Performance of a species distribution model based on presence/absence for various population sizes in the amphidromous fish species Sicyopterus japonicus

We formulated a species distribution model (SDM) for the amphidromous fish Sicyopterus japonicus on the basis of presence/absence data and confirmed its performance at various population densities. The best-fit SDM selected several environmental factors, including water depth and velocity, and performed validated prediction of presence/absence of various densities. The predicted probability of occurrence was positively correlated with the observed density. The density was positively related to habitat occupancy, suggesting that this species occupied a wide range of habitats under high densities, but only optimal habitat under low densities. Therefore, the threshold value for predicting presence/absence increased with decreasing densities.     

The distribution of salmonids in upland streams in relation to depth and gradient

The distribution of various age classes of salmon and trout was assessed in upland streams by electrofishing. Water depths and site gradients were measured and correlated to fish densities. The fry of both species were significantly more abundant in shallow water; up to 75·3% of salmon fry and 72·2% of trout fry were captured in sites of mean depth < 20 cm. Older trout were found mainly in the deeper areas, with a maximum of 7·4% captured in sites < 20 cm mean depth. Yearling fish were found in all the depth-ranges sampled, but with a tendency for higher numbers in mid-range depths. There were similar correlations in the abundance of each age class with the actual areas of shallow, mid-range and deep water habitat available within sites. Correlations of fish density with gradient indicated that trout were limited in their distribution to areas of lower flow, whereas salmon were not. Since depth and gradient were significantly negatively correlated, there was an apparent preference of trout for slightly deeper habitats than the equivalent year classes of salmon. The observed habitat segregation is discussed in terms of competition and selection.     

Habitat-specific effects of particle size, current velocity, water depth, and predation risk on size-dependent crayfish distribution

This study assessed effects of abiotic (current velocity, water depth, particle size) and biotic (predation risk for crayfish, size distribution and densities of predatory fish) variables on habitat- and size-specific distribution patterns of lotic crayfish (Orconectes obscurus) using field surveys and tethering experiments. Additionally, particle size manipulations were used with predation assays to assess habitat-specific interactions since the average particle size increased from deep pools to shallow pools to riffles. Large crayfish had the highest densities in deep pools and were associated with increased water depth, whereas small and medium crayfish had the highest densities in shallow pools and were strongly associated with increased particle size and decreased water depth. Regardless of size, crayfish in deep pools had significantly lower survival than in shallow pools and riffles. However, only small crayfish showed consistent differences in predation risk by habitat type and were significantly more vulnerable to predation than larger crayfish. Additionally, large rocky refugia resulted in significantly higher survival of small crayfish in the combined particle manipulation/tethering experiment. Overall, predation appears to be a key mechanism structuring habitat-specific distribution patterns for only small O. obscurus. Large substrates may be particularly important in habitats where both small crayfish density and predation risk are high.     

Factors affecting the habitat selection of tench in a shallow eutrophic lake

The activity patterns and habitat selection of tench in a shallow eutrophic lake were determined by radio telemetry. Environmental variables, including prey availability, depth and vegetational composition were quantified in order to explain observed patterns of distribution. Tench were generally only active at night, foraging on benthic animal prey, particularly chironomid larvae. Feeding fish clearly selected for particular locations although only weak associations with depth and densities of preferred prey were found. In addition, it appears that fish spent a considerable time searching for prey and travelling relatively large distances in the process, with the result that only relatively few prey were ingested during the course of a night. During daylight, fish were almost completely inactive, resting together in favoured locations and displaying a strong association for the littoral emergent vascular plant, Typha angustifolia . This may be because Typha usually grows in relatively deep water and forms stands of relatively widely spaced stems, thus allowing such large fish to penetrate deeply into cover. Management of eutrophic waters to encourage tench should take this habitat preference into account.     

The effects of depth and salinity on juvenile Chinook salmon Oncorhynchus tshawytscha (Walbaum) habitat choice in an artificial estuary

The energetic cost for juvenile Chinook salmon Oncorhynchus tshawytscha to forage in habitats of different salinity and depth was quantified using a behavioural titration based on ideal free distribution theory. When given a choice between freshwater habitats of different depths (>0·83 or <0·83 m), a greater proportion of fish used the deeper habitat. When the deeper habitat was saltwater, the proportion of fish using it increased. When food was added to both the shallow freshwater and deep saline habitats, however, fish distribution returned to that observed when both habitats were fresh water. This indicates that the preference for deep saline habitats during the stratified phase was driven by some benefit associated with residency in deeper water, rather than salinity. The low perceived cost of low salinity might be in part due to the fish's ability to minimize this cost by only making brief forays into the alternate freshwater habitat. When the food ration delivered to the more costly, shallow habitat was 50% greater than that delivered to the less costly, deep habitat, fish distributed themselves equally between the two habitats, presumably because of equal net benefits. This study demonstrates that juvenile Chinook salmon prefer deep saline habitat to shallow freshwater habitats but will make brief forays into the freshwater habitat if food availability is sufficiently high.     

Temporal shifts in physical habitat of the crayfish,Orconectes neglectus (Faxon)

A total of 300 samples was collected from February 1985 to August 1986 in a medium order Ozark Mountain stream. Physical habitat measurements of temperature, mean water column velocity, depth, and substrate character were recorded for each of the 25 monthly samples along with length and sex of all individuals of Orconectes neglectus (Faxon). Analysis of habitat utilization and suitability (or preference) was conducted using exponential polynomial models of hydraulic stress models. There appeared to be equal preference for depth over the range measured. Both substrate and velocity preference curves were bimodal with each mode designating certain crayfish size classes. Young-of-the-year were found primarily in cobbled, high velocity areas while adults were found in low velocity, macrophyte beds. Utilization curves for laminar sublayer thichness also reflected size-dependent phenomena where young-of-the-year were found in thin sublayer areas and adults were found primarily in thick sublayers. When separated by time and size, adults were found to occupy higher velocity, cobbled habitats during at least two months. This time period corresponded with the time of egg-bearing and further analysis yielded a time-dependent habitat suitability surface which accounted for this movement pattern. We suggest that the application of these suitability surfaces, which reflect habitat changes during the annual life cycle, will produce more accurate predictions of density and will allow better habitat management decisions under various regulated flow scenarios.     

Experimental evidence for the use of density based interspecific social information in forest birds

Reproductive success and habitat preference are generally assumed to be negatively associated with densities of con- and heterospecific competitors. However, recent theoretical studies have suggested that in some cases habitat preference may have a nonlinear unimodal function in relation to con- or heterospecific competitor densities – intermediate densities being preferred. Such a pattern is expected if con- or heterospecific densities are used as a proximate cue in habitat selection, which may produce benefits by reducing searching costs and providing information about current habitat quality and costs of competition. At low density the use of such cues, and hence habitat selection, are hampered, whereas at high density costs of competition exceed the benefits of using cues, leading to avoidance. Here, we tested this hypothesis by examining whether arboreal migratory birds use the density of resident titmice ( Parus spp.) in habitat selection decisions. Many migrants and titmice species share similar resource needs making titmice density a reliable source of information for migrants. At the scale of habitat patches, we experimentally created a range of titmice densities from low to very high and subsequently measured the density response of migrants. In contrast to the unimodal habitat preference hypothesis, the average species number and total density of migratory birds were positively and linearly correlated with manipulated titmice density. Thus, migrants probably use titmice density as a relative indicator of habitat quality (abundance or quality of food) because foliage gleaners that share similar food resource with titmice, but not ground foragers, showed a positive association with manipulated titmice density. These results emphasize the positive effect of interspecific social information on habitat choice decisions and diversity of migratory bird community.     

Simple predictions of instream habitat model outputs for fish habitat guilds in large streams

1. In the context of a generalised modification of hydraulic conditions in medium to large streams, modelling the impacts of stream regulation on fish communities in multiple streams is an important challenge for basic and applied freshwater ecology. Conventional instream habitat models such as PHABSIM link a hydraulic model with preference curves for various species to estimate habitat value changes with discharge in stream reaches. Despite world‐wide applications, they have been scarcely used in multiple sites with multiple species. 2. We assigned 21 size classes of European fish species to four habitat guilds (cluster analysis grouping size classes with comparable microhabitat preference curves). Then, we ran a conventional instream habitat model on 28 French stream reaches belonging to the `barbel zone', to estimate habitat values versus discharge curves for the 21 size classes. We summarised the outputs as mean habitat values for guilds, and tested if they were predictable from average characteristics of reaches (discharge, depth, width, particle size). 3. As was obtained elsewhere for populations, habitat values for guilds were strongly related to average, dimensionless characteristics of reaches. The Reynolds number of reaches, equivalent to a discharge per width unit, reflected most of the discharge‐dependent changes in habitat values (within reaches). In particular, habitat values of species preferring bank (respectively midstream) microhabitats decreased (respectively increased) with increasing Reynolds number. The Froude number at median discharge was the major predictor of reach‐dependent but discharge‐independent variations in habitat values. Habitat values of species preferring riffle versus pool or bank microhabitats were higher in reaches with high Froude numbers. These relationships were consistent with existing knowledge on the different species. 4. Such results suggest that the input variables required to estimate habitat values for fish communities can be greatly simplified, as illustrated by a general estimation of the sensitivity of species preferring midstream habitats to discharge changes in any reach. Cost‐efficient alternatives to conventional instream habitat models should facilitate their validation in multiple sites, a point that remains critical in instream habitat modelling of fish communities.     

Habitat use of juvenile white sturgeon in the Kootenai River, Idaho and British Columbia

Ultrasonic telemetry was used to assess habitat features utilized by 36 endangered juvenile white sturgeon, Acipenser transmontanus, in the lower 120 km of the Kootenai River of Idaho, USA and British Columbia, Canada during the summer and early fall of 1999 and 2000. All 36 fish were initially captured in pools using gillnets and released there, but most of the subsequent telemetry contacts were in glides, indicating these fish moved freely between the two macro-habitats. The low electivity indices indicated little preference between glides and pools. Most contacts were in glides, in the outside bend of the river channel (50), and in or near a visually defined thalweg. Contacts were most often associated with sand substrates and no cover. Physical habitat characteristics (nose [bottom] water velocity, depth, substrate, and cover) were recorded at 168 contact locations. The combination of significantly greater velocities and depths at contact sites vs. non-contact sites (p < 0.01) indicated these fish actively found and used areas of higher velocity and greater depth within the Kootenai River. There was little cover found for fish in the river other than large sand dunes and depth. The combination of depth and nose velocity data supported the idea that large sand dunes are providing refugia in the form of velocity breaks.     

Fish habitat preferences in large streams of southern France

1. Relationships between fish and their habitat over whole geographic regions, which are evident from studies of many streams and species, can improve understanding of lotic communities and provide reliable management tools. Nevertheless, most habitat preference studies have been based on single sites, and confined to small streams and to game species.
2. Regional habitat preference models, based on local velocity, depth and roughness, were developed for twenty-four species and their size classes commonly found in large European streams. Fish surveys were conducted in six large streams in southern France over an 8-year period. To limit the influences of habitat variables other than those studied, we estimated fish preferences within each survey and averaged this information across surveys. Preferences were fitted with confidence intervals and their sensitivity to field uncertainty was evaluated.
3. Most species and size classes had significant preferences for local habitat conditions which were consistent across the region. Habitat preferences predominant in the region overall were not always observed at any one site, but habitat conditions preferred on average in the region were never actually avoided locally. These results support the use of regional preference models for fish and the development of similar models for other lotic groups whose sensitivity to local habitat conditions has been reported elsewhere.     

秦岭细鳞鲑栖息地环境特征研究

为研究秦岭细鳞鲑（Brachymystax lenok tsinlingensis）的栖息地环境选择偏好,对陕西陇县秦岭细鳞鲑国家级自然保护区和甘肃秦州珍稀水生野生动物国家级自然保护区内25个样点进行了鱼类采样和生境测量。共采集到130尾秦岭细鳞鲑样本,样点的平均分布密度为（0.10±0.07）尾/m,两个保护区内秦岭细鳞鲑的密度存在显著性差异（P < 0.05）。与秦岭细鳞鲑密度分布呈正相关的因子依次为坡度、跌水区密度、海拔、粗糙度、遮蔽度、底栖动物生物量和流速,与密度呈负相关的环境因子依次为河宽、水深和溶氧。冗余性分析（RDA）筛选了坡度、粗糙度、遮蔽度、海拔和跌水区5个关键环境因子。基于关键环境因子的实测值建立了栖息地适合度曲线,秦岭细鳞鲑分布的最适坡度范围为5%-10%,海拔分布范围为1500-2000 m,粗糙度范围0.3-0.4;跌水区密度范围12-18个/100 m,遮蔽度在0.5以上。     

Spawning habitat in the spined loach, <Emphasis Type="Italic">Cobitis taenia</Emphasis> (Cypriniformes: Cobitidae)

Spawning habitat of the endangered spined loach Cobitis taenia was studied in northwestern Germany. The distribution of eggs of the loach in the field was best correlated with the density of vegetation but had little correlation with current velocity, water depth, or bottom substrate. In the aquarium, the loach chose dense vegetation for an oviposition site, as inferred by the direct observations of spawning and the location of spawned eggs. It is concluded that such habitat specialization is an important element in the autecology of the endangered fish and a critical stage in the habitat requirements of its populations.     

Habitat utilization of juvenile lake sturgeon, Acipenser fulvescens, in a large Canadian river

An increased understanding of the juvenile life history stage of the lake sturgeon, Acipenser fulvescens , has been recognized as a key requirement for improving conservation efforts for this once abundant species. The objectives of the current study were to develop an effective methodology for capturing juvenile lake sturgeon in a large riverine environment; to describe the physical habitat characteristics (depth, water velocity and substrate) associated with the areas where juvenile lake sturgeon were captured; and to determine basic population parameters (length, body mass and condition factor) for juvenile lake sturgeon captured in those areas. Gillnets (mesh sizes 25–108 mm) were used to sample the Winnipeg River, a large river in the northern extent of the species range, from 12 June to 6 November 2006. A total of 2154 juvenile (<530 mm FL) lake sturgeon were captured, which represented over 74% of the total fish catch. Moderate (51–108 mm) and small (25 mm) mesh gill nets were found to be efficient for sampling juvenile lake sturgeon, with the former capturing a wider range of sizes and the latter capturing fewer fish but resulting in decreased mortality. Juvenile lake sturgeon were captured at high densities in discrete areas characterized by water depths >13.7 m, detectable water velocities >0.20 m s⁻¹, and various substrate types.     

Numerical quantification of the significance of aquatic vegetation affecting spatial distribution of Japanese medaka (Oryzias latipes) in an agricultural canal

Aquatic vegetation plays a very important role in providing food, shelter, and nursery habitat and is also regarded as hydraulic resistance in the stream environment. To achieve better ecological restoration, this trade-off should be solved both hydraulically and ecologically. This study quantifies the effect of aquatic vegetation on the spatial distribution of Japanese medaka (Oryzias latipes) to evaluate its importance to fish habitat preference. The preference for aquatic vegetation index is calculated using a fuzzy preference intensity model (FPIM) with interactions among water depth, current velocity and cover ratio in an agricultural canal. In this model, simplified fuzzy reasoning is introduced to explicitly take the essential vagueness of fish behavior into consideration, and a simple genetic algorithm is used to search for an optimum model representation. Uncertainties in measurement errors and dispersions of the physical environment are positively taken into the model using symmetric triangular fuzzy numbers. To overcome the difficulty in model construction with insufficient data observed in an agricultural canal, this model was conjugated with a model developed in a laboratory experiment. The model obtained was then assessed using the AIC (Akaikes Information Criterion) to evaluate the significance of vegetation index with a statistical approach. The results suggest the significance of vegetation index to habitat selection by Japanese medaka and that utilization of the AIC enables us to grasp the validity of an additional factor contributing to habitat prediction with a view to a definite scale     

Habitat selection by juvenile Atlantic salmon: the interaction between physical habitat and abundance

The effect of physical river habitat variables on the distribution of juvenile Atlantic salmon Salmo salar L. in the Rivière de la Trinité, Québec, Canada, was examined using generalized additive modelling. A survey of Atlantic salmon fry and parr densities and habitat variables (flow velocity, water column depth and substratum size) was conducted in the summer months from 1984 to 1992. Clear patterns of habitat use existed: specific ranges of habitat variables were selected, with parr preferring greater velocities, depths and substratum sizes than fry. There was a large variation, however, in juvenile densities for given velocities, depths or substratum sizes, with this variation being greatest in optimal habitats. On examination of an individual year, interaction between the variables was found to explain some of the variation. On a year‐to‐year basis the juvenile Atlantic salmon population was found to exhibit an 'Ideal Free Distribution', which resulted in greatest variation in optimal habitats with year‐to‐year changes in population abundance.     

Mass culture ofTilapia zillii [Cichlidae] in pond ecosystems

The culture ofTilapia zillii (Gervais) in 18 and 34 cm deep, 5.5×7.6 m earthen ponds at 3 initial stocking densities, 6, 9 and 12 pairs, revealed an optimum 9 pair initial density for the maximum production of fry after 104 days. However, biomass increase was significantly greater at the 6 pair stocking density and in deeper ponds. Pond depth had no significant effect on size and weight gain of parental fish. Nest and brooding tube construction was variously influenced by pond depth and stocking density. Partial shading of ponds, while not affecting the maximum water temperature, did apparently reduce fish biomass production, the average length and weight of fry, and the average depth of nests. An estimated 1 million fish could be produced in 104 days from 190 similar ponds with a water surface equivalent to 0.8 hectares. This would be equivalent to ca. 725 kg fish biomass production and would require ca. 1,900 kg of catfish pellets or their equivalent. Possible ways to increase rearing efficiency are discussed.     

Deep pools of the Danube River: ecological function or turbulent sink?

Danube main channel deep pools are in-stream habitats of high ecological relevance. We used dual-frequency identification sonar to investigate seasonal and diel fish abundance in two hydrodynamically different deep pools in the main channel of the Danube River in 2008. In general, fish of different species were present in both deep pools throughout the year, irrespective of water level. High fish abundance was recorded during autumn and winter, low abundance during spring and summer. During low discharge and low temperature and particularly during low flow velocity, low kinetic energy and low shear stress, high fish abundance in densely packed aggregations were observed, a clear indication for the refuge capacity of deep pools. In contrast, during turbulent hydraulic conditions with high flow velocity, high turbulent kinetic energy and high shear stress, low fish abundance occurred, mainly consisting of single fish, small fish shoals and benthic fish specimens. Furthermore, we could reveal that calm as well as turbulent pools fulfil the requirements as refuge and feeding habitat of eurytopic, piscivorous catfish throughout the year. The application of a multiple linear model based on the hydrological parameters discharge and water temperature as well as the hydraulic parameters flow velocity, turbulent kinetic energy and shear stress provided highly significant evidence between the observed and the expected seasonal fish abundance in the deep pools (R ² = 0.77, P < 0.001). For the first time these results make clear that the main channel deep pools are important refuge and resource habitats of different species of the Danube fish community. Deep pools are key habitats for the in-stream fish community of the Danube River.     

Physical habitat of zebra mussel (Dreissena polymorpha) in the lower Ebro River (Northeastern Spain): influence of hydraulic parameters in their distribution

Dreissena polymorpha (zebra mussel) is a freshwater bivalve mollusc and has been present for more than one decade in Spain. The zebra mussel causes serious ecological and socioeconomic impacts in areas where they settle. Our research aims to analyze its hydraulic habitat, developing physical models for this species, which indicates its preference and optimal microhabitat requirements. To get it, a survey was completed in a lotic reach in the lower Ebro River (Tarragona, Spain). Habitat suitability curves for the variables include water velocity, depth, Froude number, velocity/depth ratio, shear stress and shear stress ratio (RSS). In addition, interactive effects between hydraulic parameters on habitat selection and its use were studied and bivariate habitat models were developed. A close relationship was observed between the D. polymorpha presence and mean flow velocity combined with depth, Froude number and RSS. Suitable habitat requirements for Dreissena were detected in areas with stable river beds under high flows, and velocity below 1.2 m/s with a depth of less than 5 m under regular flows. Information about zebra mussel preferences may enhance the design of monitoring programmes and the integrated control management of this invasive mussel.     

Assessing Habitat Suitability for Juvenile Atlantic Salmon in Relation to In‐Stream Restoration and Discharge Variability

In‐stream restoration often aims at increasing the availability of the stream habitat suitable for salmonid fishes, thus creating potential for increased fish abundance. We assessed the success of in‐stream restoration of River Kiiminkijoki, northern Finland, by combining River2D habitat hydraulic modeling and fish density monitoring at the same sites, with data from multiple restored and reference reaches for 3 years both before and after restoration. We modeled the effects of restoration on the area suitable (weighted usable area, WUA) for juvenile Atlantic salmon from post‐hatching to age‐1 fish. Wetted width in the restored reaches increased by 8.1% on average compared with only ?0.2% change in the reference reaches. Habitat time series across 10 years showed significant increases in the amount of suitable habitat under summer conditions for both age‐0 and age‐1 salmon. However, improvement of overwintering habitats was marginal or nonexistent. Densities of age‐1 salmon showed no response to restoration. Low river discharge during the winter was correlated with low salmon densities the following summer. It thus appears that variability in wintertime discharge, and associated high interannual variation of WUA values, overrode the almost 20% increase in average post‐ versus pre‐restoration summertime WUA. Our study shows that the combination of hydraulic modeling and biological monitoring is a promising approach to stream restoration assessment.