From quantum to integrative physiology

Physiology studies the functions of different organs, systems and how they maintain the integrity of organisms. Nervous and endocrine systems react to stimulus, causality plays a key role in their activities. Physical and chemical conditions of fluids in the internal environment serve as a background and an active modulator for regulatory influences. Autacoid formation is in many respects based on probable events. It has been proved, that during the formation of regulatory systems in cell evolution the appearance of regulatory molecules was based on statistical probability of quantum events: sporadical appearance in cells during metabolism of peptides, lipids, hydrolysis of larger molecules on fragments, quanta, which received physiological activity in the form of function regulators. These processes in their adapted, according to Darwin's mechanism of natural selection, value were recorded into the genome since synthesis readings of the polypeptides were fixed. The formation of multicellular organisms was promoted by the arise of regulatory systems and their integration under the supervision of the nervous system.     

Periodicity computation of generalized mathematical biology problems involving delay differential equations

In this paper, we consider a low initial population model. Our aim is to study the periodicity computation of this model by using neutral differential equations, which are recognized in various studies including biology. We generalize the neutral Rayleigh equation for the third-order by exploiting the model of fractional calculus, in particular the Riemann–Liouville differential operator. We establish the existence and uniqueness of a periodic computational outcome. The technique depends on the continuation theorem of the coincidence degree theory. Besides, an example is presented to demonstrate the finding.     

An approach to inverse scattering problems

There are several reasons for investigating the inverse scattering problem in medical image processing. A typical case, that of ultrasonic fields, is considered. Assuming that a plane wave illuminates a weakly inhomogeneous two-dimensional object, the fundamental equation is derived for the scattered waves in integral as well as in differential forms. It is shown that the scattered waves observed on a circle surrounding the object is sufficient to specify the structure of the object. This information is summarized in a single term, which is a function of the wavenumber as well as the angles of incidence and observation. A successive approximation is applied to reconstruct the image of the object from this function. Since no analytic solution is available, several methods of approximations are proposed, and examples of computations are shown for the case of a cylindrical object.     

From comparative physiology to toxicological risk assessment

• 1.1. Comparative physiology may help to improve the toxicologists' ability to assess and predict toxicological risks of chemicals.
• 2.2. Three main lines of approach have been distinguished, A: comparative research concerning the toxicokinetics of chemicals in different species; B: research concerning ecophysiological characteristics and C: studies aimed at the identification of biological markers that can be used to signal toxic effects in both experimental and free living populations of organisms.
• 3.3. Some remarks are made on limiting conditions to be fulfilled in order to make comparative physiology valuable from a toxicological point of view.

     

From growth physiology to systems biology.

As it focuses on the integrated behavior of the entire cell, systems biology is a powerful extension of growth physiology. Here, I briefly trace some of the origins of modern-day bacterial growth physiology and its relevance to systems biology. I describe how growth physiology emerged from the foggy picture of the growth curve as a self-contained entity. For this insight, we can thank Henrici, Hershey, Monod, Maal?e, and others. As a result of their work, growth rate is understood to be the unitary manifestation of the response to nutritional conditions and to the control condition for studies on the effect of environmental stresses. For this response to be usefully reproducible, cultures must be in the steady state known as balanced growth. I point out that present-day experimenters are not always aware of this imperative and thus do not always use conditions that ensure the balanced growth of their control cultures.     

Solving inverse problems for biological models using the collage method for differential equations

In the first part of this paper we show how inverse problems for differential equations can be solved using the so-called collage method. Inverse problems can be solved by minimizing the collage distance in an appropriate metric space. We then provide several numerical examples in mathematical biology. We consider applications of this approach to the following areas: population dynamics, mRNA and protein concentration, bacteria and amoeba cells interaction, tumor growth.     

Bioethical problems in contemporary physiology

The review is devoted to problems of bioethics in modern physiology. Definition of bioethics is presented. One can find short history of the problem. Existing discripancies between interests of scientific research and modern rules of bioethics are discussed. Main principles of experiment in physiology organisation and role in its organisation of bioethics rules are formulated.     

Seed physiology: From ovule to maturing seed

1. The future of the seed is partly predetermined by events (flower formation, flowering, nutrient flow from mother plant, etc.) preceding fertilization and the formation of the gametophyte.
2. The environmental conditions under which the seed matures affect its final physiological constitution. This faet has mostly been neglected by seed physiologists.
3. It is not known how far the triantic nature of the diaspore (seed coat, pulp, etc., 2n of mother plant, embryon of δ +n of Φ, endosperm 2n of Φ +n of δ) affects seed development and germination.
4. The integuments of the ovules of some species have stomata. It is not known if they are functional in gas exchange or are constitutional non-functioning relics.
5. The causes of the growth-degeneration pattern of the nucellus are unknown.
6. During the development of the megaspore mother cell into the mature embryo sac dramatic cellular ultrastructural changes take place. This probably signifies a “change of guards” during which the gametophyte is freed from part of the controls by the ultrastructural units of the mother plant, preparing the ground after fertilization for a new, genetically independent sporophyte.
7. Upon closer examination, the seemingly simple processes of fertilization and embryogenesis, as described in textbooks, turn out to be very complex and full of problems. Is the role each male nucleus plays preordained or is it left to chance which male nucleus goes where? What causes the degeneration of the synergids and of the vegetative nucleus, and what protects the other two male nuclei from a similar fate? Which ultrastructural organelles are carried by the generative nuclei into their respective receptor cells and what is their role in them? Why do zygotes in some species develop after fertilization immediately into an embryo whereas in other species the zygote remains dormant for some time? What causes the polarity of the egg cell which, after fertilization, divides into one developmentally most active apical cell (giving rise to the embryo) and into another “lazy” basal cell which develops into the suspensor of “unknown function?”
8. In the source-sink relationship between photosynthesizing organs and the maturing seed there is one point at which the photosynthates pass from symplast to apoplast to symplast. The mechanism involved is largely unknown as well as the effect which environmental conditions have on this transport.

     

From response to stimulus: adaptive sampling in sensory physiology

Sensory systems extract behaviorally relevant information from a continuous stream of complex high-dimensional input signals. Understanding the detailed dynamics and precise neural code, even of a single neuron, is therefore a non-trivial task. Automated closed-loop approaches that integrate data analysis in the experimental design ease the investigation of sensory systems in three directions: First, adaptive sampling speeds up the data acquisition and thus increases the yield of an experiment. Second, model-driven stimulus exploration improves the quality of experimental data needed to discriminate between alternative hypotheses. Third, information-theoretic data analyses open up novel ways to search for those stimuli that are most efficient in driving a given neuron in terms of its firing rate or coding quality. Examples from different sensory systems show that, in all three directions, substantial progress can be achieved once rapid online data analysis, adaptive sampling, and computational modeling are tightly integrated into experiments.     

Inositide signaling in the nucleus: From physiology to pathology

A inositide-dependent signaling exists in the nucleus. In this review we focused to the nuclear PI-PLC signaling activity, its downstream effects and its role in haematological malignancies. PI-PLC β1 is involved in the physiological control of the cell cycle and by acting on the Cylin D3 promoter plays a crucial role in the process of C2C12 myoblast differentiation. In hematological malignancies recent studies showed that PI-PLC β1 mono-allelic deletion correlates with a higher risk of AML evolution. Moreover it has been shown that PI-PLC β1 promoter is hypermethylated in high-risk MDS patients and that the amount of PI-PLC β1 mRNA could predict the clinical response to azacitidine, a well known demethylating drug.All in all the data reviewed here pave the way to a new prognostic and therapeutic strategy in some haematological malignancies.     

Brown and beige fat: From molecules to physiology

The recent re-discovery of brown adipose tissue (BAT) and even more recent discovery of the browning of white adipose tissue (WAT) in humans have generated intense scientific interest in the role of adipose tissue as potential target against obesity and its metabolic complications. The purpose of this review is to: i) critically evaluate the current evidence on the physiological significance of BAT and the browning of WAT in metabolic function in humans and ii) discuss factors that have been reported to regulate BAT and/or the browning of WAT in humans. The current literature supports that BAT and the browning of WAT constitute promising emerging targets for interventions aiming to prevent and/or treat of obesity and its metabolic complications. Further research is needed to better understand the physiological significance of BAT and browning of WAT in health and disease along with the factors modulating their metabolic function in humans.     

Juvenile hormone-mediated reproduction in burying beetles: From behavior to physiology

The burying beetle, Nicrophorus orbicollis, is the first beetle exhibiting parental care for which endocrinological studies have been initiated. Burying beetles bury and prepare small vertebrate carcasses as a breeding resource for their offspring. After emergence as an adult, hemolymph titers of juvenile hormone and ovarian size increase in concert for 2–3 weeks, and both plateau until an appropriate resource is discovered. Upon finding a suitable carcass, titers of juvenile hormone increase extremely rapidly (<20 min), and within 18 h ovarian mass increases threefold and oviposition begins. This rapid reproductive development is hypothesized to be selected by the intense competition for these protein-rich but quickly deteriorating resources. Burying beetle females exhibit an additional juvenile hormone surge at the time young hatch. This peak in juvenile hormone is hypothesized to be associated with either the considerable behavioral demands which accompany care of young larvae or with a female's willingness to oviposit a replacement clutch should brood failure occur early in the care-giving phase. Parental care has evolved in at least 16 additional families within the Coleoptera. Comparative studies of nonparental and parental groups will be important for understanding how the physiology of ancestral groups affects the evolution of complex social behavior. Arch. Insect Biochem. Physiol. 35:479–490, 1997. © 1997 Wiley-Liss, Inc.     

Integrating knowledge representation and quantitative modelling in physiology

A wealth of potentially shareable resources, such as data and models, is being generated through the study of physiology by computational means. Although in principle the resources generated are reusable, in practice, few can currently be shared. A key reason for this disparity stems from the lack of consistent cataloguing and annotation of these resources in a standardised manner. Here, we outline our vision for applying community-based modelling standards in support of an automated integration of models across physiological systems and scales. Two key initiatives, the Physiome Project and the European contribution - the Virtual Phsysiological Human Project, have emerged to support this multiscale model integration, and we focus on the role played by two key components of these frameworks, model encoding and semantic metadata annotation. We present examples of biomedical modelling scenarios (the endocrine effect of atrial natriuretic peptide, and the implications of alcohol and glucose toxicity) to illustrate the role that encoding standards and knowledge representation approaches, such as ontologies, could play in the management, searching and visualisation of physiology models, and thus in providing a rational basis for healthcare decisions and contributing towards realising the goal of of personalized medicine.