Environmental predictors of global parrot (Aves: Psittaciformes) species richness and phylogenetic diversity

Aim Spatial patterns of phylogenetic diversity (PD) aid our ability to discern diversification rate mechanisms underlying hypotheses for the large‐scale distribution of biodiversity. We develop a predictive framework for the way in which spatial patterns of PD vary with those of species richness, depending on the balance between speciation and extinction rates. Within this framework, diversification processes thought to underlie the productive energy, ambient energy, topographic variability and habitat variety hypotheses predict that gradients of increase in species richness will be associated with: (1) decreasing extinction rates where driven by productive energy, hence increasing relative PD (i.e. PD controlling for species richness, or PD_rel); (2) a similar positive relationship between ambient energy and PD_rel; (3) increasing speciation rates where driven by topographic variability, hence decreasing PD_rel; and (4) no consistent relationship between PD_rel and habitat variety when driven by the latter. We test these predictions using distributional data on parrots. Location Neotropical, Afrotropical, Indo‐Malayan and Australasian realms. Methods Spatial models were used to test the predictions. Results Globally, a positive association between productive energy and PD_rel confirms prediction (1). However, within realms, hump‐shaped relationships suggest the importance of decreasing extinction rates up to a threshold level of productive energy, and the increasing importance of speciation rates thereafter. Ambient energy is positively associated with PD_rel in Australasia, Indo‐Malaya, and globally, supporting prediction (2). However, this is driven by the coincidence of highest PD_rel in areas of high ambient energy and intermediate productive energy (i.e. in seasonal tropical environments), which may be characterized by relatively low speciation and extinction rates. In the Neotropics, increasing topographic variability is associated with decreasing PD_rel and increasing species richness, suggesting an increasing gradient of speciation, supporting prediction (3). Elsewhere, the signal of this mechanism may be obscured by collinearities with energy gradients. The lack of an overall relationship between habitat diversity and PD_rel confirms prediction (4). Main conclusions Spatial patterns of PD_rel in relation to environmental gradients may be sensitive to collinearities among those gradients. Nevertheless, patterns emerge which have implications for the relative importance of speciation and extinction processes in generating latitudinal diversity gradients.     

How global extinctions impact regional biodiversity in mammals

Phylogenetic diversity (PD) represents the evolutionary history of a species assemblage and is a valuable measure of biodiversity because it captures not only species richness but potentially also genetic and functional diversity. Preserving PD could be critical for maintaining the functional integrity of the world's ecosystems, and species extinction will have a large impact on ecosystems in areas where the ecosystem cost per species extinction is high. Here, we show that impacts from global extinctions are linked to spatial location. Using a phylogeny of all mammals, we compare regional losses of PD against a model of random extinction. At regional scales, losses differ dramatically: several biodiversity hotspots in southern Asia and Amazonia will lose an unexpectedly large proportion of PD. Global analyses may therefore underestimate the impacts of extinction on ecosystem processes and function because they occur at finer spatial scales within the context of natural biogeography.     

Traits,trees and taxa: global dimensions of biodiversity in mammals

Measures of biodiversity encompass variation along several dimensions such as species richness (SR), phylogenetic diversity (PD) and functional/trait diversity (TD). At the global scale, it is widely recognized that SR and PD are strongly correlated, but the extent to which either tends to capture variation in TD is unclear. Here, we assess relationships among PD, SR and TD for a number of traits both across clades and regional assemblages of mammals. We also contrast results using two different measures of TD, trait variance and a new measure we refer to as trait bin filling (the number of orders of magnitude of variation that contain at least one species). When TD is defined as trait variance, PD is a much stronger correlate of TD than SR across clades, consistent with hypotheses about the conservation value of PD. However, when TD is defined as bin filling, PD and SR show similar correlations with TD across clades and space. We also investigate potential losses of SR, PD and TD if species that are currently threatened were to go extinct, and find that threatened PD is often a similar predictor of threatened TD as SR.     

Processes involved in species saturation of ground‐dwelling ant communities (Hymenoptera,Formicidae)

The species saturation hypothesis in ground‐dwelling ant communities was tested, the relationship between local and regional species richness was studied and the possible processes involved in this relationship were evaluated in the present paper. To describe the relationship between local and regional species richness, the ground‐dwelling ant fauna of 10 forest remnants was sampled, using 10 1 m² quadrats in each remnant. The ants were extracted from the litter by using Winkler sacs. Using regression analyses, an asymptotic pattern between local and regional species richness was detected. This saturated pattern may be related to three processes: (i) high interspecific competition; (ii) habitat species specialization; or (iii) stochastic equilibrium. It is concluded that non‐interactive processes, such as stochastic equilibrium and habitat specialization may act as factors regulating species richness in this community. The predominance of locally restricted species, in all sampled remnants, seems to indicate the occurrence of a high degree of habitat specialization by the ant species. This result is evidence for the hypothesis that community saturation has been generated by non‐interactive processes. Although ants are frequently described as highly interactive, it is possible that interspecific competition is not important in the structuring of ground‐dwelling ant communities.     

The biogeography of lower Mesoamerican freshwater fishes

Aim This paper examines the importance of regional processes in determining the patterns of distribution and diversity of lower Mesoamerican freshwater fishes. Location We focused our analyses on the lower Mesoamerican region, which we define to include all the rivers of Panama and Costa Rica. The geographic boundaries are the Colombian Choco to the south and Lake Nicaragua to the north. Methods We described the biogeographical provinces of lower Mesoamerica (LMA) using presence/absence data of primary and secondary LMA freshwater fishes. We conducted subsequent analyses at the spatial resolution of the biogeographical provinces and described patterns of community composition, species richness, endemism, range size, and the permeability of dispersal barriers between biogeographical provinces. Results This study represents the first attempt since that of W. A. Bussing in 1976 to investigate the biogeographical regions of Mesoamerica, and our analyses demonstrate increased regional complexity in biodiversity patterns relative to previous studies. Changes in community composition across LMA clearly highlight the importance of both extrinsic geological processes and intrinsic biological differences among freshwater fish species in shaping the dispersal and diversification histories of the LMA freshwater fish fauna. The influence of biology and geology is also exemplified by patterns of endemism and turnover between biogeographical provinces, which suggests that the relative importance of regional speciation and dispersal varies spatially across the LMA landscape. Finally, it would seem to follow that secondary freshwater fishes will have larger range sizes than primary fishes as a result of the increased salinity tolerance posited for the former group, and thus the increased probability of dispersal along coastlines. We did not, however, find a significant difference between the average range size of primary and secondary freshwater fishes, indicating that the putative differences in physiological tolerance to seawater between the two groups are not reflected in their distribution patterns at the scale of LMA. The geometric distribution of range size of LMA freshwater fishes suggests that dispersal of both primary and secondary freshwater fishes along coastlines must be infrequent. Main conclusion The observation that regional processes exerted a strong influence on the assembly and maintenance of LMA freshwater fish communities has important consequences for both theory and conservation. We suggest that large‐scale biogeographical analyses are required to illuminate the backdrop upon which local interactions play themselves out, supporting a top‐down approach to the study of biological diversity. Our results also identify areas of high conservation priority, providing a baseline for informing conservation strategies for freshwater fishes in LMA. We conclude by calling for conservation planning and action that acknowledges the importance that regional processes play in determining patterns of organismal diversity, and that incorporates these processes in strategies to conserve remnant biological diversity.     

Species richness patterns of amphibians in southwestern Ontario ponds

Abstract. In southwestern Ontario amphibian species richness (α-diversity) was investigated at 180 ponds from 1992 to 1994. Patterns of species richness were compared among regions and the relationship between species richness and local habitat and regional landscape variables was investigated. Patterns of incidence differed among regions, with species that use woodlands being rare in one of the regions. Repeated measures analysis of variance indicated that species richness differed significantly among regions but not among sub-regions nested within regions. Species richness did not change significantly over time and there was no region by year effect. Species richness was highly correlated with local variables related to fish predation and to regional variables related to forest cover. Multiple regression indicated that a combination of local and regional variables best accounted for the variance in species richness, but the amount of regional woodlands was the single most important variable. The pattern of species richness can be explained by historical deforestation as the primary process.     

The mathematical influence on global patterns of biodiversity

Although we understand how species evolve, we do not appreciate how this process has filled an empty world to create current patterns of biodiversity. Here, we conduct a numerical experiment to determine why biodiversity varies spatially on our planet. We show that spatial patterns of biodiversity are mathematically constrained and arise from the interaction between the species’ ecological niches and environmental variability that propagates to the community level. Our results allow us to explain key biological observations such as (a) latitudinal biodiversity gradients (LBGs) and especially why oceanic LBGs primarily peak at midlatitudes while terrestrial LBGs generally exhibit a maximum at the equator, (b) the greater biodiversity on land even though life first evolved in the sea, (c) the greater species richness at the seabed than at the sea surface, and (d) the higher neritic (i.e., species occurring in areas with a bathymetry lower than 200 m) than oceanic (i.e., species occurring in areas with a bathymetry higher than 200 m) biodiversity. Our results suggest that a mathematical constraint originating from a fundamental ecological interaction, that is, the niche–environment interaction, fixes the number of species that can establish regionally by speciation or migration.     

Regional patterns of diversity and estimates of global insect species richness

The total number of insect species in the world is an important if elusive figure. We use a fresh approach to estimate global insect species richness, based on biogeographic patterns of diversity of well or better documented taxa. Estimates generated by various calculations, all variations on a theme, largely serve to substantiate suggestions that insect species are likely to number around 10 million or less.     

Diversification and biogeographic patterns in four island radiations of passerine birds

Declining diversification rates over time are a well-established evolutionary pattern, often interpreted as indicating initial rapid radiation with filling of ecological niche space. Here, we test the hypothesis that island radiations may show constant net diversification rates over time, due to continued expansion into new niche space in highly dispersive taxa. We investigate diversification patterns of four passerine bird families originating from the Indo-Pacific archipelagos, and link these to biogeographic patterns to provide independent indications of niche filling. We find a declining diversification rate for only one family, the Paradisaeidae (41 species). These are almost completely restricted to New Guinea, and have on average smaller species ranges and higher levels of species richness within grid cells than the other three families. In contrast, we cannot reject constant diversification rates for Campephagidae (93 species), Oriolidae (35 species), and Pachycephalidae (53 species), groups that have independently colonized neighboring archipelagos and continents. We propose that Paradisaeidae have reached the diversity limit imposed by their restricted distribution, whereas high dispersal and colonization success across the geologically dynamic Indo-Pacific archipelagos may have sustained high speciation rates for the other three families. Alternatively, increasing extinction rates may have obscured declining speciation rates in those three phylogenies.     

Are communities saturated? On the relationship between α, β and γ diversity

A popular way to suggest a regional influence on local species diversity has been to plot local versus regional diversity. The form of these curves has been interpreted as evidence for or against "community saturation" due to species interactions. This interpretation, however, is unwarranted. Using the concepts of α, β and γ diversity, I show that local–regional richness curves are determined by the way total diversity is partitioned between its α and β components, which itself is a matter of scale. Changing the scale of the local community amounts to changing the scale at which the heterogeneity of the interactions between organisms and their environment manifests itself, and hence the balance between α and β diversity. Community saturation may occur because of physical limitations, but there are no theoretical grounds for the belief that species interactions set an absolute upper limit to diversity at any scale. A distinction between different meanings of the concept of "saturation" is proposed to clarify this issue. I argue that the challenge now is to understand the relationship between α and β diversity at multiple scales, and the processes that determine it.     

Diversity patterns of stygobiotic crustaceans across multiple spatial scales in Europe

1. Using species distribution data from 111 aquifers distributed in nine European regions, we examined the pairwise relationships between local species richness (LSR), dissimilarity in species composition among localities, and regional species richness (RSR). In addition, we quantified the relative contribution of three nested spatial units – aquifers, catchments and regions – to the overall richness of groundwater crustaceans.
2. The average number of species in karst and porous aquifers (LSR) varied significantly among regions and was dependent upon the richness of the regional species pool (RSR). LSR–RSR relationships differed between habitats: species richness in karstic local communities increased linearly with richness of the surrounding region, whereas that of porous local communities levelled off beyond a certain value of RSR.
3. Dissimilarity in species composition among aquifers of a region increased significantly with increasing regional richness because of stronger habitat specialisation and a decrease in the geographic range of species among karst aquifers. Species turnover among karst aquifers was positively related to RSR, whereas this relationship was not significant for porous aquifers.
4. The contribution of a given spatial unit to total richness increased as size of the spatial unit increased, although 72% of the overall richness was attributed to among-region diversity. Differences in community composition between similar habitats in different regions were typically more pronounced than between nearby communities from different habitats.
5. We conclude by calling for biodiversity assessment methods and conservation strategies that explicitly integrate the importance of turnover in community composition and habitat dissimilarity at multiple spatial scales.     

城市公园和郊区公园生物多样性评估的指标

随着城市化进程的加快,城市的生物多样性不可避免地受到城市化的各种影响,城市及其郊区的生物多样性保护越来越受到人们的重视。城市公园与郊区公园中往往具有高度多样化的生境,并保存着某些自然植被片段和动物物种,那里的生物多样性较高。可见,在城市和郊区的生物多样性保护中,公园生物多样性的保护是一个非常关键的环节,而对其生物多样性的评估又是有效保护的基础。目前,我国生物多样性评估方面的研究工作多集中于物种水平,而对生境的研究较少,但实践证明,保护生境比保护物种更为重要。本文介绍了比利时学者Hermy & Cornelis在比利时西佛兰德省的Loppem市立公园的保护实践中构建的一种对城市公园和郊区公园中的生物多样性进行评估的方法。该方法从两个方面展开：生境多样性和物种多样性。在生境水平上,首先对各种生境单元进行分类,这些单元被分为面状、线状和点状要素。针对每种要素,分别计算了Shannon-Wiener多样性指数和饱和度指数。饱和度指数是实际的多样性指数与最大可能的多样性指数之比。在物种水平上,使用了物种数、Shannon-Wiener多样性指数和饱和度指数来评估公园中的高等植物、蝴蝶、两栖动物和饲养的鸟类等物种。这样,就获得了20个生物多样性指标,根据这些指数就可以对Loppem市立公园内的生物多样性进行评估。结合我国生物多样性评估工作的实际要求,文章最后对上述方法进行了讨论,指出该方法对我国公园的生物多样性评估工作具有借鉴意义,但在运用时各地需要结合本地的实际情况。     

Global patterns of specialization and coexistence in bird assemblages

Aim Increased specialization has been hypothesized to facilitate local coexistence and thus high species richness, but empirical evaluations of the richness–specialization relationships have been relatively scant. Here, we provide a first assessment of this relationship for terrestrial bird assemblages at global extent and from fine to coarse grains. Location World‐wide. Methods We use two indices of specialization that describe species‐level resource use: diet and habitat specialization. The relationship between richness and mean assemblage‐level specialization was independently assessed at realm, biome‐realm, 12,100 km² equal‐area grid cells and fine‐grained scales. To identify assemblages that are diverse relative to environmental conditions we: (1) applied quantile regressions, (2) statistically accounted for other environmental variables which may constrain richness, and (3) parsed the data according to the residuals of a model relating species richness to the environmental variables. Results Assemblage species richness increases with both measures of specialization at all scales. Statistically, richness appears constrained by levels of specialization, with the highest richness values only found in specialized assemblages. Richness is positively associated with specialization even after accounting for gradients in resource availability. Net primary productivity and assemblage specialization have complementary statistical effects on assemblage species richness. Contrary to expectations based on niche partitioning of local resources, the relationship between specialization and richness is steep even at coarse scales. Main conclusions The results demonstrate that for an entire clade, totalling > 9000 species, specialization and species richness are related, at least for diverse assemblages. The strong patterns observed across scales suggest that this relationship does not solely originate from (1) limits on coexistence in present‐day assemblages, or (2) increased specialization in richer assemblages imposed by species’ abilities to partition ecological space. Instead, regional‐scale influences on the species pool may determine much of the observed relationship between richness and specialization. Although causal attribution is not straightforward, these findings support the idea that, for the scale of our analysis, specialization may be related to the past origination of high‐diversity assemblages, rather than their contemporary assembly.     

Global patterns of plant diversity

Summary Using 94 data sets from across the globe, we explored patterns of mean community species richness, landscape species richness, mean similarity among communities and mosaic diversity. Climate affected community species richness primarily through productivity while other climatic factors were secondary. Climatic equability affected species richness only in temperate regions where richness was greatest at high levels of temperature variability and low levels of precipitation variability. Landscape species richness correlated positively with community species richness. A global gradient in mean similarity existed but was uncorrelated with community species richness. Mean similarity was least and mosaic diversity was greatest between 25 and 30° latitude. The most diverse landscapes (low mean similarity) correlated with warm temperatures, high elevations, large areas and large seasonal temperature fluctuations. The most complex landscapes (high mosaic diversity) correlated with large areas, high productivity and warm winters. We compared diversity measures among continents and found only one significant difference: Australian landscapes have greater mosaic diversity than African landscapes. Based on our analyses we propose two hypotheses: (1) for plants, biotic interactions are more important in structuring landscapes in warmer climates and (2) longer isolated landscapes have more clearly differentiated ecological subunits.     

叶蜂总科生物地理研究IV东亚区特有属的分布式样及迁移路线(膜翅目)

本文分析归纳了东亚叶蜂总科特有属的分布式样及迁移路线。东亚区分布的１７９个叶蜂总科特有属可归纳为１个主要特化中心：川滇缅高原;５个小型次级特化中心：喜马拉雅中段小中心、浙闽山地小中心、秦巴山地小中心、燕山山地小中心和长白山地小中心;４条主要迁移演化路线：从主要中心沿喜马拉雅山脉走廊向西发展的西线,从主要中心沿缅－马走廊向南发展的南线,从主要中心沿南岭走廊向东发展的东线,从主要中心向北沿第二阶梯东缘走廊（大娄山－伏牛山－太行山－燕山）及西部走廊（第一阶梯东缘走廊）发展的北线,其中北线因四川盆地隔离可分为东西两支,但东西两支从秦岭山脉始重新部分融合;一个中心区域类型和３８种分布式样。     

Threats of land use to the global diversity of vascular plants

Aim

Land use is a main driver of biodiversity loss worldwide. However, quantifying its effects on global plant diversity remains a challenge due to the limited availability of data on the distributions of vascular plant species and their responses to land use. Here, we estimated the global extinction threat of land use to vascular plant species based on a novel integration of an ecoregion-level species-area model and the relative endemism richness of the ecoregions.

Location

Global.

Methods

First, we assessed ecoregion-level extinction threats using a countryside species–area relationship model based on responses of local plant richness to land use types and intensities and a high-resolution global land use map. Next, we estimated global species extinction threat by multiplying the relative endemism richness of each ecoregion with the ecoregion-level extinction threats.

Results

Our results indicate that 11% of vascular plant species are threatened with global extinction. We found the largest extinction threats in the Neotropic and Palearctic realms, mainly due to cropland of minimal and high intensity, respectively.

Main Conclusions

Our novel integration of the countryside species–area relationship and the relative endemism richness allows for the identification of hotspots of global extinction threat, as well as the contribution of specific land use types and intensities to this threat. Our findings inform where the development of measures to protect or restore plant diversity globally are most needed.