The Palearctic blackfly Simulium equinum (Diptera: Simuliidae) as a biting pest of captive nyala antelopes (Tragelaphus angasii)

Blackflies (Diptera: Simuliidae) are cosmopolitan nuisance pests of great economic importance as well as vectors of many pathogens. After reports of massive blackfly biting of captive nyala antelopes in the Vienna Zoo, Austria, this study aimed to identify the species causing multiple skin lesions on the antelope hosts. The Palearctic species Simulium equinum, belonging to the medically and veterinary important Wilhelmia subgenus, was identified as the most likely causative agent. Barcoding and maximum likelihood analysis supported morphological species identification and highlighted the complex phylogeny of the subgenus Wilhelmia. Our study gives first evidence of the multi-host feeding blackfly S. equinum in the Vienna Zoo, thereby raising the question whether other hosts could also be bitten on a regular basis. The preliminary results urge for further analysis of blackfly breeding sites as well as the clarification of the host spectrum to assess the medical and veterinary importance of blackflies in the Zoo.     

Pest occurrence of Aedes rossicus close to the Arctic Circle in northern Sweden

Major nuisance species are found among the floodwater mosquitoes and snow‐pool mosquitoes, with the former being the main reason for mosquito control in most areas. Nuisance species vary with the area, and previous reports from northern areas conclude that the nuisance is most often caused by snow‐pool mosquitoes. We investigated the mosquito fauna and abundances of host‐seeking females using CDC traps baited with carbon dioxide, in Övertorneå city near the Arctic Circle in northern Sweden, after earlier complaints about massive mosquito nuisance. The abundance of host‐seeking female mosquitoes was high in 2014, with a maximum of ～15,400 individuals per CDC trap night, of which 89% was the floodwater mosquito Aedes rossicus. Surprisingly, the main nuisance species was a floodwater mosquito, occurring at the northernmost location it has ever been recorded in Sweden. Our report is probably the first documentation of such large numbers of Aedes rossicus in any locality and probably the first documentation of a severe floodwater mosquito nuisance near the Arctic Circle. Given the historical data on river discharge in the area, the nuisance is recurrent. We conclude that in northern localities, as well as in more southern localities, production of floodwater mosquitoes is a natural component of the floodplain fauna of rivers with a fluctuating water flow regime. Also, the floodwater mosquitoes Aedes sticticus and Aedes vexans were found north of their formerly known distribution in Sweden.     

Seasonal and spatial variation in the diet of brown trout (Salmo trutta L.) in the subarctic River Laxá, north-east Iceland

This study examines seasonal and spatial patterns in the diet composition, stomach fullness and condition of a landlocked population of brown trout (2.5–61.3 cm) in the lake-fed River Laxá in NE-Iceland. The stomach contents consisted predominantly of benthic invertebrates, such as blackfly larvae Simulium vittatum (58%), chironomids (24%) and the freshwater snail Radix peregra (7%). The seasonal and spatial patterns of S. vittatum in the stomach contents were consistent with published studies on the life cycle and production of S. vittatum in the River Laxá. Close to the Lake Myvatn outlet (0–16 km), S. vittatum constituted 63% of the stomach content volume, and exhibited two peaks (i.e., generations) in its seasonal contribution to the stomach contents, whereas further downstream (16–35 km) S. vittatum constituted 45% of the volume and showed only clear evidence of one generation. Seasonal fluctuations in S. vittatum availability appear to affect the stomach fullness and the condition factor of the trout, especially close to the lake outlet where the fluctuations are pronounced.     

Attractiveness of synthetic volatile blends of flowering rice panicles to Trigonotylus caelestialium (Kirkaldy) (Heteroptera: Miridae)

The attractiveness of 22 synthetic volatile blends or seven individual chemicals emitted from flowering rice panicles to a rice leaf bug, Trigonotylus caelestialium (Kirkaldy), were investigated with an olfactometer to identify the active compounds responsible for the invasion of the bugs into paddy fields. n‐Decanal attracted only male bugs, whereas β‐caryophyllene attracted only females. β‐Elemene repelled males and methyl benzoate marginally repelled females. The other chemicals did not attract or repel male and female bugs at all. Two‐, 3‐, 4‐ and 5‐component blends of β‐caryophyllene, n‐decanal, n‐tridecene, methyl salicylate and geranyl acetone were attractive to neither females nor males. Two‐component blends comprised of β‐caryophyllene and methyl salicylate, or n‐decanal and methyl salicylate, marginally repelled females. The three‐component blend comprised of β‐caryophyllene, n‐decanal and geranyl acetone marginally repelled females. The five‐component blend comprised of β‐caryophyllene, n‐decanal, n‐tridecene, methyl salicylate and geranyl acetone repelled males. The seven‐component blend comprised of β‐caryophyllene, n‐decanal, n‐tridecene, methyl salicylate, geranyl acetone, methyl benzoate and β‐elemene attracted female bugs and marginally attracted male bugs. Six‐component blends without any one of these seven components were not attractive to the bugs although the six‐component blend without n‐decanal was marginally attractive to females. The six‐component blend without n‐tridecene repelled males. These findings suggest that mixtures of these seven compounds play an important role in the attractiveness of flowering rice panicles to both sexes of the bugs, although the attractiveness of individual compounds differs between sexes.     

Does weather affect biting fly abundance in avian nests?

Environmental factors may strongly affect avian‐biting fly interactions in different ways because insects are heterothermic organisms that depend greatly on environmental variables to activate their metabolism and behaviour. We studied the effects of weather on both blackfly (Simuliidae) and biting midge Culicoides (Ceratopogonidae) abundance in nests of three passerine species: blue tits Cyanistes caeruleus, great tits Parus major and pied flycatchers Ficedula hypoleuca, breeding in the same area. We controlled for different host‐related factors (hatching date, brood size and host species). Blackfly abundance was negatively related to minimum temperature. In addition, blackfly and biting midge abundances were negatively affected by wind speed measured at 07.00 h, but blackfly abundance was positively associated to wind speed at 18.00 h. We found higher blackfly and biting midge abundances in nests with larger broods breeding later in the season, and significantly higher biting midge abundance in pied flycatcher nests as compared to tit nests. These results represent, to our knowledge, the first report of both environmental and host‐related effects on haematophagous fly abundance in the nests of wild hole‐nesting birds.     

Behavioural responses of the vine weevil, Otiorhynchus sulcatus, to semiochemicals from conspecifics, Otiorhynchus salicicola, and host plants

The vine weevil Otiorhynchus sulcatus is a parthenogenetic reproducing species which forages for suitable host plants at night, but is found congregated in dark places during the day. Frass of this weevil species is suspected to contain attractive compounds that are host‐plant related. Using a still‐air olfactometer, we tested adult vine weevils at night for their behavioural response to odours from conspecifics, feeding on a mixture of spindle tree (Euonymus fortunei) and yew (Taxus baccata), and to a sexually reproducing related species (Otiorhynchus salicicola), feeding on a mixture of ivy (Hedera helix) and cherry laurel (Prunus laurocerasus). Their attraction to conspecifics and O. salicicola appeared to be related to frass production. Freshly collected frass from O. sulcatus and from O. salicicola males and females was attractive. Prunus laurocerasus and H. helix have not been observed to be hosts of the vine weevil in the field. However, our tests showed that the vine weevil was attracted to mechanically damaged leaves of both plant species, whereas undamaged leaves were not attractive. Only undamaged young unfolding leaves of H. helix were also attractive. The attraction to odours from mechanically damaged host and non‐host plants suggested the involvement of compounds that are commonly found in many plant species. The involvement of plant compounds and/or aggregation pheromones in attraction to frass of the vine weevil and frass of the related weevil species O. salicicola is discussed.     

Spatial feeding preferences of ornithophilic mosquitoes,blackflies and biting midges

The section of habitat used by particular bloodsucking insects when seeking bloodmeals may influence the spectrum of hosts to which they have access and consequently the diseases they transmit. The vertical distribution of ornithophilic bloodsucking Diptera (Culicidae, Simuliidae and Ceratopogonidae) was studied using bird‐baited traps set at both ground and tree canopy levels. In total, 1240 mosquito females of eight species, 1201 biting midge females of 11 species, and 218 blackfly females of two species were captured during 2003–2005. Culex pipiens (L.) (Diptera: Culicidae) was found to prefer ground‐level habitats, whereas Anopheles plumbeus (Stephens) (Diptera: Culicidae), biting midges [Culicoides spp. (Diptera: Ceratopogonidae)] and Eusimulium angustipes (Edwards) (Diptera: Simuliidae) preferred the canopy. The results of this study with regard to Cx. pipiens behaviour differ from those of most previous studies and may indicate different spatial feeding preferences in geographically separate populations. The occurrence of E. angustipes in the canopy is concordant with its role in the transmission of avian trypanosomes. These findings may be important for surveillance programmes focusing on ornithophilic Diptera which transmit various pathogenic agents.     

Molecular identification of bloodmeals and species composition in Culicoides biting midges

Investigations of host preferences in haematophagous insects, including Culicoides biting midges (Diptera: Ceratopogonidae), are critical in order to assess transmission routes of vector‐borne diseases. In this study, we collected and morphologically identified 164 blood‐engorged Culicoides females caught in both light traps and permanent 12‐m high suction traps during 2008–2010 in Sweden. Molecular analysis of the mitochondrial cytochrome c oxidase subunit I (COI) gene in the biting midges was performed to verify species classification, discern phylogenetic relationships and uncover possible cryptic species. Bloodmeal analysis using universal vertebrate cytochrome b primers revealed a clear distinction in host selection between mammalophilic and ornithophilic Culicoides species. Host sequences found matches in horse (n = 59), sheep (n = 39), cattle (n = 26), Eurasian elk (n = 1) and 10 different bird species (n = 18). We identified 15 Culicoides species previously recorded in Scandinavia and four additional species haplotypes that were distinctly different from the described species. All ornithophilic individuals (n = 23) were caught exclusively in the suction traps, as were, interestingly, almost all mammalophilic species (n = 41), indicating that many biting midge species may be able to cover long distances after completing a bloodmeal. These results add new information on the composition of Culicoides species and their host preferences and their potential long‐distance dispersal while blood‐engorged.     

Revealing potential bridge vectors for BTV and SBV: a study on Culicoides blood feeding preferences in natural ecosystems in Spain

Several species of Culicoides (Diptera: Ceratopogonidae) are vectors of pathogens, such as the bluetongue (BTV) and Schmallenberg (SBV) viruses, which cause important diseases in domestic and wild ruminants. As wild ruminants can contribute to overwintering and epizootics of both diseases, knowledge of the host‐feeding behaviour of Culicoides in natural ecosystems is important to better understand their epidemiology. Blood‐engorged Culicoides females trapped in natural areas inhabited by different wild ruminant species were genetically analysed to identify host species. The origin of bloodmeals was identified in 114 females of 14 species of Culicoides. A total of 104 (91.1%) Culicoides fed on mammals and 10 (8.9%) on birds. The most abundant host identified was red deer (66.7%), followed by humans (13%) and fallow deer (6.1%). Eleven of the 14 species of Culicoides fed exclusively on mammalian hosts. Among them, five are mammalophilic species considered to be important BTV and/or SBV vectors. The results of the present study confirm that Culicoides imicola, Culicoides obsoletus, Culicoides scoticus, Culicoides pulicaris and Culicoides punctatus fed on wild ruminants, and therefore support the hypothesis that these species can act as bridge vectors by facilitating the circulation of pathogens between wild and domestic ruminant communities.     

Photosensitization of invertebrates by natural polyacetylenes

Fourteen polyacetylenes or their thiophene derivatives, isolated from species in the Asteraceae were screened for their biological activity to mosquito larvae (Aedes aegypti), blackfly larvae (Simulium vittatum) and adult nematodes (Caenorhabditis elegans). Toxicity of the compounds was found to be enhanced greatly by irradiation with near-UV radiation or natural sunlight. Only wavelengths less than 400 nm were effective in promoting photosensitization. The results are discussed in relation to herbivore-plant interactions.     

Identification of Communal Oviposition Pheromones from the Black Fly Simulium vittatum

The suite of pheromones that promote communal oviposition by Simulium vittatum, a North American black fly species, was identified and characterized using gas chromatography-mass spectrometry, electrophysiological, and behavioral bioassays. Behavioral assays demonstrated that communal oviposition was induced by egg-derived compounds that were active at short range and whose effect was enhanced through direct contact. Three compounds (cis-9-tetradecen-1-ol, 1-pentadecene, and 1-tridecene) were identified in a non-polar solvent extract of freshly deposited S. vittatum eggs that were capable of inducing the oviposition response. Electroantennography demonstrated that two of these three compounds (1-pentadecene and 1-tridecene) actively stimulated antennal neurons. Identification of the oviposition pheromones of this family may be helpful in developing control measures for nuisance black flies and for medically-important species such as Simulium damnosum sensu lato.     

Performance of Sclerodermus brevicornis,a parasitoid of invasive longhorn beetles,when reared on rice moth larvae

Biological control efficiency can be improved by developing effective mass‐rearing systems to produce large numbers of high‐quality parasitoids. This study explored an alternative host for rearing Sclerodermus brevicornis (Kieffer) (Hymenoptera: Bethylidae), a potential biocontrol agent for the suppression of exotic and invasive wood‐boring longhorn beetle (Coleoptera: Cerambycidae) populations in the European agroforestry ecosystems. We tested larvae of the rice moth, Corcyra cephalonica Stainton (Lepidoptera: Pyralidae), as host for the parasitoid. We quantified the probability and timing of host attack and parasitism as well as reproductive success, offspring production, and the characteristics of adult offspring. As S. brevicornis is a quasi‐social species (multiple females, communally produced offspring broods), we also explored the effects of varying the number of females to which individual hosts were presented, with the aim of determining the optimal female‐to‐host ratio. As time to host attack can be a limiting factor in S. brevicornis rearing protocols, we tested the use of adult females of another bethylid species, Goniozus legneri Gordh, to paralyse C. cephalonica larvae prior to presentation. We identified the conditions within our experiment that maximized offspring production per host and offspring production per adult female parasitoid. We found that C. cephalonica is suitable as a factitious host and, as it is considerably more straightforward for laboratory rearing than cerambycid species, it is a good candidate for adoption by future S. brevicornis mass‐rearing and release programmes.     

Field and climate‐based model for predicting the density of host‐seeking nymphal Ixodes scapularis,an important vector of tick‐borne disease agents in the eastern United States

Aim Ixodes scapularis is the most important vector of human tick‐borne pathogens in the United States, which include the agents of Lyme disease, human babesiosis and human anaplasmosis, among others. The density of host‐seeking I. scapularis nymphs is an important component of human risk for acquiring Borrelia burgdorferi, the aetiological agent of Lyme disease. In this study we used climate and field sampling data to generate a predictive map of the density of host‐seeking I. scapularis nymphs that can be used by the public, physicians and public health agencies to assist with the diagnosis and reporting of disease, and to better target disease prevention and control efforts. Location Eastern United States of America. Methods We sampled host‐seeking I. scapularis nymphs in 304 locations uniformly distributed east of the 100th meridian between 2004 and 2006. Between May and September, 1000 m² were drag sampled three to six times per site. We developed a zero‐inflated negative binomial model to predict the density of host‐seeking I. scapularis nymphs based on altitude, interpolated weather station and remotely sensed data. Results Variables that had the strongest relationship with nymphal density were altitude, monthly mean vapour pressure deficit and spatial autocorrelation. Forest fragmentation and soil texture were not predictive. The best‐fit model identified two main foci – the north‐east and upper Midwest – and predicted the presence and absence of I. scapularis nymphs with 82% accuracy, with 89% sensitivity and 82% specificity. Areas of concordance and discordance with previous studies were discussed. Areas with high predicted but low observed densities of host‐seeking nymphs were identified as potential expansion fronts. Main conclusions This model is unique in its extensive and unbiased field sampling effort, allowing for an accurate delineation of the density of host‐seeking I. scapularis nymphs, an important component of human risk of infection for B. burgdorferi and other I. scapularis‐borne pathogens.     

Phenotypic plasticity of the reproductive system of female Leptinotarsa undecimlineata

The effect of a non‐host plant, Solanum myriacanthum, on ovarian dynamics and longevity of Leptinotarsa undecimlineata (Stål) (Coleoptera: Chrysomelidae) was studied under laboratory conditions. Females reared on the natural host, S. lanceolatum, served as controls. Female beetles did not accumulate eggs on the non‐host. After continuous exposure to S. myriacanthum, the production of basal oocytes was diminished and oocytes were reabsorbed. Oocyte size, however, was not affected when compared to females fed with S. lanceolatum. In control females, the first mature eggs appeared at 34 days old. No eggs matured in females fed with the non‐host in the 54‐day duration of our experiment. Continuous exposure to the non‐host resulted in significantly less resorption of reproductive resources than a stress period of 20 days on the non‐host. Egg resorption was completely reversible after the preferred host was re‐offered for another 20 days. Further studies under field conditions will be necessary to understand why this Leptinotarsa species uses only one of two sympatric Solanum species.     

Host plant volatiles responsible for the invasion of Stenotus rubrovittatus (Heteroptera: Miridae) into paddy fields

We investigated the attractiveness of synthetic volatile blends or individual volatiles of flowering rice panicles or flowering Scirpus juncoides spikelets to the sorghum plant bug Stenotus rubrovittatus (Matsumura). None of the individual chemicals tested attracted either sex of the bug. Synthetic volatile blends of flowering rice panicles composed of geranyl acetone, β‐caryophyllene, n‐decanal, methyl salicylate, β‐elemene and n‐tridecene attracted females. The synthetic blend of volatiles was just as attractive as natural flowering rice panicles to females. Other synthetic blends did not attract the bug. We sampled headspace volatiles from flowering S. juncoides spikelets with solid‐phase microextraction and analysed them using gas chromatography–mass spectrometry. The main volatile emitted from S. juncoides was β‐caryophyllene, one of the major volatile components of flowering rice panicles. β‐Elemene was a common volatile found in flowering rice panicles and flowering S. juncoides spikelets. Therefore, we investigated the attractiveness of synthetic blends of flowering rice panicles and S. juncoides spikelets composed of β‐caryophyllene and β‐elemene. The synthetic blend of flowering S. juncoides spikelets significantly attracted males but not females. The synthetic blend of flowering rice panicles composed of β‐caryophyllene and β‐elemene did not attract either sex. These results suggest that β‐caryophyllene and β‐elemene are common active compounds responsible for attractiveness of flowering rice panicles and S. juncoides spikelets although some of the other volatile components act synergistically with these two compounds in natural plant odours.     

Attractants for management of the pine sawyer beetle Monochamus sutor,a potential vector of Bursaphelenchus xylophilus

Monochamus sutor (Linnaeus) (Coleoptera: Cerambycidae) is a secondary wood borer that has been hypothesized as capable of transmitting Bursaphelenchus xylophilus, the causal agent of pine wilt disease (PWD). This fact supposes a risk of spread of PWD over Europe and has created an urgent need for effective tools to detect and monitor both the nematode and the insect species that vectors it. Recent reporting of 2‐undecyloxy‐1‐ethanol as the M. sutor male‐produced aggregation pheromone has opened the possibility of developing an efficient lure for this species. It is known that some European bark beetle pheromone compounds and host volatiles kairomonally attract this species. Besides, smoke volatiles from burnt trees might play a role in M. sutor host location. In this work, field trapping experiments during 3 years in three countries (Spain, Sweden and Austria), aimed to develop an efficient pheromone‐kairomone lure operative for M. sutor management were carried out. Electroantennographic responses by M. sutor to Ips pheromones and to the Pityogenes chalcographus pheromone chalcogran were also studied. GC‐EAG recording showed that M. sutor males and females clearly responded to ipsenol and ipsdienol, and females also responded to 2‐methyl‐3‐buten‐2‐ol. Chalcogran elicited a response to M. sutor female antennae. In field tests, ipsenol was the most attractive kairomone to both sexes of M. sutor, whereas ipsdienol, cis‐verbenol and 2‐methyl‐3‐buten‐2‐ol were attractive and chalcogran was unattractive. When combined with the pheromone, most bark beetle kairomones increased catches of both sexes although chalcogran was completely ineffective. Thus, ipsenol was the strongest individual kairomone for M. sutor and the best single kairomone to be combined with the pheromone. Smoke volatile blends tested in Spain and Austria did not elicit responses, suggesting that these compounds are likely not involved in host finding by this species.     

Malaria infection increases bird attractiveness to uninfected mosquitoes

The epidemiology of vector‐borne pathogens is largely determined by the host‐choice behaviour of their vectors. Here, we investigate whether a Plasmodium infection renders the host more attractive to host‐seeking mosquitoes. For this purpose, we work on a novel experimental system: the avian malaria parasite Plasmodium relictum, and its natural vector, the mosquito Culex pipiens. We provide uninfected mosquitoes with a choice between an uninfected bird and a bird undergoing either an acute or a chronic Plasmodium infection. Mosquito choice is assessed by microsatellite typing of the ingested blood. We show that chronically infected birds attract significantly more vectors than either uninfected or acutely infected birds. Our results suggest that malaria parasites manipulate the behaviour of uninfected vectors to increase their transmission. We discuss the underlying mechanisms driving this behavioural manipulation, as well as the broader implications of these effects for the epidemiology of malaria.     

Aggregation pheromone of the agave weevil, Scyphophorus acupunctatus

The agave weevil, Scyphophorus acupunctatus Gyllenhal (Coleoptera: Curculionidae), is the most important insect pest of wild and cultivated agaves in the world. Combined gas chromatography‐electroantennography (GC‐EAD) analysis of male volatile extracts showed that four peaks elicited antennal responses from males and females. The peaks were identified by GC‐mass spectrometry (GC‐MS) as 2‐methyl‐4‐heptanol (1), 2‐methyl‐4‐octanol (2), 2‐methyl‐4‐heptanone (3), and 2‐methyl‐4‐octanone (4). Electroantennogram (EAG) recordings of both sexes to 0.01‐, 0.1‐, 1‐, and 10‐µg stimulus load of synthetic compounds showed that the dose of the tested compounds and weevil sex significantly influenced the antennal response of S. acupunctatus. However, there was no sexual dimorphism in the antennal responses to the four synthetic compounds evaluated because the EAG profiles revealed no interaction between doses by sex. Antennae of S. acupunctatus were most sensitive to compounds 2 and 4, reaching the threshold at a 0.01‐µg stimulus load. Weevil antennae were less sensitive to compounds 1 and 3, and the threshold response to these compounds was 0.1 µg. Behavioural evaluation of the synthetic compounds showed them to be attractive to both males and females in a Y‐tube olfactometer. Field experiments confirmed the laboratory results, showing that all components, singly or in blends, were attractive to the weevils. In general, traps baited with the quaternary blend of compounds 1–4 captured significantly more weevils than traps baited with males. However, compounds 3 and 4 were sufficient to obtain captures equivalent to those by the quaternary blend. The potential use of the aggregation pheromone in the development of a mass‐trapping programme as a viable pest management alternative for S. acupunctatus is discussed.     

A multi‐locus approach resolves the phylogenetic relationships of the Simulium asakoae and Simulium ceylonicum species groups in Malaysia: evidence for distinct evolutionary lineages

A multi‐locus approach was used to examine the DNA sequences of 10 nominal species of blackfly in the Simulium subgenus Gomphostilbia (Diptera: Simuliidae) in Malaysia. Molecular data were acquired from partial DNA sequences of the mitochondria‐encoded cytochrome c oxidase subunit I (COI), 12S rRNA and 16S rRNA genes, and the nuclear‐encoded 18S rRNA and 28S rRNA genes. No single gene, nor the concatenated gene set, resolved all species or all relationships. However, all morphologically established species were supported by at least one gene. The multi‐locus sequence analysis revealed two distinct evolutionary lineages, conforming to the morphotaxonomically recognized Simulium asakoae and Simulium ceylonicum species groups.     

Congruent population genetic structures and divergence histories in anther‐smut fungi and their host plants Silene italica and the Silene nutans species complex

Study of the congruence of population genetic structure between hosts and pathogens gives important insights into their shared phylogeographical and coevolutionary histories. We studied the population genetic structure of castrating anther‐smut fungi (genus Microbotryum) and of their host plants, the Silene nutans species complex, and the morphologically and genetically closely related Silene italica, which can be found in sympatry. Phylogeographical population genetic structure related to persistence in separate glacial refugia has been recently revealed in the S. nutans plant species complex across Western Europe, identifying several distinct lineages. We genotyped 171 associated plant–pathogen pairs of anther‐smut fungi and their host plant individuals using microsatellite markers and plant chloroplastic single nucleotide polymorphisms. We found clear differentiation between fungal populations parasitizing S. nutans and S. italica plants. The population genetic structure of fungal strains parasitizing the S. nutans plant species complex mirrored the host plant genetic structure, suggesting that the pathogen was isolated in glacial refugia together with its host and/or that it has specialized on the plant genetic lineages. Using random forest approximate Bayesian computation (ABC‐RF), we found that the divergence history of the fungal lineages on S. nutans was congruent with that previously inferred for the host plant and probably occurred with ancient but no recent gene flow. Genome sequences confirmed the genetic structure and the absence of recent gene flow between fungal genetic lineages. Our analyses of individual host–pathogen pairs contribute to a better understanding of co‐evolutionary histories between hosts and pathogens in natural ecosystems, in which such studies remain scarce.