基于高通量测序技术分析四川两个奶牛场乳汁的菌群差异

【目的】本试验测定了两个奶牛场健康乳汁和乳房炎乳汁中微生物菌群的变化,以揭示不同奶牛场之乳汁菌群的异同,评估其对乳汁代谢的影响是否相同。【方法】采用16S rRNA高通量测序技术,分别测定两个奶牛场6头健康奶牛和6头乳房炎奶牛乳汁中微生物16S rRNA V4区序列,并对菌群群落结构和多样性进行比较,分析场内及场间的乳汁菌群差异。【结果】四组乳汁样本共获得4013234条原始序列,经过滤后获得2887024条优化序列。Alpha多样性Chao指数、Ace指数、Shannon指数、Simpson指数差异均不显著(P0.05);Beta多样性四组样本均分别聚类;在场1和场2中,引起奶牛乳房炎的优势菌属分别是克雷伯氏菌属和埃希氏菌属;在2个奶牛场的健康乳汁中,场2的埃希氏菌属、葡萄球菌属的丰度显著高于场1;在2个奶牛场的乳房炎乳汁中,场2的埃希氏菌属、乳球菌属的丰度显著高于场1;2个奶牛场健康乳汁中的嗜冷菌总丰度分别为31.87%和38.72%;关联分析及功能预测分析表明,2个奶牛场健康乳汁与乳房炎乳汁优势物种之间的关系差异较大;场1无论是Level 1还是Level 2水平,均发现显著性差异的代谢通路,而场2均未发现显著性差异的代谢通路。【结论】本试验研究了两个奶牛场健康乳汁和乳房炎乳汁微生物菌群之间的异同,为两个奶牛场在乳房炎的预防工作以及原料奶在冷链运输过程中质量控制提供理论依据。     

Prevalence of <Emphasis Type="Italic">Coxiella burnetii</Emphasis> antibodies in Danish dairy herds

During recent years in Denmark higher rates of antibodies to Coxiella burnetii have been detected in animals and humans than previously reported. A study based on bulk tank milk samples from 100 randomly selected dairy herds was performed to estimate the prevalence and geographical distribution of antibody positive dairy herds. Using the CHEKIT Q-Fever Antibody ELISA Test Kit (IDEXX), the study demonstrated a prevalence of 59% antibody positive herds, 11% antibody intermediate herds and 30% antibody negative herds based on the instructions provided by the manufacturer. The geographical distribution does not indicate a relationship between the regional density of dairy farms and the prevalence of antibody positive dairy farms. The result supports the hypothesis of an increase in the prevalence of positive dairy herds compared to previous years.     

Stomoxys calcitrans,mechanical vector of virulent Besnoitia besnoiti from chronically infected cattle to susceptible rabbit

Cattle besnoitiosis caused by Besnoitia besnoiti (Eucoccidiorida: Sarcocystidae) is a re‐emerging disease in Europe. Its mechanical transmission by biting flies has not been investigated since the 1960s. The aim of this study was to re‐examine the ability of Stomoxys calcitrans (Diptera: Muscidae) to transmit virulent B. besnoiti bradyzoites from chronically infected cows to susceptible rabbits. Three batches of 300 stable flies were allowed to take an interrupted bloodmeal on chronically infected cows, followed by an immediate bloodmeal on three rabbits (Group B). A control group of rabbits and a group exposed to the bites of non‐infected S. calcitrans were included in the study. Blood quantitative polymerase chain reaction (qPCR) analyses, and clinical, serological and haematological surveys were performed in the three groups over 152 days until the rabbits were killed. Quantitative PCR analyses and histological examinations were performed in 24 tissue samples per rabbit. Only one rabbit in Group B exhibited clinical signs of the acute phase of besnoitiosis (hyperthermia, weight loss, regenerative anaemia and transient positive qPCR in blood) and was seroconverted. Parasite DNA was detected in four tissue samples from this rabbit, but no cysts were observed on histological examination. These findings indicate that S. calcitrans may act as a mechanical vector of B. besnoiti more efficiently than was previously considered.     

Drivers of hybridization in a 66-generation record of Colias butterflies

Hybridization significantly affects the ecology and evolution of numerous plant and animal lineages. Most studies have focused on endogenous drivers of hybridization and neglected variation in exogenous factors, such as seasonal weather patterns. In this study, we take advantage of a unique dataset consisting of records of hybridization between the butterflies Colias eurytheme and C. eriphyle (Pieridae) for 66 generations (22 years) to investigate the importance of seasonal weather on the production and survival of hybrid offspring. Important seasonal weather variables for each parental species and hybrid offspring were determined using model averaging, and these weather variables, along with butterfly abundances, were analyzed using path analysis. The most important drivers of hybridization were the abundance of C. eriphyle, summer minimum temperature, and spring maximum temperature. In contrast, the abundance of C. eurytheme and weather variables prior to the current flight season were relatively unimportant for variation in hybrid abundance. Parental abundances were mostly driven by weather variables prior to the flight season possibly because these variables affect host plant quality. Our results suggest that exogenous, climatic factors can influence hybridization in natural systems, and that these factors can act both directly on hybrid abundance and indirectly through the population dynamics of parental species.     

Activity of pupal parasitoids of the stable fly Stomoxys calcitrans and prevalence of entomopathogenic fungi in the stable fly and the house fly Musca domestica in Denmark

A survey was conducted on confined dairy cattle farms and a pig farm from May–October in 1999 to determine the activity and relative abundance of pupal parasitoids and the prevalence of entomopathogenic fungi in populations of the haematophagous stable fly, Stomoxys calcitrans (Diptera: Muscidae), in Denmark. Four species of pteromalids were found with Spalangia cameroni as the predominant. The other parasitoids were S. nigripes, S. nigra and Phygadeuon fumator (Ichneumonidae). Peak activity of the parasitoids was observed to be late in the summer and the beginning of autumn (August–September) when approximately 10% of the collected stable fly pupae were parasitised. Adult stable flies were infected with four species of entomopathogenic fungi: Entomophthora muscae, E. schizophorae, Beauveria bassiana and Verticillium lecanii. All fungi occurred in low percentages (max. 4%) and remained at this level throughout the sampling period. Likewise, adult house flies were infected with B. bassiana and V. lecanii,but Metarhizium anisopliae, Paecilomyces fumosoroseus and V. fusisporum were also recorded. The overall hyphomycete prevalence in house flies was 0.3%, and single species rarely exceeded 0.1%. The prevalence remained low in spite of increasing house fly numbers in August–September.     

Plant—herbivore interactions in streams near Mount St Helens

1. In four separate field experiments near Mount St Helens (Washington, U.S.A.) during 1986, the grazing effects of two large benthic herbivores, tadpoles of the tailed frog Ascaphus truei and larvae of the caddisfly Dicosmoecus gilvipes, were investigated using streamside channels and in-stream manipulations. In the experimental channels, abundances of periphyton and small benthic invertebrates declined significantly with increasing density of these larger herbivores. 2. In eleven small, high-gradient streams affected to varying degrees by the May 1980 eruption, in-stream platforms were used to reduce grazing by A, truei tadpoles on tile substrates. Single platforms erected in each tributary and compared to grazed controls revealed only minor grazing effects, and no significant differences among streams varying in disturbance intensity (and, consequently, tadpole density). However, results probably were confounded by high variability among streams in factors other than tadpole abundance. 3. Grazing effects were further examined in two unshaded streams with different tadpole densities, using five platforms per stream. In the stream with five tadpoles m^?2, grazing reduced periphyton biomass by 98% and chlorophyll a by 82%. In the stream lacking tadpoles, no significant grazing effects were revealed. Low algal abundance on both platforms and controls, and high invertebrate density in that stream (c. 30000m^?2) suggests that grazing by small, vagile invertebrates was approximately equivalent to that of tadpoles. 4. The influence of large benthic herbivores on algal and invertebrate communities in streams of Mount St Helens can be important, but reponses vary spatially in relation to stream disturbance history, local environmental factors, and herbivore distributional patterns and abundance.     

Does weather affect biting fly abundance in avian nests?

Environmental factors may strongly affect avian‐biting fly interactions in different ways because insects are heterothermic organisms that depend greatly on environmental variables to activate their metabolism and behaviour. We studied the effects of weather on both blackfly (Simuliidae) and biting midge Culicoides (Ceratopogonidae) abundance in nests of three passerine species: blue tits Cyanistes caeruleus, great tits Parus major and pied flycatchers Ficedula hypoleuca, breeding in the same area. We controlled for different host‐related factors (hatching date, brood size and host species). Blackfly abundance was negatively related to minimum temperature. In addition, blackfly and biting midge abundances were negatively affected by wind speed measured at 07.00 h, but blackfly abundance was positively associated to wind speed at 18.00 h. We found higher blackfly and biting midge abundances in nests with larger broods breeding later in the season, and significantly higher biting midge abundance in pied flycatcher nests as compared to tit nests. These results represent, to our knowledge, the first report of both environmental and host‐related effects on haematophagous fly abundance in the nests of wild hole‐nesting birds.     

不同放牧强度下土壤氨氧化和反硝化微生物的变化特征

土壤硝化及反硝化功能微生物在氮素可利用性、硝酸盐淋溶和氧化亚氮温室气体排放等方面起着关键作用,在指示不同放牧强度对生态系统的影响及预测草地生态系统退化状况等方面具有重要意义。以内蒙古干旱半干旱草原不同放牧强度(轻度、中度和重度)的长期试验样地为对象,应用定量PCR和限制性末端片段长度多态性(Terminal restriction fragment length polymorphism,T-RFLP)的方法,研究土壤氨氧化古菌(ammonia-oxidizing archaea,AOA)、氨氧化细菌(ammonia-oxidizing bacteria,AOB)和反硝化细菌的丰度、群落结构和多样性对不同放牧强度的响应。结果表明,土壤p H和铵态氮含量分别在7.90—8.18和6.37—35.92 mg/kg之间,中度放牧处理显著增高了土壤pH(P=0.03),而铵态氮含量在重度放牧处理中最高(P=0.02)。不同放牧强度下土壤异养呼吸相比未放牧处理均显著降低(P=0.02)。土壤AOA-amoA和AOB-amoA基因丰度范围分别为每克干土(4.94—7.60)×10~9个拷贝数和(0.68—3.75)×10~6个拷贝数,放牧处理对AOA-amoA基因丰度无显著影响,中度放牧处理显著降低了AOB-amoA基因丰度(P=0.04);反硝化微生物nosZ基因丰度随在轻度放牧处理中最低(P=0.03)。土壤铵态氮含量是影响AOA-amoA和AOB-amoA基因丰度的主要因子,而nosZ基因丰度主要受反硝化底物含量及土壤通气状况的影响。冗余分析表明由放牧所引起的可利用性氮含量的变化是导致氨氧化和反硝化微生物群落结构显著变化的主要因素。     

Effect of grazing on the cow welfare of dairy herds evaluated by a multidimensional welfare index

Structural development in the prime sector has led to increasing herd sizes and new barn systems, followed by less summer grazing for dairy cows in Denmark. Effects of grazing on single welfare measures in dairy cows – for example, the presence of integument alterations or mortality – have been studied under different conditions. However, the effect of grazing on welfare, conceptualised as the multidimensional physical and mental state of the animal, has not yet been studied in contemporary cubicle loose-housing systems. The aim of our study was to investigate, based on a Welfare Quality® inspired multidimensional dairy cow welfare assessment protocol, the within-herd effect of summer grazing compared with winter barn housing in Danish dairy herds with cubicle free-stall systems for the lactating cows. Our hypothesis was that cow welfare in dairy herds was better during summer grazing than during full-time winter housing. Furthermore, we expected improved welfare with an increase in daily summer grazing hours. In total, 41 herds have been visited once in the winter and once in the summer of 2010 to assess their welfare status with 17 different animal- and resource-based welfare measures. A panel of 20 experts on cattle welfare and husbandry evaluated the relative weight of the 17 welfare measures in a multidimensional assessment scheme. They estimated exact weights for a priori constituted severe compared with moderate scores of welfare impairment concerning each measure, as well as relevance of the measures in relation to each other. A welfare index (WI; possible range 0 to 5400) was calculated for each herd and season with a higher index indicating poorer welfare. The within-herd comparison of summer grazing v. winter housing considered all the 17 measures. The mean WI in summer was significantly lower (better) than in winter (mean 2926 v. 3330; paired t-test P = 0.0001) based on a better state of the integument, claw conformation and better access to water and food. Body condition and faeces consistence were worse in summer. Many daily grazing hours (range average above 3 to 9 h) turned out to be more beneficial than few daily grazing hours (range average above 9 to 21 h) for the welfare of the dairy herds. In conclusion, this study reports a positive within-herd effect of summer grazing on dairy cow welfare, where many daily grazing hours were more beneficial than few daily grazing hours.     

Effect of entomopathogenic fungi upon adults of Stomoxys calcitrans and Musca domestica (Diptera: Muscidae)

The pathogenicity and virulence of 10 isolates of entomopathogenic fungi from the soil of lodging pens of dairy production units in Aguascalientes, Mexico, on adults of Stomoxys calcitrans and Musca domestica were determined. All isolates were pathogenic when exposed by aspersion to a concentration of 1×10⁸ conidia/ml, causing between 20.3 and 91.7% mortality in S. calcitrans and between 31 and 91.7% in M. domestica at 7 days post-exposure; in S. calcitrans isolates of Beauveria bassiana (Bb114) and Metarhizium anisopliae (Ma135), sensu lato, were the most noteworthy as mortality reached above 90% with an LC₅₀ of 3.5×10⁵ conidia/ml for Bb114, while for Ma135 reached 1.6×10⁴ conidia/ml. In M. domestica Ma134 and Ma135 showed mortality above 90% with an LC₅₀ of 4.3×10⁴ and 1.4×10⁵ conidia/ml, respectively.     

Response of macroinvertebrates to warming,nutrient addition and predation in large-scale mesocosm tanks

There is increasing concern about the effect of climate change on aquatic systems. We examined changes in macroinvertebrate communities caused by increased temperature (3°C above ambient during summer only and continuous 3°C above ambient all year round), influences of fish (Gasterosteus aculeatus L.) and addition of nutrients (nitrogen and phosphorus) in 48 large-scale (3000 l) tanks over a 2 year period. While numbers of Isopoda, Chaoborus, Corixidae, Ephemeroptera, Notonectidae and Odonata were reduced by the presence of fish, nutrient addition caused isopods, corixids, mayflies and odonates to increase in abundance. Impacts of temperature increase were surprisingly low, with only gastropods increasing in heated tanks, suggesting that, overall abundances of most macroinvertebrate taxa will not be severely affected by the predicted temperature rise. To determine if taxa were sampled representatively during the experiment, net sweep samples taken towards the end of the experiment were compared with final macroinvertebrate abundances when the complete contents of each tank were harvested. We found that net sweeping is an appropriate semi-quantitative method for most taxa in mesocosm tanks. However, mites, coleopteran adults and larvae, dipterans and Chaoborus were not adequately sampled. This might explain why we could not detect any treatment effects of temperature, fish or nutrients on mites, coleopterans and dipterans and calls for different sampling techniques for these taxa, especially in ponds with vegetation stands.     

Dispersal capacity of Haematopota spp. and Stomoxys calcitrans using a mark–release–recapture approach in Belgium

The dispersion potential of mechanical vectors is an important factor in the dissemination of pathogens. A mark–release–recapture experiment was implemented using two groups (unfed and partially fed) of the Tabanidae (Diptera) (Haematopota spp.) and biting Muscidae (Diptera) (Stomoxys calcitrans) most frequently collected in Belgium in order to evaluate their dispersion potential. In total, 2104 specimens of Haematopota spp. were collected directly from horses and 5396 S. calcitrans were collected in a cattle farm using hand‐nets. Some of these insects were partially fed in vitro and all were subsequently coloured. Overall, 67 specimens of S. calcitrans (1.2%) and 17 of Haematopota spp. (0.8%) were recaptured directly on horses. Stomoxys calcitrans flew maximum distances of 150 m and 300 m when partially fed and unfed, respectively. Haematopota spp. travelled maximum distances of 100 m and 200 m when partially fed and unfed, respectively. Segregation measures seem essential in order to reduce the risk for pathogen transmission. A distance of 150 m appears to be the minimum required for segregation to avoid the risk for mechanical transmission, but in areas of higher vector density, this should probably be increased.     

A novel method for quantifying overdispersion in count data and its application to farmland birds

The statistical modelling of count data permeates the discipline of ecology. Such data often exhibit overdispersion compared with a standard Poisson distribution, so that the variance of the counts is greater than that of the mean. Whereas modelling to reveal the effects of explanatory variables on the mean is commonplace, overdispersion is generally regarded as a nuisance parameter to be accounted for and subsequently ignored. Instead, we propose a method that models the overdispersion as a biologically interesting property of a data set and show how novel inference is provided as a result. We adapted the double hierarchical generalized linear model approach to create an easily extendible model structure that quantifies the influence of explanatory variables on the overdispersion of count data, and apply it to farmland birds. These data were from a study within Irish agricultural ecosystems, in which total bird species abundance and the abundance of farmland indicator species were compared on dairy and non‐dairy farms in the winter and breeding seasons. In general, overdispersion in bird counts was greater on dairy farms than on non‐dairy farms, and for total bird numbers, overdispersion was greatest on dairy farms in winter. Our code is fitted using the Bayesian package Rstan, and we make all code and data available in a GitHub repository. Within a Bayesian framework, this approach facilitates a meaningful quantification of the effects of categorical explanatory variables on any response variable with a tendency to overdispersion that has a meaningful biological or ecological explanation.     

Spatio‐temporal variation of biting flies,Stomoxys spp. (Diptera: Muscidae), along a man‐made disturbance gradient,from primary forest to the city of Makokou (North‐East,Gabon)

Understanding the pattern of abundance of vector populations is important to control the potential of transmission of associated pathogens. The pattern of abundance of Stomoxys Geoffroy, an ubiquitous blood‐sucking fly, is poorly known in tropical Africa. In this study, we investigated the spatio‐temporal pattern of abundance of the Stomoxys genus along a gradient of man‐made disturbance in north‐eastern Gabon. Three sites (one in primary forest, one in secondary forest and one in a man‐made environment) were monitored during 13 months using Vavoua traps. Seven species and subspecies were found to live in sympatry, but with distinct patterns of abundance with respect to space and time. The most abundant species was Stomoxys transvittatus Villeneuve, whereas the rarest species was S. xanthomelas Roubaud. Stomoxys calcitrans Linné was preferentially found in man‐made environments, whereas S. xanthomelas was preferentially found in primary forest. Stomoxys abundance was the greatest in secondary forest, then in man‐made environments and finally in primary forest. A seasonal variation in Stomoxys abundance was also found. In conclusion, forest degradation and deforestation are likely both to favour the concentration of populations of Stomoxys, and to change the specific composition of the Stomoxys community.     

Seasonal incidence and ecology of the tick Ixodes ricinus (Acari: Ixodidae) on grazing pastures in Western France

A longitudinal survey was carried out during a 2 year period in Western France to assess the infestation level of grazing pastures byIxodes ricinus ticks. Four farms were visited once a month and each of the grazing pastures was sampled in the centre and at the border using the blanket dragging method. A total of 3562I. ricinus (34 adults, 900 nymphs and 2628 larvae) were collected and the infestation was significantly higher during the first year (p<0.0001). The infestation level byI. ricinus varied between grazing pastures and farms. Grazing pastures in the vicinity of forest were more infested than the others, all through the study. The seasonal distribution of ticks showed peaks, with low fluctuations between farms, years and stages. Tick abundance could not be related to vegetation, but only to the vicinity of woods.     

Incidence of and risks associated with <Emphasis Type="Italic">Giardia</Emphasis> infections in herds on dairy farms in the New York City Watershed

Background  

The primary aims of this study were to determine the incidence of Giardia infections in dairy herds on farms in the New York City Watershed region and to evaluate risk factors associated with infections. Because co-infections of Giardia and Cryptosporidium spp. are common in this population, we also evaluated the effect of herd infection status on Giardia infections.     

Survey of Shiga toxigenic Escherichia coli O157 and drug-resistant coliform bacteria from in-line milk filters on dairy farms in the Czech Republic

Aims: To determine the occurrence of Shiga toxin‐producing Escherichia coli (STEC) O157 and coliform bacteria isolates resistant to antimicrobial agents in dairy herds by examining milk filters and to analyse the influence of management factors and antibiotic use on antimicrobial resistance. Methods and Results: A total of 192 in‐line milk filters were sampled on 192 dairy farms in the Czech Republic. Information on feeding, husbandry, production, and antibiotic therapy were obtained by questionnaire. The milk filters were cultured for STEC O157 and coliform bacteria. All recovered isolates were examined for antimicrobial susceptibility and presence of antimicrobial‐resistance genes. STEC O157 was detected in four (2%) of the filters. Resistant nonpathogenic E. coli and coliform bacteria isolates with specific genes were detected in 44 (23%) of the filters. Conclusions: The study demonstrated a high prevalence of resistant coliform bacteria in milk filters obtained on Czech dairy farms. Significance and Impact of the Study: The occurrence of resistant coliform bacteria in milk filters was significantly higher among isolates from farms where antibiotic therapy against mastitis was employed during the dry period (P < 0·05).     

Can pre-collected register data be used to identify dairy herds with good cattle welfare?

Background

Pre-recorded register data from dairy herds are available in almost all Nordic countries. These databases can be used for research purposes, and one of the research areas is animal welfare. The aim of this study was to investigate if pre-recorded register data could be used to identify herds with good welfare, and to investigate if a combination of register data sets could be used to be able to more correctly distinguish between herds with good welfare and herds with welfare deficiencies.

Methods

As a first step, nine animal-based measurements on calves, young stock and cows in 55 randomly selected herds were performed on-farm as the basis for a classification of welfare at the herd level. The definition for being a case herd with “good welfare” was no score lying among the 10% worst in any of the nine welfare measurements. Twenty-eight of the 55 herds were cases according to this definition. As a second step, 65 potential welfare indicators, based on register data in a national dairy database, were identified by expert opinion. In the final step, the extent to which the suggested welfare indicators predicted farms’ as having good welfare according to the stated definition was assessed. Moreover, the effect of combining in sequence a previously developed model that identified herds with poor welfare with the present model identifying herds with good welfare was investigated.

Results

The final set of welfare indicators used to identify herds with good animal welfare included two fertility measures, cow mortality, stillbirth rate, mastitis incidence and incidence of feed-related diseases (including gastrointestinal disturbances but excluding paralyses and cramps). This set had a test sensitivity of correctly classifying herds with no score lying among the 10% worst of the nine welfare measurements of 96 %. However, the specificity of the test was only 56% indicating difficulties for the test to correctly classifying herds with one or more scores lying among the 10% worst. Combining the previously developed model with the present model, improved the welfare classification.

Conclusions

This study shows that pre-collected register data may be used to give approval to dairy farms with “good welfare” and that combining different sets of register data can improve the classification of herd welfare.

     

The effects of non-crop habitat on spotted wing drosophila (Drosophila suzukii) abundance in fruit systems: A meta-analysis

1. Drosophila suzukii (SWD) poses a threat to soft and stone fruit globally. SWD inhabits non-crop areas adjacent to farms from where it moves into crops to cause damage. Effective IPM control strategies, considering both the crop and non-crop area, are needed to control this economically important pest.
2. We conducted a meta-analysis to quantify the impacts of different non-crop habitats around fruit farms on SWD populations, comparing abundance of SWD trapped in crop and non-crop habitats.
3. Overall, SWD abundance was greater in non-crop habitats than in cropped areas and this difference was greatest in farms adjacent to woodland, or field margins containing known SWD host plants.
4. The difference in SWD abundance between crop and non-crop habitats was not affected by crop type but was greatest in the winter months and in conventional compared to organic farms, indicating conventional approaches can reduce relative SWD abundance.
5. Drosophila suzukii overwinter in non-crop habitats which provide refuge outside the cropping season. However, certain habitats support greater relative abundance of SWD than others and this is also affected by farm management. We discuss what these findings mean for effective control of SWD.

     

Diel patterns of grazing by pigmented nanoflagellates on <Emphasis Type="Italic">Synechococcus</Emphasis> spp. in the coastal ecosystem of subtropical western Pacific

Natural populations of planktonic Synechococcus spp. exhibit diel variations in abundance and frequency of dividing cells (FDC) during the warm seasons (>25°C) in coastal water of the western subtropical Pacific ocean. We hypothesized that differences in grazing rates during the day/dark cycle were a major cause of the observed diel variations in Synechococcus spp. abundance. We used fluorescently labeled particles (FLP) as tracers of feeding on Synechococcus spp. in June and August 2007. Our results showed that FDC of Synechococcus spp. were highest at dusk (50%) and lowest (<10%) between midnight and early morning. Synechococcus spp. had three abundance phases, accrual (I), peak (II), and diminished (III). Moreover, FDC values gradually increased in phase I, declined to the lowest values during phase II, and remained at low levels throughout phase III. Our results strongly indicated that pigmented nanoflagellate (PNF) grazing was the underlying biological factor regulating diel variations in Synechococcus spp. abundance. And, the rate of PNF ingestion peaked during the night on smaller non-dividing cells following a peak of Synechococcus spp. abundance in phase II. These findings provide evidence that diel variations in ingestion rates are affected by non-dividing cells of Synechococcus spp. and imply that the impacts of PNF grazing on Synechococcus spp. is based on food selectivity by size.