New insights into the organisation of the oxidative phosphorylation system in the example of pea shoot mitochondria

The physical and functional organisation of the OXPHOS system in mitochondria in vivo remains elusive. At present, different models of OXPHOS arrangement, representing either highly ordered respiratory strings or, vice versa, a set of randomly dispersed supercomplexes and respiratory complexes, have been suggested. In the present study, we examined a supramolecular arrangement of the OXPHOS system in pea shoot mitochondria using digitonin solubilisation of its constituents, which were further analysed by classical BN-related techniques and a multidimensional gel electrophoresis system when required. As a result, in addition to supercomplexes I₁III₂, I₁III₂IV_n and III₂IV_1–2, dimer V₂, and individual complexes I-V previously detected in plant mitochondria, new OXPHOS structures were also revealed. Of them, (1) a megacomplex (II_xIII_yIV_z)n including complex II, (2) respirasomes I₂III₄IV_n with two copies of complex I and dimeric complex III₂, (3) a minor new supercomplex IV₁Va₂ comigrating with I₁III₂, and (4) a second minor form of ATP synthase, Va, were found. The activity of singular complexes I, IV, and V was higher than the activity of the associated forms. The detection of new supercomplex IV₁Va₂, along with assemblies I₁III₂ and I_1–2III_2–4IV_n, prompted us to suggest the occurrence of in vivo oxphosomes comprising complexes I, III₂, IV, and V. The putative oxphosome's stoichiometry, historical background, assumed functional significance, and subcompartmental location are discussed herein.     

Characterization of the A2AR-D2R interface: focus on the role of the C-terminal tail and the transmembrane helices

A single serine point mutation (S374A) in the adenosine A_2A receptor (A_2AR) C-terminal tail reduces A_2AR-D₂R heteromerization and prevents its allosteric modulation of the dopamine D₂ receptor (D₂R). By means of site directed mutagenesis of the A_2AR and synthetic transmembrane (TM) α-helix peptides of the D₂R we further explored the role of electrostatic interactions and TM helix interactions of the A_2AR-D₂R heteromer interface. We found evidence that the TM domains IV and V of the D₂R play a major role in the A_2AR-D₂R heteromer interface since the incubation with peptides corresponding to these domains significantly reduced the ability of A_2AR and D₂R to heteromerize. In addition, the incubation with TM-IV or TM-V blocked the allosteric modulation normally found in A_2AR-D₂R heteromers. The mutation of two negatively charged aspartates in the A_2AR C-terminal tail (D401A/D402A) in combination with the S374A mutation drastically reduced the physical A_2AR-D₂R interaction and lost the ability of antagonistic allosteric modulation over the A_2AR-D₂R interface, suggesting further evidence for the existence of an electrostatic interaction between the C-terminal tail of A_2AR and the intracellular loop 3 (IL3) of D₂R. On the other hand, molecular dynamic model and bioinformatic analysis propose that specific AAR, AQE, and VLS protriplets as an important motive in the A_2AR-D_2LR heteromer interface together with D_2LR TM segments IV/V interacting with A_2AR TM-IV/V or TM-I/VII.     

Dependence of the Q10 values on the depth of the soil temperature measuring point

The parameter Q₁₀ is commonly used to express the relationship between soil CO₂ efflux and soil temperature. One advantage of this parameter is its application in a model expression of respiration losses of different ecosystems. Correct specification of Q₁₀ in these models is indispensable. Soil surface CO₂ efflux and soil temperature at different depths were measured in a 21-year-old Norway spruce stand and a mountain grassland site located at the Experimental Ecological Study Site Bily Kriz, Beskydy Mts. (NE Czech Republic), using automated gasometric systems. A time-delay and goodness-of-fit between soil CO₂ efflux and soil temperature at different measuring depths were determined. Wide ranges of values for the time-delay of CO₂ efflux in response to temperature, Q₁₀ and the determination coefficient (R²) between CO₂ efflux and temperature were obtained at the both sites. The values of Q₁₀ and the CO₂ time-delay increased with depth, while the R² of the CO₂-temperature relationship significantly decreased. Soil temperature records obtained close to the soil surface showed the highest values of R² and the lowest value of the time-delay at both sites. Measurement of soil temperature at very shallow soil layer, preferably at the soil surface, is highly recommended to determine useable values of Q₁₀. We present a new procedure to normalize Q₁₀ values for soil temperatures measured at different depths that would facilitate comparison of different sites.     

Effect of bisenoic prostaglandins on the uterine vasculature of the nonpregnant sheep

The effects of the bisenoic prostaglandins on the uterine vasculature and uterine contractile activity have been evaluated in an unanesthetized chronically catheterized nonpregnant sheep preparation. Changes in uterine blood flow were monitored with electromagnetic flow probes while uterine contractile activity and tone were determined via an intra-uterine balloon connected to a pressure transducer. Prostaglandins A₂, D₂, E₂, and prostacyclin (PGI₂) were all found to be vasodilators. PGD₂ and PGI₂ were much more potent than PGA₂ and PGE₂ in dilating the uterine vasculature. The prostacyclin breakdown product 6-keto PGF_1α, PGF_2α, thromboxane B₂, and the endoperoxide analogues U44069 and U46619 produced vasoconstriction of the uterine vasculature. Prostaglandins A₂, D₂ and F_2α increased while PGI₂ decreased uterine contractile activity. PGF_2α also increased uterine tone suggesting that a portion of its vasoconstrictor activity may be due to mechanical compression of the uterine vasculature.     

Studies of the pyrolysis of tetraethylammonium tetrahydroborate

Tetraethylammonium tetrahydroborate, Et₄NBH₄, in suspension in refluxing decane-dodecane mixtures has been pyrolysed at temperatures between 175 and 190 °C. Et₃NBH₃, which is produced by partial decomposition of Et₄NBH₄, reacts with Et₄NBH₄ to give the intermediate Et₄NB₃H₈. Et₄NBH₄ and Et₃NBH₃ are also involved in the conversion of Et₄NB₃H_8. to (Et₄N)₂B₉H₉, (Et₄N)₂B₁₀H₁₀, Et₄NB₁₁H₁₄ and (Et₄N)₂B₁₂H₁₂ which are formed in varying proportions during the pyrolysis. A 1:1 Et₄NBH₄Et₃NBH₃ mixture gives the same mixture of final products in the same proportions as Et₄NBH₄ alone, but the reaction time is shorter.Results obtained under various conditions, for instance without solvent at 10⁻² torr (50% yield), are explained by the transfer of BH₃ groups occurring not only through Et₃NBH₃, but also by solid—solid reactions involving Et₄NBH₄. A more complete reaction of Et₃NBH₃ is obtained, giving quantitative yields, only when Et₃N is evacuated from the reaction mixture. Optimum conditions for the formation of each hydroborate are examined.     

On the causes of trends in the seasonal amplitude of atmospheric CO2

No consensus has yet been reached on the major factors driving the observed increase in the seasonal amplitude of atmospheric CO₂ in the northern latitudes. In this study, we used atmospheric CO₂ records from 26 northern hemisphere stations with a temporal coverage longer than 15 years, and an atmospheric transport model prescribed with net biome productivity (NBP) from an ensemble of nine terrestrial ecosystem models, to attribute change in the seasonal amplitude of atmospheric CO₂. We found significant (p < .05) increases in seasonal peak‐to‐trough CO₂ amplitude (AMP_P‐T) at nine stations, and in trough‐to‐peak amplitude (AMP_T‐P) at eight stations over the last three decades. Most of the stations that recorded increasing amplitudes are in Arctic and boreal regions (>50°N), consistent with previous observations that the amplitude increased faster at Barrow (Arctic) than at Mauna Loa (subtropics). The multi‐model ensemble mean (MMEM) shows that the response of ecosystem carbon cycling to rising CO₂ concentration (eCO₂) and climate change are dominant drivers of the increase in AMP_P‐T and AMP_T‐P in the high latitudes. At the Barrow station, the observed increase of AMP_P‐T and AMP_T‐P over the last 33 years is explained by eCO₂ (39% and 42%) almost equally than by climate change (32% and 35%). The increased carbon losses during the months with a net carbon release in response to eCO₂ are associated with higher ecosystem respiration due to the increase in carbon storage caused by eCO₂ during carbon uptake period. Air‐sea CO₂ fluxes (10% for AMP_P‐T and 11% for AMP_T‐P) and the impacts of land‐use change (marginally significant 3% for AMP_P‐T and 4% for AMP_T‐P) also contributed to the CO₂ measured at Barrow, highlighting the role of these factors in regulating seasonal changes in the global carbon cycle.     

Some relationships between the biochemistry of photosynthesis and the gas exchange of leaves

A series of experiments is presented investigating short term and long term changes of the nature of the response of rate of CO₂ assimilation to intercellular p(CO₂). The relationships between CO₂ assimilation rate and biochemical components of leaf photosynthesis, such as ribulose-bisphosphate (RuP₂) carboxylase-oxygenase activity and electron transport capacity are examined and related to current theory of CO₂ assimilation in leaves of C₃ species. It was found that the response of the rate of CO₂ assimilation to irradiance, partial pressure of O₂, p(O₂), and temperature was different at low and high intercellular p(CO₂), suggesting that CO₂ assimilation rate is governed by different processes at low and high intercellular p(CO₂). In longer term changes in CO₂ assimilation rate, induced by different growth conditions, the initial slope of the response of CO₂ assimilation rate to intercellular p(CO₂) could be correlated to in vitro measurements of RuP₂ carboxylase activity. Also, CO₂ assimilation rate at high p(CO₂) could be correlated to in vitro measurements of electron transport rate. These results are consistent with the hypothesis that CO₂ assimilation rate is limited by the RuP₂ saturated rate of the RuP₂ carboxylase-oxygenase at low intercellular p(CO₂) and by the rate allowed by RuP₂ regeneration capacity at high intercellular p(CO₂).     

On the Origin and the Signal-Shaping Mechanism of the Fast Photosignal in the Vertebrate Retina

Fast photosignals (FPS) with R₁ and R₂ components were measured in retinas of cattle, rat, and frog within a temperature range of 0° to 60°C. Except for temperatures near 0°C the signal rise of the R₁ component was determined by the duration of the exciting flash. The kinetics of the R₂ component and the meta transition of rhodopsin in the cattle and rat retina were compared. For the analysis of the FPS it is presupposed that the signal is produced by light-induced charges on the outer segment envelope membrane that spread onto the whole plasma membrane of the photoreceptor cell. To a good approximation, this mechanism can be described by a model circuit with two distinct capacitors. In this model, the charging capacitance of the pigmented outer segment envelope membrane and the capacitance of the receptor's nonpigmented plasma membrane are connected via the extra- and intracellular electrolyte resistances. The active charging is explained by two independent processes, both with exponential rise (R₁ and R₂), that are due to charge displacements within the pigmented envelope membrane. The time constant τ₂ of the R₂ membrane charging process shows a strong temperature dependence that of the charge redistribution, τ_r, a weak one. In frog and cattle retinas the active charging is much slower within a large temperature range than the passive charge redistribution. From the two-capacitor model it follows for τ_r « τ₂ that the rise of the R₂ component is determined by τ_r, whereas the decay is given by τ₂. For the rat retina, however, τ₂ approaches τ_r at physiological temperatures and becomes <τ_r above 45°C. In this temperature range where τ₂ ≈ τ_r, both processes affect rise and decay of the photosignal. The absolute values of τ_r are in good accordance with the known electric parameters of the photoreceptors. At least in the cattle retina, the time constant τ₂ is identical with that of the slow component of the meta II formation. The strong temperature dependence of the meta transition time gives rise to the marked decrease of the R₂ amplitude with falling temperature. As the R₁ rise could not be fully time resolved the signal analysis does not yield the time constant τ₁ of the R₁ generating process. It could be established, however, within the whole temperature range that the decay of the R₁ component is determined by τ_r. Using an extended model that allows for membrane leakage, we show that in normal ringer solution the membrane time constant does not influence the signal time-course and amplitude.     

Phosphorylation in the C-terminus of the rat connexin46 (rCx46) and regulation of the conducting activity of the formed connexons

To analyse the role of PKC-dependent phosphorylation in the C-terminus of rCx46 in regulation of rCx46 connexons, truncated mutants rCx46_45.3 and rCx46_44.2 which end before and after PKC-dependent phosphorylation sites respectively were generated. Both rCx46_45.3 and rCx46_44.2 formed connexons in Xenopus oocytes similar to Cx46_wt-connexons. They were activated by depolarisation above −40 mV and at voltages above 50 mV, inactivation was spontaneously observed or induced by PKC activator TPA, suggesting that inactivation does not require PKC-dependent phosphorylation in the C-terminus. Three casein-kinase-II-(CKII)-dependent phosphorylation sites were also identified. rCx46_37.7 and rCx46_28.2 respectively without two or all of these sites were generated. rCx46_37.7-connexons were similar to rCx46_wt-connexons. rCx46_28.2-connexons comparable to rCx46_wt-connexons were observed after injection of 50 times more rCx46_28.2-mRNA (25 ng per oocyte). CKII-blocker inhibited depolarisation-evoked currents in oocytes injected with 0.5 ng per oocyte rCx46_37.7-mRNA or rCx46_wt-mRNA. Injection of 25 ng per oocyte rCx46_37.7-mRNA or rCx46_wt-mRNA overcame the effect of CKII-inhibitor. We propose that CKII-dependent phosphorylation in the C-terminus accelerates formation of rCx46-connexons.     

Ethylene-light relationship in the growth of the rice coleoptile

Summary Ethylene stimulated growth of rice coleoptiles in the dark and after an irradiation with red light. The red-light inhibition of rice-coleoptile growth was more pronounced when only endogenously evolved C₂H₄ was involved than it was under C₂H₄-free (C₂H₄ removed) or C₂H₄-saturated (20 ppm C₂H₄ added) conditions.     

Probing the role of Valine 185 of the D1 protein in the Photosystem II oxygen evolution

In Photosystem II (PSII), the Mn₄CaO₅-cluster of the active site advances through five sequential oxidation states (S₀ to S₄) before water is oxidized and O₂ is generated. The V185 of the D1 protein has been shown to be an important amino acid in PSII function (Dilbeck et al. Biochemistry 52 (2013) 6824–6833). Here, we have studied its role by making a V185T site-directed mutant in the thermophilic cyanobacterium Thermosynechococcus elongatus. The properties of the V185T-PSII have been compared to those of the WT*3-PSII by using EPR spectroscopy, polarography, thermoluminescence and time-resolved UV–visible absorption spectroscopy. It is shown that the V185 and the chloride binding site very likely interact via the H-bond network linking Tyr_Z and the halide. The V185 contributes to the stabilization of S₂ into the low spin (LS), S?=?1/2, configuration. Indeed, in the V185T mutant a high proportion of S₂ exhibits a high spin (HS), S?=?5/2, configuration. By using bromocresol purple as a dye, a proton release was detected in the S₁Tyr_Z?→?S₂^HSTyr_Z transition in the V185T mutant in contrast to the WT*3-PSII in which there is no proton release in this transition. Instead, in WT*3-PSII, a proton release kinetically much faster than the S₂^LSTyr_Z?→?S₃Tyr_Z transition was observed and we propose that it occurs in the S₂^LSTyr_Z?→?S₂^HSTyr_Z intermediate step before the S₂^HSTyr_Z?→?S₃Tyr_Z transition occurs. The dramatic slowdown of the S₃Tyr_Z?→?S₀Tyr_Z transition in the V185T mutant does not originate from a structural modification of the Mn₄CaO₅ cluster since the spin S?=?3?S₃ EPR signal is not modified in the mutant. More probably, it is indicative of the strong implication of V185 in the tuning of an efficient relaxation processes of the H-bond network and/or of the protein.     

Characteristics of the core protein of the aggregating proteoglycan from the Swarm rat chondrosarcoma

A ternary complex of hyaluronic acid-binding region and link protein bound to hyaluronic acid was isolated from limit clostripain digests of proteoglycan aggregates isolated from the Swarm rat chondrosarcoma. Under these conditions, the hyaluronic acid-binding region has a molecular weight of ? 65,000 (HA-BR₆₅). N-terminal amino acids in the complex were selectively ^l4C-carbamylated. The resulting derivatized HA-BR₆₅ was isolated, and tryptic peptide maps were prepared and developed on two-dimensional TLC sheets. A single, labeled peptide was obtained which gave a M_r by ? 8,000 by SDS-PAGE. Chymotrypsin digestion of the ternary complex reduced the molecular weight of HA-BR₆₅ to a polypeptide of ? 55,000 (HA-BR₅₅) which still retains the same N-terminal tryptic peptide. Partial digestion of proteoglycan aggregates with clostripain generated a series of larger intermediates with the hyaluronic acid-binding region. Direct SDS-PAGE analysis revealed one major intermediate with M_r ? 109,000 (HA-BR₁₀₉) as well as HA-BR₆₅. After chondroitinase digestion, two additional prominent intermediates were observed on a SDS-PAGE gel at M_r ? 120,000 (HA-BR₁₂₀) and ? 140,000 (HA-BR₁₄₀). All the intermediates were recognized by a monoclonal antibody specific for the hyaluronic acid-binding region, and all of them contained the same N-terminal tryptic peptide. The results indicate that the N terminus of the core protein is at the hyaluronic acid-binding end of the proteoglycan and that the chondroitin sulfate chains are first present on the core protein in a region between 109,000 and 120,000 molecular weight away from the N terminus.     

Involvement of prostaglandins in the spawning of the scallop,Patinopecten yessoensis

1. A high performance liquid chromatography (HPLC) using 9-anthryldiazomethane (ADAM) as a fluorescent reagent was employed to detemine the levels of endogenous prostaglandins (PGs) in the central nervous system, gonad, gill and hemolymph of the scallop, and the authors have also verified the involvement of PGs during spawning induced by u.v. ray-irradiated seawater.2. PGF_2α, PGE₂, PGD₂, 6-keto-PGF_1α. and TXB₂ were identified in all tissue and hemolymph, while no PGD₂ was found in the hemolymph by HPLC.3. PGF_2α, PGE₂ and PGD₂ levels in the ovary were about four times as much as those in the testis during the spawning season.4. PGF_2α, PGE₂ and PGD₂ levels in the ovary decreased during spawning, while, on the contrary, those in the testis increased during spawning. No changes of PGs levels were observed in the central nervous system.5. These results suggest the possibility that PGF_2α and PGE₂ are, especially, implicated in the spawning of the scallop; however, they also indicate that a difference between the functional mechanism of PGs in the ovary and that in the testis exists during spawning.     

Effect of Different Gibberellins on the Growth of the Hypocotyl

It has been stated earlier that hypocotyls of different plants show different growth response to added GA₃. It was suggested that this difference may be due to the requirement of some specific gibberellin. Hence hypocotyl growth response of three groups of plants has been studied with different gibberellins: group one showing no or insignificant growth response, group two showing 150–200 per cent growth response and group three showing 300–500 per cent growth response to added GA₃. Eight gibberellins were used, viz., GA₁, GA₂, GA₃, GA₄, GA₅, GA₇, GA₈ and GA₉, to test if this varying response is connected with the requirement of some specific gibberellin. In general, the results obtained do not favour this view. Iberis amara, a plant showing no response to added GA₃, Dianthus sp., a plant showing 150 to 200 per cent response and Lactuca satwa, Antirrhinum majus and Nicotiana tabacum, plants showing 300 to 500 per cent response, were promoted by all the gibberellins tested to a similar extent as by GA₃, with the exception of GA₈ which was inactive in most of the cases.     

Structural dynamics of the cell wall precursor lipid II in the presence and absence of the lantibiotic nisin

Representing a physiological “Achilles' heel”, the cell wall precursor lipid II (L_II) is a prime target for various classes of antibiotics. Over the years L_II-binding agents have been recognized as promising candidates and templates in the search for new antibacterial compounds to complement or replace existing drugs. To elucidate the molecular structural basis underlying L_II functional mechanism and to better understand if and how lantibiotic binding alters the molecular behavior of L_II, we performed molecular dynamics (MD) simulations of phospholipid membrane-embedded L_II in the absence and presence of the L_II-binding lantibiotic nisin. In a series of 2 × 4 independent, unbiased 100 ns MD simulations we sampled the conformational dynamics of nine L_II as well as nine L_II–nisin complexes embedded in an aqueous 150 mM NaCl/POPC phospholipid membrane environment. We found that nisin binding to L_II induces a reduction of L_II mobility and flexibility, an outward shift of the L_II pentapeptide, an inward movement of the L_II disaccharide section, and an overall deeper insertion of the L_II tail group into the membrane. The latter effect might indicate an initial step in adopting a stabilizing, scaffold-like structure in the process of nisin-induced membrane leakage. At the same time nisin conformation and L_II interaction remain similar to the 1WCO L_II–nisin NMR solution structure.     

Some fundamental remarks on the polarographic determination of the catalase activity and the H2O2 production of bacteria

Conclusions and summary 1. Oxygen has two polarographic waves of equal height (h.w.p. –0.05 V and –1.07 V), which disturb the direct polarographic determination of H₂O₂.2. In determining H₂O₂ it is possible to eliminate this disturbance by reducing the total height of the waves by 2 × the height of the first O₂ wave.3. In a decomposing H₂O₂ solution the O₂ concentration exceeds more than 5 × the normal O₂ concentration in an aqueous solution.4. In a decomposing H₂O₂ solution the H₂O₂ concentration at each moment can only be determined by taking into account the O₂ concentration at that moment.5. Determination without this correction presents too small a catalase activity and may even result in characterising catalase positive bacteria as catalase negative.6. It is possible to demonstrate the H₂O₂ production of catalase negative bacteria by the polarographic method.     

Linkage of the Rf1 gene in the T cytoplasm of maize with genes of the 3rd chromosome

The paper presents results obtained from studying the linkages of the Rf₁ gene causing the restoration of fertility of pollen in the T type of cytoplasmic sterility of maize with signal genes of the 3rd chromosome in the F₂ and B₁ hybrid generations. Crossing of the fertility-restorer lines obtained on the basis of T cytoplasm with signal lines carrying recessive genes of the 3rd linkage group was carried out during the coupling phase. The data obtained on the linkage of genes indicates that the Rf₁ gene is located at the proximal end of the long arm of the 3rd chromosome between loci d₁ and ba₁. The linear sequence of genes and the map of their distances were determined on the basis of experimental recombined values as follows: d₁?26?Rf₁?16(?)?ba₁?42?sh₂.     

Correspondences in the Behavior of the Electroretinogram and of the Potentials Evoked at the Visual Cortex

Electrical potentials from the eye (ERG) and from the contralateral visual cortex were recorded in response to flashes of white and of colored light of various intensities and durations. The evoked potentials were found to parallel the behavior of the ERG in several significant respects. Selective changes in the ERG brought about by increasing the light intensity and by light adaptation led to parallel selective changes in the cortical responses. The dual waves (b₁, b₂) of the ERG were found to have counterparts in two cortical waves (c₁, c₂) which, in respect to changes in light intensity and to light adaptation, behaved analogously to the two retinal components. The responses evoked at high intensity showed only the diphasic c₁-potential. As stimulus intensity was lowered the c₁-wave decreased in magnitude and a delayed c₂-component appeared. The c₂-potential increased in amplitude as light intensity of the flash was further reduced. Eventually the c₂-wave, too, decreased as stimulus reduction continued. There was no wave length specificity in regard to either the duplex b-waves or duplex cortical waves. Both appeared at all wave lengths from 454 mµ to 630 mµ. The two cortical waves evoked by brief flashes of colored light showed all the behavior to changes in stimulus intensity and to light adaptation that occurred with white light.     

Interaction of the FAFB-containing subunit with the Photosystem 1 core heterodimer

The structure of the predicted amino acid sequence in the F_X domain of Photosystem 1 was studied by molecular modeling and a working hypothesis was developed for the functional interaction of PsaC with the core heterodimer. We propose that the intervening sequences between homologous cysteines in the F_X cluster form two flexible loops and participate in the binding of PsaC, and that the arginine residues in the two surface-exposed loops may promote the interaction between the P₇₀₀–F_X core and the subunit. The model was tested experimentally; chemical modification of arginine residues in the P₇₀₀–F_X core using phenylglyoxal prevented reconstitution of the core with PsaC and PsaD after insertion of FeS clusters in vitro. Treatment of the P₇₀₀–F_X core with trypsin also prevented reconstitution of terminal electron transfer to F_AF_B, although neither treatments affected the electron transfer to F_X as judged by flash kinetic spectrophotometry. Electron transfer in the P₇₀₀–F_AF_B complex was not impaired by either phenylglyoxal or trypsin treatment indicating that the small subunit(s) protect the arginine residues that become chemically modified or cleaved. The data are consistent with the working model and point to additional experiments designed to identify the specific residues involved in the interaction between the P₇₀₀–F_X core and PsaC.Abbreviations PG- phenylglyoxal - PS 1- Photosystem 1