Body size changes in bivalves of the family Limidae in the aftermath of the end‐Triassic mass extinction: the Brobdingnag effect

Reduction in body size of organisms following mass extinctions is well‐known and often ascribed to the Lilliput effect. This phenomenon is expressed as a temporary body size reduction within surviving species. Despite its wide usage the term is often loosely applied to any small post‐extinction taxa. Here we assess the size of bivalves of the family Limidae (Rafineque) prior to, and in the aftermath of, the end‐Triassic mass extinction event. Of the species studied only one occurs prior to the extinction event, though is too scarce to test for the Lilliput effect. Instead, newly evolved species originate at small body sizes and undergo a within‐species size increase, most dramatically demonstrated by Plagiostoma giganteum (Sowerby) which, over two million years, increases in size by 179%. This trend is seen in both field and museum collections. We term this within‐species size increase of newly originated species in the aftermath of mass extinction, the Brobdingnag effect, after the giants that were contemporary with the Lilliputians in Swift's Gulliver's Travels. The size increase results from greater longevity and faster growth rates. The cause of the effect is unclear, although it probably relates to improved environmental conditions. Oxygen‐poor conditions in the Early Jurassic are associated with populations of smaller body size caused by elevated juvenile mortality but these are local/regional effects that do not alter the long‐term, size increase. Although temperature‐size relationships exist for many organisms (Temperature‐Size Rule and Bergmann's Rule), the importance of this is unclear here because of a poorly known Early Jurassic temperature record.     

Phanerozoic survivors: Actinopterygian evolution through the Permo‐Triassic and Triassic‐Jurassic mass extinction events

Actinopterygians (ray‐finned fishes) successfully passed through four of the big five mass extinction events of the Phanerozoic, but the effects of these crises on the group are poorly understood. Many researchers have assumed that the Permo‐Triassic mass extinction (PTME) and end‐Triassic extinction (ETE) had little impact on actinopterygians, despite devastating many other groups. Here, two morphometric techniques, geometric (body shape) and functional (jaw morphology), are used to assess the effects of these two extinction events on the group. The PTME elicits no significant shifts in functional disparity while body shape disparity increases. An expansion of body shape and functional disparity coincides with the neopterygian radiation and evolution of novel feeding adaptations in the Middle‐Late Triassic. Through the ETE, small decreases are seen in shape and functional disparity, but are unlikely to represent major changes brought about by the extinction event. In the Early Jurassic, further expansions into novel areas of ecospace indicative of durophagy occur, potentially linked to losses in the ETE. As no evidence is found for major perturbations in actinopterygian evolution through either extinction event, the group appears to have been immune to two major environmental crises that were disastrous to most other organisms.     

Victims of the Early Toarcian anoxic event: the radiation and extinction of Jurassic Koninckinidae (Brachiopoda)

The significant mass extinction attributed to the Early Toarcian anoxic event had a severe impact on the phylum Brachiopoda. Beyond a serious decrease of species diversity, the extinction of the orders Spiriferidina and Athyridida is connected with this episode. The order Athyridida was represented by the family Koninckinidae in the Early Jurassic. The stratigraphical and geographical distribution of the three Early Jurassic koninckinid genera ( Koninckella, Koninckodonta, Amphiclinodonta ) shows a definite radiative pattern. The number of their nominal species increased from 2 to 17 from the Sinemurian to Early Toarcian; in the same time interval, their area increased from the Alpine region to the whole Mediterranean and the NW-European domains. This radiative evolution can be explained as the result of different factors: (1) morphological adaptation to muddy bottoms, (2) fundamental changes in the current pattern in the Tethys/Laurasian Seaway, and, possibly, (3) utilization of methane-based chemosynthesis as alternative food source. The radiation of koninckinids, leading from the cryptic habitats of the Tethyan rocky floors to the extensive muddy bottoms of the open European shelves, was abruptly terminated by the anoxic event in the Early Toarcian Falciferum Zone. The main causes of the extinction might be: (1) the excessive warming of Tethyan deep waters by thermohaline circulation, (2) the anoxic event, which was not survived by the spire-bearers, handicapped by their stiff, calcareous spiralia. Brachiopoda, Early Jurassic, Europe, extinction, Koninckinidae, radiation, Tethys.     

Impact of the Late Triassic mass extinction on functional diversity and composition of marine ecosystems

Mass extinctions have profoundly influenced the history of life, not only through the death of species but also through changes in ecosystem function and structure. Importantly, these events allow us the opportunity to study ecological dynamics under levels of environmental stress for which there are no recent analogues. Here, we examine the impact and selectivity of the Late Triassic mass extinction event on the functional diversity and functional composition of the global marine ecosystem, and test whether post‐extinction communities in the Early Jurassic represent a regime shift away from pre‐extinction communities in the Late Triassic. Our analyses show that, despite severe taxonomic losses, there is no unequivocal loss of global functional diversity associated with the extinction. Even though no functional groups were lost, the extinction event was, however, highly selective against some modes of life, in particular sessile suspension feeders. Although taxa with heavily calcified skeletons suffered higher extinction than other taxa, lightly calcified taxa also appear to have been selected against. The extinction appears to have invigorated the already ongoing faunal turnover associated with the Mesozoic Marine Revolution. The ecological effects of the Late Triassic mass extinction were preferentially felt in the tropical latitudes, especially amongst reefs, and it took until the Middle Jurassic for reef ecosystems to fully recover to pre‐extinction levels.     

Amniotes through major biological crises: faunal turnover among Parareptiles and the end‐Permian mass extinction

Abstract: The Parareptilia are a small but ecologically and morphologically diverse clade of Permian and Triassic crown amniotes generally considered to be phylogenetically more proximal to eureptiles (diapsids and their kin) than to synapsids (mammals and their kin). A recent supertree provides impetus for an analysis of parareptile diversity through time and for examining the influence of the end‐Permian mass extinction on the clade’s origination and extinction rates. Phylogeny‐corrected measures of diversity have a significant impact on both rates and the distribution of origination and extinction intensities. Time calibration generally results in a closer correspondence between origination and extinction rate values than in the case of no time correction. Near the end‐Permian event, extinction levels are not significantly higher than origination levels, particularly when time calibration is introduced. Finally, regardless of time calibration and/or phylogenetic correction, the distribution of rates does not differ significantly from unimodal. The curves of rate values are discussed in the light of the numbers and distributions of both range extensions and ghost lineages. The disjoint time distributions of major parareptile clades (e.g. procolophonoids and nycteroleterids‐pareiasaurs) are mostly responsible for the occurrence of long‐range extensions throughout the Permian. Available data are not consistent with a model of sudden decline at the end‐Permian but rather suggest a rapid alternation of originations and extinctions in a number of parareptile groups, both before and after the Permian/Triassic boundary.     

The cranial morphology of Kayentachelys,an Early Jurassic cryptodire,and the early history of turtles

Gaffney, E.S. and Jenkins, F.A., Jr. 2010. The cranial morphology of Kayentachelys, an Early Jurassic cryptodire, and the early history of turtles. — Acta Zoologica (Stockholm) 91 : 335–368 The skull morphology of Kayentachelys aprix Gaffney et al., 1987 , a turtle from the Early Jurassic Kayenta Fm of northern Arizona, demonstrates the presence of cryptodiran synapomorphies in agreement with Gaffney et al. (1987, 1991, 2007) , and contrary to the conclusions of Sterli and Joyce (2007) , Joyce (2007) , Sterli (2008) , and Anquetin et al. (2008) . Specific characters found in Kayentachelys and diagnostic of cryptodires include the processus trochlearis oticum, the curved processus pterygoideus externus with a vertical plate, and the prefrontal–vomer contact, which are confirmed as absent in the outgroups, specifically the Late Triassic Proganochelys. The Joyce (2007) analysis suffers from the reduction of the signal from skull characters, with a consequently greater reliance on shell characters, resulting in pleurodires being resolved at various positions within the cryptodires. Kayentachelys reveals what a primitive cryptodire would be expected to look like: a combination of primitive and derived characters, with the fewer derived characters providing the best test of its relationships to other turtles. Although incompletely known, the Mid‐Late Jurassic Condorchelys, Heckeremys, and Eileanchelys may be early cryptodires close to Kayentachelys. We confirm the Late Triassic Proterochersis as a pleurodire, dating the pleurodire–cryptodire split as Late Triassic or earlier.     

Recovery of benthic marine communities from the end‐Permian mass extinction at the low latitudes of eastern Panthalassa

Based on the quantitative community analysis using species‐level identifications, we track the restoration of benthic ecosystems after the end‐Permian mass extinction throughout the Lower Triassic of the western USA. New data on the palaeoecology of the Thaynes Group and Sinbad Formation are provided, which fill a gap between the recently studied palaeoecology of the Griesbachian–Dienerian Dinwoody Formation and the Spathian Virgin Formation. In the Sinbad Formation and Thaynes Group, 17 species (12 genera) of bivalves, 7 species and genera of gastropods and 2 species and genera of brachiopods are recognized. The new bivalve genus Confusionella (Pteriidae) is described. A comprehensive review of the whole Lower Triassic succession of benthic ecosystems of the western USA indicates that mid‐ and inner shelf environments show incipient recovery signals around the Griesbachian–Dienerian transition, during the Smithian and, most profound, during the early Spathian. Ecological data from youngest strata of the Dinwoody Formation as well as stratigraphic ranges of species suggest that the late Dienerian was likely a time interval of environmental stress for benthic ecosystems. Despite some evidence for short‐term environmental disturbances (e.g. shift of dominant taxa, transient drop in alpha‐diversity) during the Smithian–Spathian transition, benthic ecosystems did not show any notable taxonomic turnover at that time, in contrast to the major crisis that affected ammonoids and conodonts. Whereas alpha‐diversity of benthic communities generally increased throughout the Early Triassic, beta‐diversity remained low, which reflects a persistently wide environmental range of benthic species. This observation is in accordance with a recently proposed model that predicts a time lag between increasing within‐habitat diversity (alpha‐diversity) and the onset of taxonomic differentiation between habitats (beta‐diversity) during biotic recoveries from mass extinction events. The observation that beta‐diversity had not significantly increased during the Early Triassic might also provide an explanation for the comparably sluggish increase in benthic diversity during that time, which has previously been attributed to persistent environmental stress.     

Competition in slow motion: the unusual case of benthic marine communities in the wake of the end‐Permian mass extinction

Changes of community structure in response to competition usually take place on timescales that are much too short to be visible in the geological record. Here we report the notable exception of a benthic marine community in the wake of the end‐Permian mass extinction, which is associated with the microbial limestone facies of the earliest Triassic of South China. The newly reported fauna is well preserved and extraordinarily rich (30 benthic macroinvertebrate species, including the new species Astartella? stefaniae (Bivalvia) and Eucochlis obliquecostata (Gastropoda)) and stems from an environmentally stable setting providing favourable conditions for benthic organisms. Whereas changes in the taxonomic composition are negligible over the observed time interval of 10–100 ka, three ecological stages are identified, in which relative abundances of initially rare species continuously increased at the cost of previously dominant species. Concomitant with the changes of dominant species is an increase in faunal evenness and heterogeneity. In the absence of both environmental and taxonomic changes, we attribute this pattern to the long‐term effects of interspecific competition, which acted at an unusually slow pace because the number of competing species and potential immigrants was dramatically reduced by the end‐Permian mass extinction. We suggest that these non‐actualistic conditions led to decreased rates of niche differentiation and hence to the delayed rediversification of benthos that characterizes the aftermath of the greatest Phanerozoic mass extinction event. A hyperbolic diversification model is proposed, which accounts for the positive relationship between the intensity of interspecific competition and the rate of niche differentiation and resolves the conundrum of delayed rediversification at a time when niche space was largely vacated.     

Faunal response to sea‐level and climate change in a short‐lived seaway: Jurassic of the Western Interior,USA

Understanding how regional ecosystems respond to sea‐level and environmental perturbations is a main challenge in palaeoecology. Here we use quantitative abundance estimates, integrated within a sequence stratigraphic and environmental framework, to reconstruct benthic community changes through the 13 myr history of the Jurassic Sundance Seaway in the western United States. Sundance Seaway communities are notable for their low richness and high dominance relative to most areas globally in the Jurassic, and this probably reflects steep temperature and salinity gradients along the 2000 km length of the Seaway that hindered colonization of species from the open ocean. Ordination of samples shows a main turnover event at the Middle–Upper Jurassic transition, which coincided with a shift from carbonate to siliciclastic depositional systems in the Seaway, probably initiated by northward drift from subtropical latitudes to more humid temperate latitudes, and possibly global cooling. Turnover was not uniform across the onshore–offshore gradient, but was higher in offshore environments. The higher resilience of onshore communities to third‐order sea‐level fluctuations and to the change from a carbonate to a siliciclastic system was driven by a few abundant eurytopic species that persisted from the opening to the closing of the Seaway. Lower stability in offshore facies was instead controlled by the presence of more volatile stenotopic species. Such increased onshore stability in community composition contrasts with the well‐documented onshore increase in taxonomic turnover rates, and this study underscores how ecological analyses of relative abundance may contrast with taxonomically based analyses. We also demonstrate the importance of a stratigraphic palaeobiological approach to reconstructing the links between environmental and faunal gradients, and how their evolution through time produces local stratigraphic changes in community composition.     

New and little-known grylloblattids of the family Geinitziidae (Insecta: Grylloblattida) from the Triassic and Jurassic of Europe,Asia, and South Africa

The fossil history of the family Geinitziidae is reviewed. New taxa are described in the family: Shurabia hissarica, sp. nov. (Lower Jurassic of Tajikistan), Sh. shartegica, sp. nov. (Upper Jurassic of Mongolia), Sh. serrata, sp. nov. and Ginitzia sagulensis, sp. nov. (both Lower Jurassic of Kyrgyzstan). The subfamily Stegopterinae Sharov, 1961 is synonymized under Geinitziinae Handlirsch, 1906. The genera Minesedes Fujiyama, 1973 and Ominea Fujiyama, 1973 (Upper Triassic of Japan) are synonymized under Shurabia Martynov, 1937 and Geinitzia Handlirsch, 1906, respectively. Geinitzia varia Bode, 1953 (Lower Jurassic of Germany) and Fletchizia picturata Riek, 1976 (Upper Triassic of South Africa) are redescribed from their holotypes. F. kapokraalensis Wappler, 2001 and F. aleda Wappler, 2001 (both Upper Triassic of South Africa) are transferred to the genus Shurabia.     

The Luoping biota: exceptional preservation, and new evidence on the Triassic recovery from end-Permian mass extinction

The timing and nature of biotic recovery from the devastating end-Permian mass extinction (252 Ma) are much debated. New studies in South China suggest that complex marine ecosystems did not become re-established until the middle–late Anisian (Middle Triassic), much later than had been proposed by some. The recently discovered exceptionally preserved Luoping biota from the Anisian Stage of the Middle Triassic, Yunnan Province and southwest China shows this final stage of community assembly on the continental shelf. The fossil assemblage is a mixture of marine animals, including abundant lightly sclerotized arthropods, associated with fishes, marine reptiles, bivalves, gastropods, belemnoids, ammonoids, echinoderms, brachiopods, conodonts and foraminifers, as well as plants and rare arthropods from nearby land. In some ways, the Luoping biota rebuilt the framework of the pre-extinction latest Permian marine ecosystem, but it differed too in profound ways. New trophic levels were introduced, most notably among top predators in the form of the diverse marine reptiles that had no evident analogues in the Late Permian. The Luoping biota is one of the most diverse Triassic marine fossil Lagerstätten in the world, providing a new and early window on recovery and radiation of Triassic marine ecosystems some 10 Myr after the end-Permian mass extinction.     

Age‐associated de‐repression of retrotransposons in the Drosophila fat body,its potential cause and consequence

Eukaryotic genomes contain transposable elements (TE) that can move into new locations upon activation. Since uncontrolled transposition of TEs, including the retrotransposons and DNA transposons, can lead to DNA breaks and genomic instability, multiple mechanisms, including heterochromatin‐mediated repression, have evolved to repress TE activation. Studies in model organisms have shown that TEs become activated upon aging as a result of age‐associated deregulation of heterochromatin. Considering that different organisms or cell types may undergo distinct heterochromatin changes upon aging, it is important to identify pathways that lead to TE activation in specific tissues and cell types. Through deep sequencing of isolated RNAs, we report an increased expression of many retrotransposons in the old Drosophila fat body, an organ equivalent to the mammalian liver and adipose tissue. This de‐repression correlates with an increased number of DNA damage foci and decreased level of Drosophila lamin‐B in the old fat body cells. Depletion of the Drosophila lamin‐B in the young or larval fat body results in a reduction of heterochromatin and a corresponding increase in retrotransposon expression and DNA damage. Further manipulations of lamin‐B and retrotransposon expression suggest a role of the nuclear lamina in maintaining the genome integrity of the Drosophila fat body by repressing retrotransposons.     

A well‐preserved isopod from the Middle Jurassic of southern Germany and implications for the isopod fossil record

A new isopod species, Eonatatolana geisingensis gen. et sp. nov., is described from Middle Jurassic shallow‐water sediments of southern Germany. It shows not only the almost completely preserved dorsal morphology but, in addition, details of the cephalic appendages, the pereiopods, pleopods and uropods. The presence of ambulatory pereiopods I–VII of a wide tridentate mandibular incisor with prominently developed posteriormost tooth and a narrow frontal lamina indicates that the new species belongs to the subfamily Conilerinae of family Cirolanidae within the suborder Cymothoida. It is closer to the species of the modern genus NatatolanaBruce than to any fossil isopod hitherto described. The isopod fossil record as well as current practices of isopod taxonomy in palaeontology are discussed, and the facies distribution and fossilization of isopods is reviewed with examples from the Jurassic.     

CO2 emissions from land‐use change affected more by nitrogen cycle,than by the choice of land‐cover data

The high uncertainty in land‐based CO₂ fluxes estimates is thought to be mainly due to uncertainty in not only quantifying historical changes among forests, croplands, and grassland, but also due to different processes included in calculation methods. Inclusion of a nitrogen (N) cycle in models is fairly recent and strongly affects carbon (C) fluxes. In this study, for the first time, we use a model with C and N dynamics with three distinct historical reconstructions of land‐use and land‐use change (LULUC) to quantify LULUC emissions and uncertainty that includes the integrated effects of not only climate and CO₂ but also N. The modeled global average emissions including N dynamics for the 1980s, 1990s, and 2000–2005 were 1.8 ± 0.2, 1.7 ± 0.2, and 1.4 ± 0.2 GtC yr^?1, respectively, (mean and range across LULUC data sets). The emissions from tropics were 0.8 ± 0.2, 0.8 ± 0.2, and 0.7 ± 0.3 GtC yr^?1, and the non tropics were 1.1 ± 0.5, 0.9 ± 0.2, and 0.7 ± 0.1 GtC yr^?1. Compared to previous studies that did not include N dynamics, modeled net LULUC emissions were higher, particularly in the non tropics. In the model, N limitation reduces regrowth rates of vegetation in temperate areas resulting in higher net emissions. Our results indicate that exclusion of N dynamics leads to an underestimation of LULUC emissions by around 70% in the non tropics, 10% in the tropics, and 40% globally in the 1990s. The differences due to inclusion/exclusion of the N cycle of 0.1 GtC yr^?1 in the tropics, 0.6 GtC yr^?1 in the non tropics, and 0.7 GtC yr^?1 globally (mean across land‐cover data sets) in the 1990s were greater than differences due to the land‐cover data in the non tropics and globally (0.2 GtC yr^?1). While land‐cover information is improving with satellite and inventory data, this study indicates the importance of accounting for different processes, in particular the N cycle.     

Microaerophilic Fe‐oxidizing micro‐organisms in Middle Jurassic ferruginous stromatolites and the paleoenvironmental context of their formation (Southern Carpathians,Romania)

Ferruginous stromatolites occur associated with Middle Jurassic condensed deposits in several Tethyan and peri‐Tethyan areas. The studied ferruginous stromatolites occurring in the Middle Jurassic condensed deposits of Southern Carpathians (Romania) preserve morphological, geochemical, and mineralogical data that suggest microbial iron oxidation. Based on their macrofabrics and accretion patterns, we classified stromatolites: (1) Ferruginous microstromatolites associated with hardground surfaces and forming the cortex of the macro‐oncoids and (2) Domical ferruginous stromatolites developed within the Ammonitico Rosso‐type succession disposed above the ferruginous microstromatolites (type 1). Petrographic and scanning electron microscope (SEM) examinations reveal that different types of filamentous micro‐organisms were the significant framework builders of the ferruginous stromatolitic laminae. The studied stromatolites yield a large range of δ⁵⁶Fe values, from ?0.75‰ to +0.66‰ with predominantly positive values indicating the prevalence of partial ferrous iron oxidation. The lowest negative δ⁵⁶Fe values (up to ?0.75‰) are present only in domical ferruginous stromatolites samples and point to initial iron mobilization where the Fe(II) was produced by dissimilatory Fe(III) reduction of ferric oxides by Fe(III)‐reducing bacteria. Rare‐earth elements and yttrium (REE + Y) are used to decipher the nature of the seawater during the formation of the ferruginous stromatolites. Cerium anomalies display moderate to small negative values for the ferruginous microstromatolites, indicating weakly oxygenated conditions compatible with slowly reducing environments, in contrast to the domical ferruginous stromatolites that show moderate positive Ce anomalies suggesting that they formed in deeper, anoxic–suboxic waters. The positive Eu anomalies from the studied samples suggest a diffuse hydrothermal input on the seawater during the Middle Jurassic on the sites of ferruginous stromatolite accretion. This study presents the first interpretation of REE + Y in the Middle Jurassic ferruginous stromatolites of Southern Carpathians, Romania.     

藏北双湖地区早Toarcian期大洋缺氧事件:沉积学、古生物学及地球化学特征

藏北羌塘盆地双湖地区发现一套以灰黑色油页岩、泥岩、泥灰岩互层为特征的岩相组合,其粘土矿物主要为伊利石、高岭石、绿泥石、伊利石/蒙脱石混层,伊利石相对含量为38%~66%,高岭石为6%~14%,绿泥石为1%~6%,而伊利石/蒙脱石混层为21%~53%。该套地层含有丰富的菊石化石和钙质超微化石─颗石藻。该层位发现早侏罗世早Toarcian期Harpoceras sp.菊石,它与欧洲广泛出现的早Toarcian期大洋缺氧事件的地层相当。通过分析,该地层有机碳含量最高可达26.1%,有机碳同位素组成为-26.22‰~-23.53‰(PDB)。在地层剖面上,油页岩的δ13C干酪根变化曲线显示明显的正偏移,偏移量接近2.17‰,与欧洲早Toarcian期缺氧事件地层同位素异常有很好的可比性。有机C/N原子比值为6~43,变化趋势与δ13C干酪根曲线一致。通过对双湖油页岩有机地球化学与生物组合特征的研究,初步认为δ13C干酪根异常受到海平面、生物生产率的控制,黑色页岩特别是油页岩的富集可能与古海洋中颗石藻的勃发及高产率有关。     

Embryonic shell structure of Early–Middle Jurassic belemnites,and its significance for belemnite expansion and diversification in the Jurassic

Early Jurassic belemnites are of particular interest to the study of the evolution of skeletal morphology in Lower Carboniferous to the uppermost Cretaceous belemnoids, because they signal the beginning of a global Jurassic–Cretaceous expansion and diversification of belemnitids. We investigated potentially relevant, to this evolutionary pattern, shell features of Sinemurian–Bajocian Nannobelus, Parapassaloteuthis, Holcobelus and Pachybelemnopsis from the Paris Basin. Our analysis of morphological, ultrastructural and chemical traits of the earliest ontogenetic stages of the shell suggests that modified embryonic shell structure of Early–Middle Jurassic belemnites was a factor in their expansion and colonization of the pelagic zone and resulted in remarkable diversification of belemnites. Innovative traits of the embryonic shell of Sinemurian–Bajocian belemnites include: (1) an inorganic–organic primordial rostrum encapsulating the protoconch and the phragmocone, its non‐biomineralized component, possibly chitin, is herein detected for the first time; (2) an organic rich closing membrane which was under formation. It was yet perforated and possessed a foramen; and (3) an organic rich pro‐ostracum earlier documented in an embryonic shell of Pliensbachian Passaloteuthis. The inorganic–organic primordial rostrum tightly coating the protoconch and phragmocone supposedly enhanced protection, without increase in shell weight, of the Early Jurassic belemnites against explosion in deep‐water environment. This may have increased the depth and temperature ranges of hatching eggs, accelerated the adaptation of hatchlings to a nektonic mode of life and promoted increasing diversity of belemnoids. This study supports the hypothesis that belemnite hatchlings were ‘a miniature of the adults’.     

Long‐term evolutionary and ecological responses of calcifying phytoplankton to changes in atmospheric CO2

Calcifying phytoplankton play an important role in marine ecosystems and global biogeochemical cycles, affecting the transfer of both organic and inorganic carbon from the surface to the deep ocean. Coccolithophores are the most prominent members of this group, being well adapted to low‐nutrients environments (e.g., subtropical gyres). Despite urgent concerns, their response to rising atmospheric carbon dioxide levels (pCO₂) and ocean acidification is still poorly understood, and short‐term experiments may not extrapolate into longer‐term climatic adaptation. Current atmospheric pCO₂ (~390 ppmv) is unprecedented since at least 3 million years ago (Ma), and levels projected for the next century were last seen more than 34 Ma. Hence, a deep‐time perspective is needed to understand the long‐term effects of high pCO₂ on the biosphere. Here we combine a comprehensive fossil data set on coccolithophore cell size with a novel measure of ecological prominence: Summed Common Species Occurrence Rate (SCOR). The SCOR is decoupled from species richness, and captures changes in the extent to which coccolithophores were common and widespread, based on global occurrences in deep‐sea sediments. The size and SCOR records are compared to state‐of‐the‐art data on climatic and environmental changes from 50 to 5 Ma. We advance beyond simple correlations and trends to quantify the relative strength and directionality of information transfer among these records. Coccolithophores were globally more common and widespread, larger, and more heavily calcified in the pre‐34 Ma greenhouse world, and declined along with pCO₂ during the Oligocene (34–23 Ma). Our results suggest that atmospheric pCO₂ has exerted an important long‐term control on coccolithophores, directly through its availability for photosynthesis or indirectly via weathering supply of resources for growth and calcification.     

Exploring the power of Bayesian birth‐death skyline models to detect mass extinction events from phylogenies with only extant taxa

Mass extinction events (MEEs), defined as significant losses of species diversity in significantly short time periods, have attracted the attention of biologists because of their link to major environmental change. MEEs have traditionally been studied through the fossil record, but the development of birth‐death models has made it possible to detect their signature based on extant‐taxa phylogenies. Most birth‐death models consider MEEs as instantaneous events where a high proportion of species are simultaneously removed from the tree (“single pulse” approach), in contrast to the paleontological record, where MEEs have a time duration. Here, we explore the power of a Bayesian Birth‐Death Skyline (BDSKY) model to detect the signature of MEEs through changes in extinction rates under a “time‐slice” approach. In this approach, MEEs are time intervals where the extinction rate is greater than the speciation rate. Results showed BDSKY can detect and locate MEEs but that precision and accuracy depend on the phylogeny's size and MEE intensity. Comparisons of BDSKY with the single‐pulse Bayesian model, CoMET, showed a similar frequency of Type II error and neither model exhibited Type I error. However, while CoMET performed better in detecting and locating MEEs for smaller phylogenies, BDSKY showed higher accuracy in estimating extinction and speciation rates.