Effect of treatment of soil with keratinaceous material on thermophilic fungi

Fusarium oxysporum f. sp. lycopersici and Rhizoctonal solani were grown in a complete 1.0 mM nutrient solution, and in solutions where Ca, Fe, K, Mg, N, P, and S were either excluded (0.0 mM) or included at depleted levels (0.1 mM) while all other constituents were maintained at 1.0 mM levels. Dry weight of both fungi were determined. For both fungi some of the lowest dry weights were recorded for samples grown in the complete solution. Exclusion of K, Mg, and S significantly increased dry weight of Fusarium. Inclusion at the 0.1 mM level of most components significantly increased Fusarium dry weight over values for both the complete and corresponding excluded nutrient solutions. The exception was S where there was no difference between excluded and 0.1 mM solutions. For Rhizoctonia dry weights in Fe excluded solutions were less than the complete solution, while dry weights in S excluded solutions were greater than the complete solution. At the 1.0 mM level Fe, K, and Mg dry weights were significantly increased over the dry weights produced in both the complete and deficient solutions.     

A world-wide survey of the microflora of Dactylis glomerata seed*

The fungal microflora of orchard (cock's-foot) grass seed (Dactylis glomerata L.) was determined for 140 samples obtained from thirteen countries. The microflora was assessed by visual examination of dry seed (20–50 x), by microscopic examination of centrifuged seed washings and by incubating seed on 2 % malt extract agar (MA) under a 10-day regime of diurnal cycling of temperature (23-9^oC/i8-3^oC) and near-ultraviolet radiation (12 h NUV/ 12 h dark). More than twenty-five species of potentially pathogenic fungi and forty species of saprophytes were detected. The pathogens included an Ascochyta sp., Botrytis cinerea, nine species of Drechslera including D. dactylitis (infested 23% of seed lots) and D. Useptatum (10% of seed lots), five species oiFusarium including F. avenaceum (5 % of seed lots), Lep-tosphaeria sp., Phleospora sp., Phoma sp., Phomopsis sp., Pyrenochaeta sp., Rhizoctonia sp., Rhynchophoma sp., Septoria sp. and Stagonospora sp. Many more fungi were identified from seed plated on MA and exposed to NUV than by examination of seed washings or visual examination of dry seed. Several of the fungi that were detected are known to produce mycotoxins.     

Degradation of humic acid of a forest soil by some fungal isolates

Summary In a laboratory incubation study the humic acid isolated from a forest soil of Palamau (Bihar) was subjected to biodegradation for a period of six weeks by using nine cultures of fungi. These fungi were tested earlier for their cellulose decomposing ability. The humic acid was used as sole source of carbon, nitrogen and carbon plus nitrogen in Czapek-Dox broth. Of the nine culturesAspergillus awamori (IARI),Penicillium sp. (Ranchi),Humicola insolense (Hissar) were found to be very effective in decomposing humic acid. The humic acid used as sole source of carbon was most efficiently degraded followed by that used as carbon+nitrogen source. When it was used as sole source of nitrogen, it could not be degraded so efficiently. This may be due to unavailability of its nitrogen to these microorganisms.     

Biodegradation of wood in crude oil-polluted soil

A field investigation (April–November) in Nigeria showed that biodegradation of obeche (Triplochiton scleroxylon) wood blocks was initially retarded in crude oil-contaminated soil but later became enhanced as indicated by loss of compression resistance. Further indication of this pattern was the detection of soft-rot cavities and basidiomycete fungi after 2–3 months exposure when compared to control blocks in uncontaminated soil. Laboratory tests with Pleurotus sp., Trametes sp., Gloeophyllum sp. (basidiomycetes) and Chaetomium sp. (soft-rot fungus) confirmed that degradation of crude oil-coated obeche blocks was markedly retarded without the presence of hydrocarbon-degrading bacteria. The filtrate of hydrocarbon-degrading Pseudomonas sp. grown in mineral salt/crude oil medium for 3–4 weeks supported growth of the test fungi better than in carboxymethyl cellulose medium but less than in potato dextrose broth. Similarly, wood blocks immersed in the filtrate became significantly more susceptible to fungal degradation. Pseudomonas sp. from stationary phase growth in crude oil medium depleted residual sugar in basidiomycete-degraded sawdust with a concomitant marked increase in its population. It may be concluded that readily metabolizable products of crude oil degradation by soil organisms and the removal of residual sugar which may have prevented catabolite repression of cellulases, culminated in increased attack on the wood by soil-borne wood-decomposing organisms.     

HYPHAL WALL COMPOSITION OF MINDENIELLA SPINOSPORA AND ARAIOSPORA SP.

Mechanically isolated hyphal walls of the rhipidiacean fungi Mindeniella spinospora Kanouse and Araiospora sp. (Oomycetes) were examined by biochemical, cytochemical and x-ray diffraction analyses. In both fungi, the most abundant wall constituents were 1 → 3- and 1 → 6-linked β-glucans accounting for 91% of wall dry weight in M. spinospora and 87% in Araiospora sp. In addition, hyphal walls of M. spinospora contained 1.7% mannose, 4.3% protein, 2.0% ash and 1.0% lipid. The quantities of these components in Araiospora sp. were 1.9%, 1.8%, 1.5%, and 1.3%, respectively. Both species had cellulose contents ranging from one-fifth to one-fourth of wall dry weight and chitin was apparently absent. In general, wall composition of both fungi is quite similar to that of the related species Sapromyces elongatus, lending support to the assertion that a biochemical dichotomy exists with respect to hyphal wall composition between Rhipidiaceae and Leptomitaceae, the two families comprising the order Leptomitales.     

Production of fungal antibiotics using polymeric solid supports in solid-state and liquid fermentation

The use of inert absorbent polymeric supports for cellular attachment in solid-state fungal fermentation influenced growth, morphology, and production of bioactive secondary metabolites. Two filamentous fungi exemplified the utility of this approach to facilitate the discovery of new antimicrobial compounds. Cylindrocarpon sp. LL-Cyan426 produced pyrrocidines A and B and Acremonium sp. LL-Cyan416 produced acremonidins A–E when grown on agar bearing moist polyester–cellulose paper and generated distinctly different metabolite profiles than the conventional shaken or stationary liquid fermentations. Differences were also apparent when tenfold concentrated methanol extracts from these fermentations were tested against antibiotic-susceptible and antibiotic-resistant Gram-positive bacteria, and zones of inhibition were compared. Shaken broth cultures of Acremonium sp. or Cylindrocarpon sp. showed complex HPLC patterns, lower levels of target compounds, and high levels of unwanted compounds and medium components, while agar/solid support cultures showed significantly increased yields of pyrrocidines A and B and acremonidins A–E, respectively. This method, mixed-phase fermentation (fermentation with an inert solid support bearing liquid medium), exploited the increase in surface area available for fungal growth on the supports and the tendency of some microorganisms to adhere to solid surfaces, possibly mimicking their natural growth habits. The production of dimeric anthraquinones by Penicillium sp. LL-WF159 was investigated in liquid fermentation using various inert polymeric immobilization supports composed of polypropylene, polypropylene cellulose, polyester–cellulose, or polyurethane. This culture produced rugulosin, skyrin, flavomannin, and a new bisanthracene, WF159-A, after fermentation in the presence and absence of polymeric supports for mycelial attachment. The physical nature of the different support systems influenced culture morphology and relative metabolite yields, as determined by HPLC analysis and measurement of antimicrobial activity. The application of such immobilized-cell fermentation methods under solid and liquid conditions facilitated the discovery of new antibiotic compounds, and offers new approaches to fungal fermentation for natural product discovery.     

Degradation and utilization of cellulose and straw by three different anaerobic fungi from the ovine rumen

Three different ruminal fungi, a Neocallimastix sp. (strain LM-1), a Piromonas sp. (strain SM-1), and a Sphaeromonas sp. (strain NM-1), were grown anaerobically in liquid media which contained a suspension of either 1% (wt/vol) purified cellulose or finely milled wheat straw as the source of fermentable carbon. Fungal biomass was estimated by using cell wall chitin or cellular protein in cellulose cultures and chitin in straw cultures. Both strains LM-1 and SM-1 degraded cellulose with a concomitant increase in fungal biomass. Maximum growth of both fungi occurred after incubation for 4 days, and the final yield of protein was the same for both fungi. Cellulose degradation continued after growth ceased. Strain NM-1 failed to grow in the cellulose medium. All three anaerobic fungi grew in the straw-containing medium, and loss of dry weight from the cultures indicated degradation of straw to various degrees (LM-1 greater than SM-1 greater than NM-1). The total fiber component and the cellulose component of the straw were degraded in similar proportions, but the lignin component remained undegraded by any of the fungi. Maximum growth yield on straw occurred after 4 days for strain LM-1 and after 5 days for strains SM-1 and NM-1. The calculated yield of cellular protein for strain LM-1 was twice that of both strains SM-1 and NM-1. The cellular protein yield of strain SM-1 was the same in both cellulose and straw cultures. In contrast to cellulose, straw degradation ceased after the end of the growth phase.(ABSTRACT TRUNCATED AT 250 WORDS)     

Degradation and utilization of cellulose and straw by three different anaerobic fungi from the ovine rumen.

Three different ruminal fungi, a Neocallimastix sp. (strain LM-1), a Piromonas sp. (strain SM-1), and a Sphaeromonas sp. (strain NM-1), were grown anaerobically in liquid media which contained a suspension of either 1% (wt/vol) purified cellulose or finely milled wheat straw as the source of fermentable carbon. Fungal biomass was estimated by using cell wall chitin or cellular protein in cellulose cultures and chitin in straw cultures. Both strains LM-1 and SM-1 degraded cellulose with a concomitant increase in fungal biomass. Maximum growth of both fungi occurred after incubation for 4 days, and the final yield of protein was the same for both fungi. Cellulose degradation continued after growth ceased. Strain NM-1 failed to grow in the cellulose medium. All three anaerobic fungi grew in the straw-containing medium, and loss of dry weight from the cultures indicated degradation of straw to various degrees (LM-1 greater than SM-1 greater than NM-1). The total fiber component and the cellulose component of the straw were degraded in similar proportions, but the lignin component remained undegraded by any of the fungi. Maximum growth yield on straw occurred after 4 days for strain LM-1 and after 5 days for strains SM-1 and NM-1. The calculated yield of cellular protein for strain LM-1 was twice that of both strains SM-1 and NM-1. The cellular protein yield of strain SM-1 was the same in both cellulose and straw cultures. In contrast to cellulose, straw degradation ceased after the end of the growth phase.(ABSTRACT TRUNCATED AT 250 WORDS)     

Fungal lysis by a soil bacterium fermenting cellulose

Recycling of plant biomass by a community of bacteria and fungi is fundamental to carbon flow in terrestrial ecosystems. Here we report how the plant fermenting, soil bacterium Clostridium phytofermentans enhances growth on cellulose by simultaneously lysing and consuming model fungi from soil. We investigate the mechanism of fungal lysis to show that among the dozens of different glycoside hydrolases C. phytofermentans secretes on cellulose, the most highly expressed enzymes degrade fungi rather than plant substrates. These enzymes, the GH18 Cphy1799 and Cphy1800, synergize to hydrolyse chitin, a main component of the fungal cell wall. Purified enzymes inhibit fungal growth and mutants lacking either GH18 grow normally on cellulose and other plant substrates, but have a reduced ability to hydrolyse chitinous substrates and fungal hyphae. Thus, C. phytofermentans boosts growth on cellulose by lysing fungi with its most highly expressed hydrolases, highlighting the importance of fungal interactions to the ecology of cellulolytic bacteria.     

The antibiotic effect of culture filtrates of some soil fungi on rhizobial growth in cultures

Summary Four strains ofRhizobium sp. from peanut (Arachis hypogaea L.) root nodules were tested for their sensitivity to metabolites (culture filtrates) of more than ten common soil inhabiting fungi, in yeast extract mannitol agar and broth cultures. Among the rhizobial strains tested strain CB-530, BU-1 and BU-2 were not sensitive to metabolites ofMyrothecium roridum andFusarium moniliforme whereas CB-1024 was sensitive. Culture filtrates ofGliocladium roseum, Thielavia basicola andDrechslera pedicellata inhibited the strains CB-530 and BU-2 but not CB-1024. Most of the soil inhabiting fungi tested were inhibitory to rhizobial growthin vitro and very few were stimulatory, their effect in either case being strain specific.     

Microbial mineralization of organic phosphate in soil

Summary Phosphate-dissolving microorganisms were isolated from non-rhizosphere and rhizosphere of plants. These isolates included bacteria, fungi and actinomycetes. In broth cultures, Gram-negative short rod,Bacillus andStreptomyces species were found to be more active in solubilizing phosphate thanAspergillus, Penicillium, Proteus, Serratia, Pseudomonas andMicrococcus spp. The sterile soils mixed with isolated pure culture showed slower mineralization of organic phosphate than that of non-sterile soil samples at all incubation periods. Maximum amount of phosphate mineralization by isolated microorganisms were obtained at the 60th and the 75th day of incubation in sterile and non-sterile soils respectively. The mixed cultures were most effective in mineralizing organic phosphate and individuallyBacillus sp. could be ranked next to mixed cultures. Species ofPseudomonas andMicrococcus were almost the same as that of the control under both sterile and non-sterile conditions.     

Cellobiose-oxidizing enzyme from a newly isolated cellulolytic bacterium Cytophaga sp. LX-7

Summary The cellobiose oxidizing enzyme of the newly isolated cellulolytic bacterium Cytophaga sp. LX-7 was produced extracellularly when grown on cellulose or other saccharides, which was previously noted only in fungi. The enzyme could use not only cellobiose, maltose, glucose and other saccharides but also cellulose as substrates, and use dichlorophenol indophenol and oxygen as electron acceptors.     

Isolation and characterisation of phosphate solubilising microorganisms from the cold desert habitat of <Emphasis Type="Italic">Salix alba Linn.</Emphasis> in trans Himalayan region of Himachal Pradesh

Phosphate solubilising microorganisms (PSM) (bacteria and fungi) associated with Salix alba Linn. from Lahaul and Spiti valleys of Himachal Pradesh were isolated on Pikovskaya (PVK), modified Pikovskaya (MPVK) and National Botanical Research Institute agar (NBRIP) media by spread plating. The viable colony count of P-solubilising bacteria (PSB) and fungi (PSF) was higher in rhizosphere than that of non-rhizosphere. The frequency of PSM was highest on MPVK followed by NBRIP and PVK agar. The maximum proportion of PSM out of total bacterial and fungal count was found in upper Keylong while the least in Rong Tong. The PSB frequently were Gram-positive, endosporeforming, motile rods and belonged to Bacillus sp. The PSF mainly belonged to Penicillium sp., Aspergillus fumigatus, A. niger, A. spp. and non-sporulating sterile. Amongst the isolates with high efficiency for tricalcium phosphate (TCP) solubilisation, seven bacterial and seven fungal isolates dissolved higher amount of P from North Carolina rock phosphate (NCRP) than Mussoorie rock phosphate (MRP) and Udaipur rock phosphate (URP). However, the organisms solubilised higher-P in NBRIP broth than PVK broth. SBC5 (Bacillus sp.) and SBC7 (Bacillus sp.) bacterial isolates exhibited maximun P solubilisation (40 and 33 μg ml⁻¹ respectively) whereas FC28 (Penicillium sp.) isolate (52.3 μg ml⁻¹) amongst fungi while solubilising URP. The amount of P solubilised was positively correlated with the decrease in pH of medium. SBC5 (Bacillus sp.), SBC7 (Bacillus sp.) and SBC4 (Micrococcus) decreased the pH of medium from 6.8 to 6.08 while FC28 (Penicillium sp.) and FC39 (Penicillium sp.) isolates of fungi recorded maximum decrease in pH of medium from 6.8 to 5.96 in NBRIP broth.     

Chitinolytic, Cellulolytic, and Pectinolytic Activity in vitro of Some Parasitic and Saprophytic Oomycctes

Seven lower phycomycetes, Afhanomyees astaci, A. euteiches, A. cladogamus, A. cochlioides, A. laevis. Pythium sp and Saprolegnia sp., have been investigated in respect of chitinolytic and cellulolytic activity. The five Aphanomyces species were also tested for pectinolytic activity. Different ages of stationary and shaken cultures, 2 or 3 different substrates, and 2 test pH were used for each enzyme to be tested. Chitinase and cellulase were assayed with 2 different methods. All the fungi showed chitinase activity, although in varying degree. In liquid cultures the strains of A. astaci gave the by far highest ac tivity. Differenl results were obtained with different growth media aud lest methods. Chitinase of some of the fungi was readily adsorbed on chilin. Adsorbed chitinase seemed to withstand heating more than unadsorbed enzyme. Only the three plant parasites, A. euteiches, A. cladogamus and A. codilioides, showed appreciable cellulase and pectinase activities which in some cases were stimulated by the presence in the medium of the enzyme substrate. Different assay methods and growth conditions showed difterent pattern regarding the difference in activity between the tested fungi and between used media. The conceivable roles in vivo of found activities were discussed.     

THE EFFECTS OF BACTERIA ON THE GROWTH AND REPRODUCTION OF OEDOGONIUM CARDIACUM1

Isolates of male and female Oedogonium cardiacum for which defined media had been established were subsequently found to be contaminated with a species of Corynebacterium which failed to grow in the nutrient broth used, to test for contamination. After the cultures were rendered, axenic through treatment with, penicillin G, they failed to develop oogonia or sperm except occasionally at a very low level. The addition of small amounts of the bacterium increased the development of the reproductive structures; however a much more striking increase was obtained by constantly infecting the algal cultures with Pseudomonas putida. Neither of the bacteria increased growth as measured by dry weight; however the P. putida resulted, in the growth of very long filaments in contrast to the short filaments characteristic of both the axenic cultures and those infected with Corynebacterium sp.     

Cellulase production from agricultural residues by recombinant fusant strain of a fungal endophyte of the marine sponge Latrunculia corticata for production of ethanol

Several fungal endophytes of the Egyptian marine sponge Latrunculia corticata were isolated, including strains Trichoderma sp. Merv6, Penicillium sp. Merv2 and Aspergillus sp. Merv70. These fungi exhibited high cellulase activity using different lignocellulosic substrates in solid state fermentations (SSF). By applying mutagenesis and intergeneric protoplast fusion, we have obtained a recombinant strain (Tahrir-25) that overproduced cellulases (exo-β-1,4-glucanase, endo-β-1,4-glucanase and β-1,4-glucosidase) that facilitated complete cellulolysis of agricultural residues. The process parameters for cellulase production by strain Tahrir-25 were optimized in SSF. The highest cellulase recovery from fermentation slurries was achieved with 0.2% Tween 80 as leaching agent. Enzyme production was optimized under the following conditions: initial moisture content of 60% (v/w), inoculum size of 10⁶ spores ml⁻¹, average substrate particle size of 1.0 mm, mixture of sugarcane bagasse and corncob (2:1) as the carbon source supplemented with carboxymethyl cellulose (CMC) and corn steep solids, fermentation time of 7 days, medium pH of 5.5 at 30°C. These optimized conditions yielded 450, 191, and 225 units/gram dry substrate (U gds⁻¹) of carboxylmethyl cellulase, filter-paperase (FPase), and β-glucosidase, respectively. Subsequent fermentation by the yeast, Saccharomyces cerevisiae NRC2, using lignocellulose hydrolysates obtained from the optimized cellulase process produced the highest amount of ethanol (58 g l⁻¹). This study has revealed the potential of exploiting marine fungi for cost-effective production of cellulases for second generation bioethanol processes.     

Bradyrhizobium japonicum Survival in and Soybean Inoculation with Fluid Gels

The utilization of gels, which are used for fluid drilling of seeds, as carriers of Bradyrhizobium japonicum for soybean (Glycine max (L.) Merr.) inoculation was studied. Gels of various chemical composition (magnesium silicate, potassium acrylate-acrylamide, grafted starch, and hydroxyethyl cellulose) were used, although the hydroxyethyl cellulose gels were more extensively investigated. Gel inocula were prepared by mixing gel powder with liquid cultures of B. japonicum (2% [wt/vol]). The population of B. japonicum USDA 110 did not change in each gel type during 8 days of incubation at 28°C. These fluid gels were prepared with late-exponential-growth-phase cells that were washed and suspended in physiological saline. Mid-exponential-growth-phase B. japonicum USDA 110, 123, and 138 grew in cellulose gels prepared with yeast extract-mannitol broth as well as or better than in yeast extract-mannitol broth alone for the first 10 days at 28°C. Populations in these cellulose gels after 35 days were as large as when the gels had originally been prepared, and survival occurred for at least 70 days. Soybeans grown in sand in the greenhouse had greater nodule numbers, nodule weights, and top weights with gel inoculants compared with a peat inoculant. In soil containing 10³ indigenous B. japonicum per g of soil, inoculation resulted in increased soybean nodule numbers, nodule weights, and top weights, but only nodule numbers were greater with gel than with peat inoculation. The gel-treated seeds carried 10² to 10³ more bacteria per seed (10⁷ to 10⁸) than did the peat-treated seeds.     

Direct fermentation of cellulose to ethanol by a cellulolytic filamentous fungus,Monilia sp.

Summary A saprophytic filamentous fungus, Monilia sp., isolated from bagasse compost was found to utilize many polysaccharides (including cellulose) and to produce cellulases and hemicellulases. Monilla sp. also fermented glucose, xylose and cellulosic materials to ethanol. Over 60% of the solid cellulose substrate added to Monilia sp. cultures was converted to ethanol as the major fermentation product. These results indicate that Monilia sp. is a potential organism for the direct conversion of cellulosic biomass to ethanol.     

Comparison of coal solubilization by bacteria and fungi

Coal-solubilizing agents produced byTrametes versicolor, Phanerochaete chrysosporium, Aspergillus sp., a bacterial consortium, and a bacterial isolate,Arthrobacter sp., from that consortium were compared in terms of pH dependence, thermostability, molecular mass, mechanism of action, and product diversity. The thermostability and low molecular weights exhibited by the coal-solubilizing agents indicated a non-enzymatic mechanism of action. Competition studies using cupric copper indicated that coal solubilization by these agents involved metal chelation. Results demonstrated that oxalate could account for some but not all of the coal solubilization observed forT.versicolor andP.chrysosporium. The very low levels of oxalate detected inAspergillus sp. and the bacterial cultures indicated that oxalate is not an important factor in coal solubilization by these microbes. When subjected to gel permeation chromatography, the soluble coal products generated by each microbial coal-solubilizing agent yielded unique molecular mass profiles suggesting substantial product diversity. Such diversity increases the possibility of identifying potentially valuable compounds and extending the commercial utilization of coal.Abbreviations A₄₅₀, A₂₆₀ absorbances respectively at 450 nm and 260 nm - CSA coal-solubilizing agent - CSU coal-solubilizing unit - GPC gel permeation chromatography - MEA malt extract agar - PDA potato dextrose agar - SDA Sabouraud dextrose agar - SDB Sabouraud dextrose broth - SEM standard error of the mean - Tris tris(hydroxymethyl)aminomethane - TSA trypticase soy agar - TSB trypticase soy broth     

Growth of Certain Aquatic Omycetes on Amino Acids I. Saprolegnia, Achlya, Leptolegnia, and Dictyuchus

Four fungi in the order Saprolegniales —Saprolegnia sp., Achlya ambisexualis, Leptolegnia eccentrica and Dictyuchus sterile– were tested for growth in synthetic media containing one of the following carbon sources: glucose, maltose, sucrose, alanine, proline, glutamate, leucine, arginine and phenylalanine. All of these compounds were effective substrates for one or more of the four fungi. The ability of Saprolegnia sp. to utilize other substrates was studied. Saprolegnia sp. can metabolize soluble starch, fructose, ornithine, aspartate, serine, and lysine but did not grow on galactose and eight additional amino acids.