蛋白质溶液NMR结构测定的一些新进展

新的标记技术的进展和采用稀释的液晶作为溶剂以提供额外的结构信息,提高了核磁共振技术测定蛋白质溶液三维结构的精度,扩大了分子质量测定范围.目前已经利用多维 ¹⁵N,¹³C,²H标记NMR测定了许多分子质量为30 ku左右的蛋白质溶液结构,这一上限可能还会被进一步提高.     

核磁共振技术在蛋白质领域的应用

简要叙述了核磁共振技术(NMR)在蛋白质领域的研究及应用。NMR法通过测定蛋白质在稀溶液状态下反应位点的特定参数来计算蛋白质的三级结构,并可深入了解一定时间范围内化学反应和蛋白质构象转变的动力学过程。通过NMR对抗原决定簇和抗体CDR作图,可以分析其一级结构和三维构象;对抗原抗体动力学的分析,对于设计基因疫苗、检测细胞表面抗原提呈以及分析抗原抗体复合物的构象变化也有着重要意义。     

结构基因组学研究与核磁共振

各种生物的基因组DNA测序计划的完成,将结构生物学带入了结构基因组学时代.结构基因组学是对所有基因组产物结构的系统性测定,它运用高通量的选择、表达、纯化以及结构测定和计算分析手段,为基因组的每个蛋白质产物提供实验测定的结构或较好的理论模型,这将加速生命科学各个领域的研究.生物信息学、基因工程、结构测定技术等的发展为结构基因组学研究提供了保证.近年来核磁共振在技术方法上的进展,使其成为结构基因组学高通量结构分析中的一个关键方法.     

核磁共振波谱法在肺炎球菌荚膜多糖检定中的应用

目的 建立1 H-NMR波谱法检定23价肺炎球菌荚膜多糖结构的方法.方法 用1H-NMR方法分析肺炎球菌荚膜多糖,选择(5.89～4.64) ppm区作为‘指纹’鉴定区,以默克公司公布的肺炎球菌荚膜多糖波谱为参照谱图,将检定样品的波谱与其相比较.对1 H-NMR波谱进行专属性和耐用性验证.结果 实验中应用1H-NMR波谱分析法对23价肺炎球菌多糖疫苗包含的所有血清型多糖的检定结果与默克公司公布的结果完全一致,该方法有很好的专属性和耐用性.结论 实验中建立的1H-NMR波谱法适用于肺炎球菌荚膜多糖的检定,与传统方法相比,该方法有检测速度快,样品易于准备的优点等.     

二维核磁共振谱在多糖结构研究中的应用

二维核磁共振谱（2D NMR）是获取多糖结构信息,尤其是在多糖序列分析方面的有力工具。本文重点介绍了在多糖结构解析中常用的几种2D NMR谱以及2D NMR解析多糖结构的方法。     

神经网络在蛋白质二级结构预测中的应用

介绍了蛋白质二级结构预测的研究意义,讨论了用在蛋白质二级结构预测方面的神经网络设计问题,并且较详尽地评述了近些年来用神经网络方法在蛋白质二级结构预测中的主要工作进展情况,展望了蛋白质结构预测的前景。     

遗传算法在蛋白质结构预测中的应用

遗传算法(geneticalgorithm,GA)作为一种自适应启发式概率性迭代式全局搜索算法,具有不依赖于问题模型的特性、全局最优性、隐含并行性、高效性、解决不同非线性问题的鲁棒性特点,目前已经广泛应用于自动控制、机器人学、计算机科学、模式识别、模糊人工神经和工程优化等设计领域。本文首先介绍了GA的基本原理,即搜索的基本过程;随后总结了GA与传统算法相比所具有的优点;第三部分则分别综述了GA在蛋白质结构预测中主要使用的模型、设计和执行策略,以及使用GA与其他算法相互结合预测蛋白质结构的研究进展;最后提出了作者对GA研究中存在问题的认识和研究展望。     

核磁共振技术及其在生命科学中的应用

核磁共振（NMR）是一种不破坏样品的无损伤分析技术,是分子结构分析不可或缺的手段。随着新技术、新方法的不断发展,其研究领域和应用范围已扩展到了几乎所有的自然科学领域。本文简要介绍了核磁共振波谱技术的基本原理、多维NMR以及在结构鉴定、构象分析、医学临床检测、蛋白质组学、代谢组学等方面的应用。同时,本文还就№技术的发展前景提出了一些看法。     

P53蛋白质N末端的二级结构预测及其三维构象

以编码Ｐ５３Ｎ末端１２０个残基的ｍＲＮＡ二级结构为基础,结合Ｃｈｏｕ－Ｆａｓｍａｎ蛋白质二级结构预测原则,预测出Ｐ５３蛋白质Ｎ端的９３个残基包含四段α螺旋结构（１４－２６;３８－４６;５１－５６;６８－７０）,没有发现β片层。与四种以多重序列联配为基础的蛋白质二级结构预测方法（准确率均为７３．２０％左右）相对照,结果十分相近。在ＳＧＩ工作站上以此为初始结构建立的三维构象提示,Ｐ５３Ｎ末端前８０个氨基酸肽段呈弧型板块结构,其转录激活区由两段主要螺旋组成,呈上下构形,占据弧型板块的顶部及底部外侧缘。Ｃ端１３个富含脯氨酸肽段则呈弯曲松散状。这些构象与Ｐ５３Ｎ末端的生物功能是相吻合的     

钙调素的结构生物学研究进展

介绍了Apo-CaM、Ca²⁺-CaM以及CaM与其靶肽及拮抗剂复合体的空间结构.钙调素(calmodulin, CaM)作为细胞多功能的Ca²⁺受体,在细胞信号转导过程中发挥重要作用.近几年对它的空间结构有了较清楚的了解,使人们能够更明确地认识CaM的Ca²⁺激活及CaM与其靶酶的作用机制.     

Detection of Mobile Proteins by Proton Nuclear Magnetic Resonance Spectroscopy in the Guinea Pig Brain Ex Vivo and Their Partial Purification

Abstract: Proton nuclear magnetic resonance (¹H NMR) spectroscopy was used to study metabolites of the brain cortex ex vivo. The superfused brain cortex preparation was judged to be metabolically viable on the basis of the ³¹P NMR spectrum (intracellular pH of 7.23 ± 0.03 and phosphocreatine/ ATP ratio of 1.21 ± 0.09). Using'H NMR a group of previously unidentified signals was detectable at 0.94, 1.22, and 1.40 ppm with a water-suppressed spin-echo sequence. These signals had shorter spin-spin relaxation times (51-54 ms) than TV-acetylaspartate and lactate (84-93 ms) and also smaller saturation factors, an indication of shorter spin-lattice relaxation times than the latter two low-molecular-weight metabolites. The unidentified signals also displayed homo-nuclear coupling to other spins in the methine region of the spectrum. Acid extraction of the brain slices or cortex from animals that were killed yielded a mixture of proteins that exhibited NMR properties matching the ¹H NMR signals in the brain cortex. The molecular mass of these thermoresistant, "mobile' proteins, which contained proline plus hydroxy-proline (9-16% of all amino acids), ranged between 8 and 40 kDa. These "new' assigμMents of¹H NMR-detectable compounds may influence interpretation of NMR data of some metabolites, as their signals are in the vicinity of the -CH3 ¹H NMR peaks of lactate and alanine.     

Conformations of P2 Protein of Peripheral Nerve Myelin by Nuclear Magnetic Resonance Spectroscopy

High-resolution 1H NMR spectra of P2 protein from bovine peripheral nerve myelin indicate that the protein contains a high degree of tertiary structure in aqueous solution. Denaturation of the protein in urea solutions is a multi-step process. Binding of lysophosphatidylcholine micelles to the protein causes a conformational change and a broadening of NMR peaks from side chains of aromatic amino acid and methionine residues, with much less effect on upfield methyl resonances.     

High-Resolution Proton Magnetic Resonance Spectroscopy of Rabbit Brain: Regional Metabolite Levels and Postmortem Changes

The changes in 16 cerebral metabolites produced by cardiac arrest and subsequent room temperature autolysis were studied using high-resolution proton nuclear magnetic resonance spectroscopy. Biopsies of rabbit cerebral cortex, cerebral white matter, and cerebellum were quantitatively analyzed for acetate, alanine, gamma-aminobutyric acid, creatine, glutamate, glycine, inositol, lactate, N-acetylaspartate, phosphocreatine, succinate, taurine, and threonine. Of these, N-acetylaspartate and the total creatine pool are the best candidates for use as concentration reference standards linking in vitro to in vivo 1H nuclear magnetic resonance measurements. Both changed little immediately after death, and they varied in a distinctive way among cortex, white matter, and cerebellum.     

基于低场核磁共振T1-T2谱技术定性和定量分析罗非鱼各组织的方法探究

形体指标的检测是鱼类常规营养评定的重要组成部分。目前,分析鱼类组织体重比的方法会对鱼体造成损伤,且取样过程复杂,迫切需要无损快速检测技术分析鱼体组织占比。低场核磁共振技术具有快速无损检测的特点,已有研究利用低场核磁共振T1谱技术检测小鼠内脂肪组织体积,但尚未有研究应用低场核磁共振T1-T2谱技术对鱼类各组织器官进行定性和定量分析。基于此,利用低场核磁共振T1-T2谱技术,将分离后的罗非鱼的肌肉组织、腹腔脂肪组织、肝脏组织、肠道组织单独以及混合后进行扫描分析,结果发现利用低场核磁共振T1-T2谱技术可以分离罗非鱼肌肉组织和腹腔脂肪组织,但是无法区分肝脏组织和肠道组织。进一步对能够实现分离的肌肉组织和脂肪组织建立定量分析的模型,分析罗非鱼组织信号强度与组织重量相关性,结果显示,肌肉组织相关性R2=0.974 3,腹腔脂肪组织相关性R2=0965 0。并利用罗非鱼活体验证了肌肉组织定量分析模型的可靠性,将活体扫描肌肉信号大小转换成肌肉组织重量并分析其与全鱼体重相关性,结果显示肌肉组织重量与体重相关性R2=0.806 9。研究表明,在鱼类营养代谢研究中,可以利用低场核磁共振T1-T2谱技术快速无损地定量分析鱼体内肌肉组织含量。     

Proton Nuclear Magnetic Resonance Spectroscopy of Primary Cells Derived from Nervous Tissue

Abstract: Cell culture techniques, high-resolution in vitro ¹H nuclear magnetic resonance (NMR) spectroscopy, and chromatographic analyses were used to compare the properties of purified cell populations derived from the PNS and cortical neurones. Cell cultures were immunocytochemically characterised with specific antibodies to ensure purity of the individual cultures. Spectra of perchloric acid extracts of cultured Schwann cells, perineural fibroblasts, dorsal root ganglion neurones, and cortical neurones displayed several common features. However, statistically significant differences were found by ¹H NMR spectroscopy in most metabolites among the cell types studied. In addition, cells could be distinguished by the presence or absence of certain amino acids. For example, N -acetylaspartate was present in dorsal root ganglion neurones and cortical neurones, γ-aminobutyric acid was present in large amounts in cortical neurones, and Schwann cell spectra displayed a large signal from glycine. These results extend our earlier findings that different cell types of the CNS exhibit highly characteristic metabolite profiles to now include the major cell types of the PNS. These latter cell types also exhibit characteristic metabolite compositions, such that even Schwann cells and oligodendrocyte type 2 astrocyte (O-2A) progenitor cells—precursors of the myelinating cells of the CNS and PNS, respectively—can be readily distinguished from each other.