Influence of the Hofmeister anions on protein stability as studied by thermal denaturation and chemical shift perturbation

The influence of external cosolutes on the thermal stability of the B1 domain of protein L (ProtL) has been studied by circular dichroism, fluorescence spectroscopy, and differential scanning calorimetry. The thermal denaturation midpoint is effectively modulated by the addition of a suite of anions and follows the Hofmeister series. The maximum increase in thermostability (corresponding to 14 degrees C) was observed in the presence of 1 M sodium sulfate. After conversion of the experimental data into the change in the virial coefficient, a mechanistic model was used to estimate the relative contributions from excluded volume and preferential anion solvation for each anion. As expected, the excluded volume term stabilizes the native conformation of ProtL for all the cosolutes, but opposite effects on protein stability arise from the anion's solvation depending on their tendency to interact with or to become excluded from the protein surface. This behavior is in agreement with the results of independent NMR experiments: the anions that strongly interact with the protein surface produce significant perturbations in the amide protein chemical shift (delta d23(HN)). A correlation obtained between delta d23(HN) and the temperature coefficients for the different amide protons provides qualitative information about the structural determinants for the interaction between the protein surface and the cosolute.     

Solubility of lysozyme in polyethylene glycol-electrolyte mixtures: the depletion interaction and ion-specific effects

The solubility of aqueous solutions of lysozyme in the presence of polyethylene glycol and various alkaline salts was studied experimentally. The protein-electrolyte mixture was titrated with polyethylene glycol, and when precipitation of the protein occurred, a strong increase of the absorbance at 340 nm was observed. The solubility data were obtained as a function of experimental variables such as protein and electrolyte concentrations, electrolyte type, degree of polymerization of polyethylene glycol, and pH of the solution; the last defines the net charge of the lysozyme. The results indicate that the solubility of lysozyme decreases with the addition of polyethylene glycol; the solubility is lower for a polyethylene glycol with a higher degree of polymerization. Further, the logarithm of the protein solubility is a linear function of the polyethylene glycol concentration. The process is reversible and the protein remains in its native form. An increase of the electrolyte (NaCl) concentration decreases the solubility of lysozyme in the presence and absence of polyethylene glycol. The effect can be explained by the screening of the charged amino residues of the protein. The solubility experiments were performed at two different pH values (pH = 4.0 and 6.0), where the lysozyme net charge was +11 and +8, respectively. Ion-specific effects were systematically investigated. Anions such as Br⁻, Cl⁻, F⁻, and (all in combination with Na⁺), when acting as counterions to a protein with positive net charge, exhibit a strong effect on the lysozyme solubility. The differences in protein solubility for chloride solutions with different cations Cs⁺, K⁺, and Na⁺ (coions) were much smaller. The results at pH = 4.0 show that anions decrease the lysozyme solubility in the order (the inverse Hofmeister series), whereas cations follow the direct Hofmeister series (Cs⁺ < K⁺ < Na⁺) in this situation.     

The sulfate ligand as a promising “player” in 3d-metal cluster chemistry

The potentiality of the sulfate ligand in the chemistry of polynuclear 3d-metal complexes (clusters) is illustrated through few, representative examples from our own research. A systematic search from the Cambridge Crystallographic Data Base reveals that the ligand can adopt 16 different bridging coordination modes, being capable of linking 2, 3, 4, 5, 6, 8 or even 10 metal ions. Despite its tremendous structural flexibility, the use of the ligand in synthetic 3d-metal cluster chemistry has been largely neglected. This report shows that the sulfate ions, in combination with anions of di-2-pyridyl ketone or various 2-pyridyl oximes are versatile ligand “blends” for the synthesis of interesting Ni(II) and Zn(II) clusters with interesting structures and properties. A prognosis for the future is attempted.     

Luminescent metalloreceptors with pendant macrocyclic ionophore: Synthesis, characterization, electrochemistry and ion-binding study

Metalloreceptors containing ruthenium(II) bipyridine unit as fluorophore and pendant macrocyclic units as ionophore have been synthesized and their luminescence and electrochemical properties have been investigated. Ion-binding study of these fluoroionophore with the anions F⁻, Cl⁻, Br⁻, I⁻, , , , , CH₃COO⁻, and and cations Na⁺, K⁺, Mg²⁺, Ca²⁺, Zn²⁺, Ba²⁺, Sr²⁺ Cd²⁺, Hg²⁺, Pb²⁺ and Cu²⁺, monitored by luminescence and ¹H NMR spectral changes, reveal strong interactions of and F⁻ for 2 and 3 and of Cu²⁺ only for 3. Luminescence titrations for 2 and 3 have been carried out to determine binding constants (K_s), and the calculated values are in the range 2.85 × 10² to 4.48 × 10⁴ M⁻¹. The ¹H NMR spectral changes for 2 and 3 with the addition of increasing concentration of F⁻ and exhibit substantial low-field shift of the CONH proton indicating its involvement in complex formation with the anions. The adduct of 2 and 3 have been isolated and characterized by ¹H and ³¹P NMR, mass and IR spectroscopy. The results are discussed in light of selectivity, structures of the anion bound complexes and their luminescence property.     

Dinuclear and polynuclear Cu(II) azido-bridged compounds with 7-azaindole as a ligand. Synthesis, characterization and 3D structures

In this study three new dinuclear Cu(II) compounds with the ligand 7-azaindole (abbreviated as Haza) and bridging end-on azide anions with the general formula [Cu₂(Haza)₄(N₃)₂(A)₂] (in which A =  (1), (2) and (3)) are reported, as well as a dinuclear-based polymeric compound with the overall formula [Cu₄(L)₆(N₃)₆(ClO₄)₂]_n·(CH₃OH)_2n (4). The latter compound contains both end-on and end-to-end azide anions. Full characterization of all four compounds has been performed by spectroscopic methods and by using 3D X-ray structure analysis.     

Excited state properties of Tl2B12H12. Metal-centered photoluminescence

The compound Tl₂B₁₂H₁₂ which consists of icosahedral anions and Tl⁺ cations shows a metal-centered r.t. luminescence at λ_max = 530 nm which originates from the lowest-energy sp triplet of Tl⁺. This emission indicates a considerable covalent interaction between Tl⁺ and which is based on the hydridic nature of the boron cluster.     

Thermal stability of lysozyme as a function of ion concentration: A reappraisal of the relationship between the Hofmeister series and protein stability

Anion and cation effects on the structural stability of lysozyme were investigated using differential scanning calorimetry. At low concentrations (<5 mM) anions and cations alter the stability of lysozyme but they do not follow the Hofmeister (or inverse Hofmeister) series. At higher concentrations protein stabilization follows the well‐established Hofmeister series. Our hypothesis is that there are three mechanisms at work. At low concentrations the anions interact with charged side chains where the presence of the ion can alter the structural stability of the protein. At higher concentrations the low charge density anions perchlorate and iodide interact weakly with the protein. Their presence however reduces the Gibbs free energy required to hydrate the core of the protein that is exposed during unfolding therefore destabilizing the structure. At higher concentrations the high charge density anions phosphate and sulfate compete for water with the protein as it unfolds increasing the Gibbs free energy required to hydrate the newly exposed core of the protein therefore stabilizing the structure.     

Anions induced structural variety of macrocycles containing imidazolium cations

Six compounds including macrocyclic imidazolium cations ([H₂L^I]²⁺, [H₂L^II]²⁺ or [H₂L^III]²⁺) and anions such as Cl⁻, SCN⁻ and have been synthesized and characterized, in which different anions were introduced to the macrocyclic skeleton and the interactions of anions with the macrocycle have been investigated. Single-crystal X-ray analyses indicated that the macrocyclic configuration changed from a boat-like configuration to a chair-like configuration with the geometric variety of anions from spherical (Cl⁻) to linear (SCN⁻) or trigonal planner . Meanwhile, hydrogen bonding interactions between the macrocycle and anions were also studied.     

Extracting intramural wavefront orientation from optical upstroke shapes in whole hearts

Information about intramural propagation of electrical excitation is crucial to understanding arrhythmia mechanisms in thick ventricular muscle. There is currently a controversy over whether it is possible to extract such information from the shape of the upstroke in optical mapping recordings. We show that even in the complex geometry of a whole guinea pig heart, optical upstroke morphology reveals the 3D wavefront orientation near the surface. To characterize the upstroke morphology, we use , the fractional level at which voltage-sensitive fluorescence, V_F, has maximal time derivative. Low values of indicate a wavefront moving away from the surface, high values of a wavefront moving toward the surface, and intermediate values of a wavefront moving parallel to the surface. We further performed computer simulations using Luo-Rudy II electrophysiology and a simplified 3D geometry. The simulated maps for free wall and apical stimulations as well as for sinus rhythm are in good quantitative agreement with the averaged experimental results. Furthermore, computer simulations show that the effect of the curvature of the heart on wave propagation is negligible.     

Applicability of new spin trap agent, 2-diphenylphosphinoyl-2-methyl-3,4-dihydro-2H-pyrrole N-oxide, in biological system

Electron spin resonance using spin-trapping is a useful technique for detecting direct reactive oxygen species, such as superoxide (). However, the widely used spin trap 2,2-dimethyl-3,4-dihydro-2H-pyrrole N-oxide (DMPO) has several fundamental limitations in terms of half-life and stability. Recently, the new spin trap 2-diphenylphosphinoyl-2-methyl-3,4-dihydro-2H-pyrrole N-oxide (DPhPMPO) was developed by us. We evaluated the biological applicability of DPhPMPO to analyze in both cell-free and cellular systems. DPhPMPO had a larger rate constant for and formed more stable spin adducts for than DMPO in the xanthine/xanthine oxidase (X/XO) system. In the phorbol myristate acetate-activated neutrophil system, the detection potential of DPhPMPO for was significantly higher than that of DMPO (k_DMPO = 13.95 M⁻¹ s⁻¹, k_DPhPMPO = 42.4 M⁻¹ s⁻¹). These results indicated that DPhPMPO is a potentially good candidate for trapping in a biological system.     

In situ alkylation of 4,4′-bipyridine in hydrothermal synthesis of one-dimensional copper(I) bromide compounds

Hydrothermal reaction of CuBr₂, 4,4′-bipyridine and ethanol/methanol generated two copper (I) bromide complexes with in situ alkylated 4,4′-bipyridium, namely [C₁₄H₁₈N₂][Cu₅Br₇] (1) and [C₁₂H₁₄N₂][Cu₄Br₆] (2). The structure of 1 consists of chains and N,N′-diethyl-4,4′-bipyridinium. The underlying structural motif in of 1 is the Cu₅Br capped square pyramid, which is different from the Cu₅Br₂ pentagonal bipyramidal structural motif in various documented anions. The in 1 contains untypical μ₅-bromide, with which five copper atoms forms a capped square pyramid rather than a pentagonal pyramid as predicted by Subramanian and Hoffmann. Compound 2 is isostructural with [C₁₂H₁₄N₂][Cu₄Cl₆] reported by Willett, and consists of chains and N,N′-dimethyl-4,4′-bipyridinium. The chain is composed of alternating Cu₆Br₆ and Cu₂Br₆ units.     

On the application of statistical physics to evolutionary biology

There is a close analogy between statistical thermodynamics and the evolution of allele frequencies under mutation, selection and random drift. Wright's formula for the stationary distribution of allele frequencies is analogous to the Boltzmann distribution in statistical physics. Population size, 2N, plays the role of the inverse temperature, 1/kT, and determines the magnitude of random fluctuations. Log mean fitness, , tends to increase under selection, and is analogous to a (negative) energy; a potential function, U, increases under mutation in a similar way. An entropy, S_H, can be defined which measures the deviation from the distribution of allele frequencies expected under random drift alone; the sum gives a free fitness that increases as the population evolves towards its stationary distribution. Usually, we observe the distribution of a few quantitative traits that depend on the frequencies of very many alleles. The mean and variance of such traits are analogous to observable quantities in statistical thermodynamics. Thus, we can define an entropy, S_Ω, which measures the volume of allele frequency space that is consistent with the observed trait distribution. The stationary distribution of the traits is ; this applies with arbitrary epistasis and dominance. The entropies S_Ω, S_H are distinct, but converge when there are so many alleles that traits fluctuate close to their expectations. Populations tend to evolve towards states that can be realised in many ways (i.e., large S_Ω), which may lead to a substantial drop below the adaptive peak; we illustrate this point with a simple model of genetic redundancy. This analogy with statistical thermodynamics brings together previous ideas in a general framework, and justifies a maximum entropy approximation to the dynamics of quantitative traits.     

Ruthenium(II) complexes possessing the η-p-cymene ligand

Complexes possessing a soft donor η⁶-arene and hard donor acetylacetonate ligand, [(η⁶-p-cymene)Ru(κ²-O,O-acac-μ-CH)]₂[OTf]₂ (1) (OTf = trifluoromethanesulfonate; acac = acetylacetonate) and {Ar′ = 3,5-(CF₃)-C₆H₃}, were prepared and fully characterized. The lability of the μ-CH linkage for complex 1 and the THF ligand of 2 allow access to the unsaturated cation [(η⁶-p-cymene)Ru(κ²-O,O-acac)]⁺. The reaction of with KTp {Tp = hydridotris(pyrazolyl)borate} produces . The azide complex forms upon reaction of with N₃Ar (Ar = p-tolyl), and reaction of with CHCl₃ at 100 °C yields the chloride-bridged binuclear complex . The details of solid-state structures of [(η⁶-p-cymene)Ru(κ²-O,O-acac-μ-CH)]₂[OTf]₂ (1), and are disclosed.     

Synthesis, structure and magnetic characterization of decamethylmetallocenium ethyl tricyanoethylenecarboxylate charge-transfer salts

Ethyl tricyanoethylenecarboxylate (ETCE) is a one-electron acceptor related to tetracyanoethylene that can serve as a building block for the construction of molecule-based magnets. The reactions of ETCE with decamethylmetallocenes, (M = Cr, Mn, Fe) give three new charge-transfer salt magnets, [ETCE] 1, [ETCE] 2 and [ETCE] 3. The expected mixed pi stacking of anions and cations is obtained, with the ETCE radical anion exhibiting typical disorder over two nearly equivalent footprints. Powder diffraction supports the belief that all three compounds are isomorphous. Magnetic measurements indicate that 1 is a soft ferromagnet, ordering below a critical temperature, T_c, of 3.8 K. Compound 2 exhibits complex magnetic behavior consisting of two frequency-dependent peaks in the ac susceptibility, the first at about 11.2 K and the second at about 7 K. At 1.8 K, the compound is hysteretic and exhibits a coercive field of 10 kG. Compound 3 is a glassy, apparently canted, ferromagnet displaying an out-of-phase ac susceptibility signal below about 3 K.     

The new helical zigzag chain {[Ag(Pepy)(NO3)]}∞ and mononuclear [HPepy(FeCl4)] with 3D network based on hydrogen bonds as well as π-π interactions

The title complexes, {[Ag(Pepy)(NO₃)]}_∞ (1) and [HPepy(FeCl₄)] (2) (Pepy = trans-2-(2-phenylethyleneyl)pyridine), had been synthesized and characterized structurally by single-crystal X-ray diffraction analysis, FTIR as well as thermal analysis. The geometrical structure of complex 1 is a one-dimensional helical zigzag chain. Each Ag^I center is five-coordinated by two anions and one Pepy ligand while the anion is an uncommon tetra-dentate coordinating to two Ag^I by O atoms, respectively. The anions connecting with Ag^I as bridge blocks resulted in the formation of crystalline of helical polymeric chain. In the mononuclear complex 2, the Fe^III center is four-coordinated by four Cl⁻ as [FeCl₄]⁻ anion, which connected with hydrogen atoms from the protonated N atom and the C atoms from HPepy⁺ to form multivalent hydrogen bonded network through N-H?Cl and C-H?Cl interactions. The two frameworks can be both considered as a 3D structure driven by diverse hydrogen bonds as well as π-π stacking interactions.