, significant spatial autocorrelation in six out of 15 locations revealed that dispersal can be restricted to the scale of a few metres. Main conclusions A stochastic pattern of effective migration due to low population size, turnover and seed survival is the most likely explanation for this pattern of highly restricted gene flow, despite the importance of an a priori seed dispersal potential. The east–west cleavage probably represents the outline of vicariance caused by the last Pleistocene ice age and maintained to this day by low gene flow. These results emphasize the diversity of evolutionary processes shaping the genetic structure at different spatial scales. 相似文献