大熊猫及其近缘种rDNA序列变异和系统进化关系

应用ｒＤＮＡ间隔区Ｓｏｕｔｈｅｒｎ转换技术研究大熊猫及其近缘种的分子系统关系。通过比较大熊猫、小熊猫、黑熊、马来熊、浣熊和猞猁的ｒＤＮＡ间隔区限制性内切酶图谱,用最大似然法和简约法构建它们的分子系统树。结果表明大熊猫与熊具有较近的亲缘关系,与小熊猫和浣熊的亲缘关系较远。     

Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene

The complete 12S rRNA gene of 32 carnivore species, including four feliforms and 28 caniforms, was sequenced. The sequences were aligned on the basis of their secondary structures and used in phylogenetic analyses that addressed several evolutionary relationships within the Caniformia. The analyses showed an unresolved polytomy of the basic caniform clades; pinnipeds, mustelids, procyonids, skunks,Ailurus (lesser panda), ursids, and canids. The polytomy indicates a major diversification of caniforms during a relatively short period of time. The lesser panda was distinct from other caniforms, suggesting its inclusion in a monotypic family, Ailuridae. The giant panda and the bears were joined on the same branch. The skunks are traditionally included in the family Mustelidae. The present analysis, however, showed a less close molecular relationship between the skunks and the remaining Mustelidae (sensu stricto) than between Mustelidae (sensu stricto) and Procyonidae, making Mustelidae (sensu lato) paraphyletic. The results suggest that the skunks should be included in a separate family, Mephitidae. Within the Pinnipedia, the grouping of walrus, sea lions, and fur seals was strongly supported. Analyses of a combined set of 12S rRNA and cytochromeb data were generally consistent with the findings based on each gene.     

Cranial capacity in hominid evolution

We present an analysis of cranial capacity of 118 hominid crania available from the literature. The crania belong to both the genusAustralopithecus andHomo and provide a clear outline of hominid cranial evolution starting at more than 3 million years ago. Beginning withA. afarensis there is a clear increase in both absolute and relative brain size with every successive time period.H.s. neandertal has an absolutely and relatively smaller brain size (1412cc, E.Q.=5.6) than fossil modernH.s. sapiens (1487cc, E.Q.=5.9). Three evolutionary models of hominid brain evolution were tested: gradualism, punctuated equilibrium, and a mixed model using both gradualism and punctuated equilibrium. Both parametric and non-parametric analyses show a clear trend toward increasing brain size withH. erectus and a possible relationship within archaicH. sapiens. An evolutionary stasis in cranial capacity could not be refuted for all other taxa. Consequently, the mixed model appears to more fully explain hominid cranial capacity evolution. However, taxonomic decisions could directly compromise the possibility of testing the evolutionary mechanisms hypothesized to be operating in hominid brain expansion.     

Sequencing,annotation and comparative analysis of nine BACs of giant panda (<Emphasis Type="Italic">Ailuropoda melanoleuca</Emphasis>)

A 10-fold BAC library for giant panda was constructed and nine BACs were selected to generate finish sequences. These BACs could be used as a validation resource for the de novo assembly accuracy of the whole genome shotgun sequencing reads of giant panda newly generated by the Illumina GA sequencing technology. Complete sanger sequencing, assembly, annotation and comparative analysis were carried out on the selected BACs of a joint length 878 kb. Homologue search and de novo prediction methods were used to annotate genes and repeats. Twelve protein coding genes were predicted, seven of which could be functionally annotated. The seven genes have an average gene size of about 41 kb, an average coding size of about 1.2 kb and an average exon number of 6 per gene. Besides, seven tRNA genes were found. About 27 percent of the BAC sequence is composed of repeats. A phylogenetic tree was constructed using neighbor-join algorithm across five species, including giant panda, human, dog, cat and mouse, which reconfirms dog as the most related species to giant panda. Our results provide detailed sequence and structure information for new genes and repeats of giant panda, which will be helpful for further studies on the giant panda.     

Progressive changes in brain size and musculo-skeletal traits in seven hominoid populations

Neurological complexity has increased over evolutionary time for invertebrates and vertebrates alike, with the hominid brain tripling in size over the last 3 million years. Since magnetic resonance imaging (MRI) studies among humans indicate a significant correlation (meanr>0.40) between individual differences in brain size and general cognitive ability, it is reasonable to hypothesize that increasing brain size confers greater intelligence. However, larger brains have associated costs, taking longer to build and requiring more energy to run. Sufficient advantages must have accrued for them to override these trade-offs. The present paper documents that in hominoids, as brain size increased from 380 to 1364 cm³ over seven hominoid groups (chimpanzees to australopithecines toHomo habilis toHomo erectus to differences amongHomo sapiens), it was accompanied by changes in 74 musculo-skeletal traits (rs=0.90). These occurred on both cranial traits (temporalis fossae, post-orbital constrictions, mandibles, dentition, nuchal muscle attachments) and on post-cranial traits (pelvic widths, femoral heads, tibial plateaus). It is concluded that in the evolutionary competition to find and fill new niches, there was “room at the top” for greater behavioral complexity and larger brain size, leading to cascading effects on other traits.     

Hemoglobins of pandas

We tried to elucidate the genetical relationship of giant and lesser panda and especially that of Ursidae and Procyonidae by sequence analysis. We sequenced hemoglobins of four Ursidae and also those of giant and lesser panda. The surprising result is that the hemoglobin of both pandas only differs in six amino-acid exchanges whereas to other Carnivores, especially to Ursidae and Procyonidae, there exist much more ones. The interpretation of these and other amino-acid sequences with the maximum parsimony method gave a phylogenetic tree with the Felidae and Canidae representing their expected position and classifying the pandas a family or their own between Ursidae and Procyonidae. Because many sequences are available, with the help of molecular biology one can obtain very detailed information on special biological problems.     

Within species support for the expensive tissue hypothesis: a negative association between brain size and visceral fat storage in females of the Pacific seaweed pipefish

The brain is one of the most energetically expensive organs in the vertebrate body. Consequently, the high cost of brain development and maintenance is predicted to constrain adaptive brain size evolution (the expensive tissue hypothesis, ETH). Here, we test the ETH in a teleost fish with predominant female mating competition (reversed sex roles) and male pregnancy, the pacific seaweed pipefish Syngnathus schlegeli. The relative size of the brain and other energetically expensive organs (kidney, liver, heart, gut, visceral fat, and ovary/testis) was compared among three groups: pregnant males, nonpregnant males and egg producing females. Brood size in pregnant males was unrelated to brain size or the size of any other organ, whereas positive relationships were found between ovary size, kidney size, and liver size in females. Moreover, we found that the size of energetically expensive organs (brain, heart, gut, kidney, and liver) as well as the amount of visceral fat did not differ between pregnant and nonpregnant males. However, we found marked differences in relative size of the expensive organs between sexes. Females had larger liver and kidney than males, whereas males stored more visceral fat than females. Furthermore, in females we found a negative correlation between brain size and the amount of visceral fat, whereas in males, a positive trend between brain size and both liver and heart size was found. These results suggest that, while the majority of variation in the size of various expensive organs in this species likely reflects that individuals in good condition can afford to allocate resources to several organs, the cost of the expensive brain was visible in the visceral fat content of females, possibly due to the high costs associated with female egg production.     

应用RAPD技术对大熊猫分类地位的探讨

采用ＰＣＲ和Ｓｏｕｔｈｅｒｎ杂交等方法对大熊猫与小熊猫、马来熊、浣熊等共有的一条１．３ｋｂ的ＲＡＰＤ产物片段进行了初步分析。研究结果显示,来自于大熊猫的此共有片段可能为一重复序列,并且其内部含有多个随机引物ＡＢ１－０８的结合位点。以此来自于大熊猫的１．３ｋｂ片段为探针进行杂交,发现马来熊ＲＡＰＤ产物中的对应片段显示了很高的同源性,而小熊猫和浣熊ＲＡＰＤ产物则无相应的杂交带。这暗示,从分类地位上来看,大熊猫与熊科马来熊的亲缘关系应更近于与小熊猫和浣熊的亲缘关系,应与马来熊一样划分为熊科。本研究为大熊猫分类地位的确定提供了又一分子生物学证据     

大熊猫、小熊猫和黑熊血红蛋白的组份分离、结晶及氨基酸组成分析

 聚丙烯酰胺凝胶电泳和羧甲基纤维素柱层析都表明大熊猫(Ailuropodmelanoleuca)、小熊猫(Ailurus fulgens)和黑熊(Selenarctos thibetanus)的血红蛋白各有两个组份。在近似的条件下得到了它们的晶体。三种动物血红蛋白的氨基酸组成相似,而且N-末端氨基酸都是Val。有待进一步测定全部氨基酸顺序,以揭示它们之间的异同和亲缘关系。     

应用兔抗大熊猫免疫球蛋白G血清探讨大熊猫的分类地位

从大熊猫血清中纯化出免疫球蛋白(IgG),以此作为抗原免疫家兔,获得兔抗大熊猫IgG血清。以黑熊、小熊猫、狗、猫等动物血清为抗原,兔抗大熊猫IgG 血清为抗体．进行了免疫扩散和微量免疫电泳实验。 实验结果表明,收集的食肉目动物：黑熊、小熊猫、狗、猫的血清都可与兔抗大熊猫GIg血清进行沉淀反应,其中尤以黑熊的反应最强且与大熊猫的反应沉淀线完全融合;小熊猫、狗、猫反应较弱且融入大熊猫反应沉淀线后形成树板状。从此看出大熊猫lgG 与黑熊的IgG最相似,从亲缘关系上讲,二者更为接近,大熊猫反应属熊科。     

Characterizing the spatial distribution of giant pandas (Ailuropoda melanoleuca) in fragmented forest landscapes

Aim To examine the effects of forest fragmentation on the distribution of the entire wild giant panda (Ailuropoda melanoleuca) population, and to propose a modelling approach for monitoring the spatial distribution and habitat of pandas at the landscape scale using Moderate Resolution Imaging Spectro‐radiometer (MODIS) enhanced vegetation index (EVI) time‐series data. Location Five mountain ranges in south‐western China (Qinling, Minshan, Qionglai, Xiangling and Liangshan). Methods Giant panda pseudo‐absence data were generated from data on panda occurrences obtained from the third national giant panda survey. To quantify the fragmentation of forests, 26 fragmentation metrics were derived from 16‐day composite MODIS 250‐m EVI multi‐temporal data and eight of these metrics were selected following factor analysis. The differences between panda presence and panda absence were examined by applying significance testing. A forward stepwise logistic regression was then applied to explore the relationship between panda distribution and forest fragmentation. Results Forest patch size, edge density and patch aggregation were found to have significant roles in determining the distribution of pandas. Patches of dense forest occupied by giant pandas were significantly larger, closer together and more contiguous than patches where giant pandas were not recorded. Forest fragmentation is least in the Qinling Mountains, while the Xiangling and Liangshan regions have most fragmentation. Using the selected landscape metrics, the logistic regression model predicted the distribution of giant pandas with an overall accuracy of 72.5% (κ = 0.45). However, when a knowledge‐based control for elevation and slope was applied to the regression, the overall accuracy of the model improved to 77.6% (κ = 0.55). Main conclusions Giant pandas appear sensitive to patch size and isolation effects associated with fragmentation of dense forest, implying that the design of effective conservation areas for wild giant pandas must include large and dense forest patches that are adjacent to other similar patches. The approach developed here is applicable for analysing the spatial distribution of the giant panda from multi‐temporal MODIS 250‐m EVI data and landscape metrics at the landscape scale.     

Brains of Vespertilionids II. Vespertilioninae with special reference to Tylonycteris

As shown in Part I, the Vespertilioninae have on the average the lowest encephalization index (EI) of all the Vespertilionid subfamilies available, and the average size indices (Sis) of most of their brain parts are also lowest. There are, however, clear differences between the genera. The highest indices for the total brain and for many brain parts (OBL, DIE, TEL, PAL, SEP, STR, SCH) were found in Myotis, the highest Sis for NEG and MES in Scotophilus, for CER in Lasiurus, for BOL in Rhogeessa, and for HIP in Cbalinolobus. The lowest values for all brain parts except BOL were found in Tylonycteris (for BOL in Glauconycteris). The average EI of the flat-headed bamboo bats Tylonycteris pachypus and T. robustula was 60, i. e., ²/₅ less than that of the non-Tylonycteris Vespertilionids, which, as the reference group, have an average EI of 100. The brain size reduction may well be related to the adaptation to extreme flat-headedness. The amount of reduction in the various brain parts differs: it is strongest (about ¹/₂) in higher but more dispensable brain parts (STR, HIP, NEO) and distinctly lower (about ¹/₄) in structures closely involved in the fundamental vegetative functions (OBL, MES). Genera with conservative skull characteristics may have derivative characteristics of the brains, and vice versa.     

A new species of lesser panda Parailurus (Mammalia,Carnivora) from the Pliocene of Transbaikalia (Russia) and some aspects of ailurine phylogeny

A new species of the lesser panda, Parailurus baikalicus sp. nov., from the Pliocene of Transbaikalia is described. In contrast to the European taxa P. anglicus and P. hungaricus, it retains a primitive occlusal pattern of M¹-M², with a concave buccal outline, small mesostyle on M¹, and undeveloped styles on M². At the same time, the Transbaikalian panda is more advanced than other representatives of Parailurus in the upper molars with a reduced lingual cingulum and an enlarged paraconule, which is partially (M¹) or completely (M²) separated from the protocone. This combination of primitive and advanced characters points to the separation of the Asian branch at the earliest stages of the genus development. The Transbaikalian lesser panda may represent a terminal form of this phylogenetic lineage.     

The giant panda is closer to a bear,judged by α- and β-hemoglobin sequences

Summary Using - and -hemoglobin sequences, we made a maximum likelihood inference as to the phylogenetic relationship among carnivores, including the two pandas, giant and lesser. Molecular phylogenetic studies up to 1985 had consistently indicated that the giant panda is more closely related to the bear than to the lesser panda. In 1986, however, a contradictory tree was constructed, using hemoglobins and so on, in which the two pandas link together (Tagle et al. 1986). In contrast to that tree, our conclusion supports the close relationship between bear and giant panda. The surface impression of a close relationship between the two pandas drawn from pairwise amino acid differences is explained by a rapid rate of hemoglobin evolution in the bear compared to that in the two pandas.Offprint requests to: T. Hashimoto     

大熊猫子宫钙调素的分离纯化和性质的研究

以大熊猫子宫为材料分离纯化了钙调素(Calmodulin,CaM),经SDS-PAGE,PAGE和等电聚焦电泳鉴定,表现均一。分子量为18800道尔顿,等电点为3.6。该蛋白质分子的N-末端为封闭的。大熊猫子宫钙调素具有其它来源钙调素所特有的一些性质。对环核苷酸磷酸二酯酶有明显的激活作用,还发现对超氧化物歧化酶也有一定的激活作用。电泳行为受Ca~(2+)影响而出现特征性电泳改变,在含有Ca~(2+)的SDS凝胶电泳中,电泳速度比EGTA存在对略快,在PAGE中,有Ca~(2+)比无Ca~(2+)对电泳速度略慢。大熊猫子宫钙调素的氨基酸组成中,Phe/Tyr为8:2,可观察到钙调素特征性紫外吸收光谱。     

犬瘟热病毒小熊猫株反向遗传系统的构建及其鉴定

以驯化致弱的犬瘟热病毒小熊猫株(Canine distemper virus,CDV)为模板,构建犬痘热病毒感染性cDNA克隆.对其全基因组序列测定后,用RT-PCR的方法获得组成全长基因的7个片段,通过酶切、拼接将7段CDVcDNA序列插入到真核表达载体pCI的MCS上,构建犬瘟热病毒小熊猫株的全长cDNA质粒(pCI-CDV-LP),同时分别克隆CDV小熊猫株N、P、L蛋白ORF构建三个辅助质粒.酶切鉴定和序列测定表明,pCI载体中插入的核酶及CDV cDNA序列正确无误,使用转染试剂Lipofectamine TM 2000将全长质粒和三个辅助质粒共转染中国仓鼠肾细胞(BSR),经RT-PCR、间接免疫荧光和病毒感染VERO-SLAM细胞试验鉴定,成功拯救出CDV小熊猫株,显示CDV小熊猫株反向遗传系统构建完成,为犬瘟热病毒致病机理及免疫研究奠定基础.     

四川小相岭山系大熊猫种群及栖息地调查

小相岭山系是现存大熊猫种群数量最少的山系之一。根据全国第3次大熊猫及其栖息地调查结果,小相岭山系大熊猫栖息地分布在石棉、冕宁和九龙三县,栖息地总面积802.04 km²,大熊猫种群数量有32只。大熊猫在3个位于小相岭山系的自然保护区内种群数量和栖息地面积分别为:四川冶勒自然保护区9只,栖息地面积168.01 km²;四川栗子坪自然保护区14只,栖息地面积306.38 km²;四川贡嘎山自然保护区1只,栖息地面积15.19 km²。在3个保护区大熊猫栖息地总面积为489.58 km²,占各山系大熊猫栖息地总面积的61.05%;有大熊猫24只,占大熊猫种群数量的75.0%。小相岭山系大熊猫meta种群栖息地片段化比较严重,它由2个种群和2个孤立分布点组成。南北方向从成都至昆明的108国道以东的种群A有大熊猫13只,栖息地面积263.54 km², 完整性较好,大熊猫分布比较集中。108国道以西的种群B有大熊猫19只,栖息地面积为538.50 km²,栖息地破碎。该山系大熊猫数量少,栖息地片段化严重,需加强保护。
     

Large brains buffer energetic effects of seasonal habitats in catarrhine primates

Ecological factors have been shown to be important for brain size evolution. In this comparative study among catarrhine primates, we examine two different ways in which seasonality may be related to brain size. First, seasonality may impose energetic constraints on the brain because it forces animals to deal with periods of food scarcity (Expensive Brain hypothesis). Second, seasonality may act as a selective pressure to increase brain size, as behavioral flexibility helps to overcome periods of food scarcity (Cognitive Buffer hypothesis). Controlling for phylogeny, we found a strong negative relationship between brain size (relative to body mass) and the degree of experienced seasonality, as estimated by the variation in net energy intake. However, we also found a significant positive relationship between relative brain size and the effect of so-called cognitive buffering, proxied by the difference between environmental seasonality and the seasonality in net energy intake actually experienced by the animals. These results show that both energetic constraints of seasonal habitats as well as cognitive buffering affect brain size evolution, leaving environmental seasonality uncorrelated to brain size. With this study we show the importance of simultaneously considering both costs and benefits in models of brain size evolution.