Large tetrapod burrows from the Middle Triassic of Argentina: a behavioural adaptation to seasonal semi‐arid climate?

Krapovickas, V., Mancuso, A.C., Marsicano, C.A., Domnanovich, N.S. & Schultz, C.L. 2013: Large tetrapod burrows from the Middle Triassic of Argentina: a behavioural adaptation to seasonal semi‐arid climate? Lethaia, Vol. 46, pp. 154–169. We report the discovery of large burrow casts in the early Middle Triassic Tarjados Formation, at Talampaya National Park, north‐western Argentina. Facies analysis indicates the burrows are preserved in sandbars deposited by an ephemeral river under semi‐arid and seasonal climatic conditions. The structures are mostly preserved in longitudinal cross‐section and consist of an opening, an inclined tunnel (ramp), and a terminal chamber. The ramp is 8–14 cm in height, up to 130 cm in length and penetrates 49–63 cm bellow the palaeosurface with an inclination of 22°–30°. We studied burrow cast dimensions, overall architectural morphology, surficial marks, and compared them with other large burrows of both invertebrate and vertebrate origin. A tetrapod origin of the burrow casts was established based on: distinctive architecture, and size, which is more than twice the most common size range for large terrestrial invertebrate burrows. Comparison with other Upper Permian and Triassic tetrapod burrows allows us to identify three general morphological groups: (1) simple inclined burrows; (2) helical burrows; and (3) burrow network complexes, representing different behaviours. A study of tetrapod body fossils preserved within other Upper Permian and Triassic burrows shows that the Tarjados structures were most likely produced by non‐mammalian cynodonts. The environmental and climatic context suggests that aridity and seasonality played a fundamental role selecting burrowing behaviour in therapsids and that by the Early–Middle Triassic their burrowing behaviour attained a complexity comparable to modern mammals. □Argentina, behaviour, palaeoclimate, Permo‐Triassic, Tarjados Formation, Tetrapod burrows.     

At what spatial scales does resource selection vary? A case study of koalas in a semi‐arid region

The conservation of any species requires understanding and predicting the distribution of its habitat and resource use, including the effects of scale‐dependent variation in habitat and resource quality. Consequently, testing for resource selection at the appropriate scales is critical. We investigated how the resource selection process varies across scales, using koalas in a semi‐arid landscape of eastern Australia as a case study. We asked: at what scales does tree selection by koalas vary across regions? We tested the importance of the variation of our ecological predictors at the following scales: (i) the site‐scale (a stand of trees representing an individual koala's perception of local habitat); (ii) the landscape‐scale (10 × 10 km area representing a space within which a population of koalas exists); and (iii) a combination of these scales. We used a mixed‐modelling approach to quantify variation in selection of individual trees by koalas among sites and landscapes within a 1600 km² study area. We found that tree species, and tree height, were the most important factors influencing tree selection, and that their effect did not vary across scales. In contrast, preferences for trees of different condition, which is the state of tree canopy health, did vary across landscapes, indicating spatial variation in the selection of trees with respect to tree condition at the landscape‐scale, but not at the site‐scale. We conclude that resource selection processes can depend on the quality of those resources at different scales and their heterogeneous nature across landscapes, highlighting the consequence of scale‐dependent ecological processes. Designing studies that capture the heterogeneity in habitat and resources used by species that have an extensive distribution is an important prerequisite for effective conservation planning and management.     

Can we explain regional abundance and road‐kill patterns with variables derived from local‐scale road‐kill models? Evaluating transferability with the European polecat

Aim We evaluated the transferability of variables previously found to have a significant effect on European polecat Mustela putorius road‐kills at a local scale (i.e. 50 m around location points) when we extrapolate them to a large scale [Universal Transverse Mercator (UTM) 100 km²] in a neighbouring area. Location Andalusia, south Spain. We carried out our study in 821 of the 985 UTM 100 km² cells included in this region. Methods The units of the different variables were adapted to the new scale. We used data from the Spanish Atlas survey to obtain the abundance of the different species and GIS data for the rest of the variables. We controlled the spatial autocorrelation by incorporating spatial filters obtained with Spatial Eigenvector Mapping into multiple regression analyses. We used AIC criteria and the best subset procedure to investigate the relationship between the selected variables and species abundance, and road‐kill occurrence. Results The best subset procedure provided two models that explained 40% of variation in polecat abundance and eleven models that explained around 25% of variation in road‐kills. The main explanatory factor for polecat abundance was the abundance of other carnivores, whereas polecat abundance was the main factor for road‐kills. In both cases, rabbit abundance was the second most important explanatory variable. Main Conclusions Our findings highlight the possibility of partially explaining the abundance and road‐kill patterns at a large scale based on significant variables from local‐scale models. Mitigation measures to reduce polecat fatalities should combine actions at different scales. Routes that cross carnivore hotspots, including those of polecats, and areas with important populations of rabbits, should be avoided during road planning. When these routes are unavoidable, local‐scale mitigation measures must be implemented.     

Plant species loss from European semi‐natural grasslands following nutrient enrichment – is it nitrogen or is it phosphorus?

Aim Although many studies support the prevailing paradigm of nitrogen (N)‐driven biodiversity loss, some have argued that phosphorus (P) may be the main culprit. This questions the generality of the global threat through N enrichment. The major objective here was to quantify the relative importance of soil N and P in explaining patterns of plant species richness, under different levels of N and P limitation. Location North‐western Europe. Methods We collected soil, productivity and plant species data from 132 semi‐natural grasslands located along a gradient of nutrient availability and atmospheric N deposition. We used linear mixed models to investigate the relation between soil nutrients, acidity, limitation and productivity on one side, and indices for plant species richness on the other. Results Mixed models explained between 38 and 50% of the total variation in species numbers, forbs and endangered species. Soil P was significantly negatively related to total species number, forbs and endangered species. Soil N was only significantly negatively related to number of forbs and endangered species. Compared with soil P, the explained variation attributed to soil N was between five‐ and twenty‐fold lower. P‐limited grasslands exhibited higher species richness, numbers of forbs and endangered species. Species richness and number of forbs decreased with lower soil acidity. N deposition was negatively related to the number of forbs and endangered species, as well as to soil acidity. Productivity was weakly positively related to soil P and negatively to species and forb numbers. We found no interaction factors between the explanatory variables. Main conclusions P enrichment can present a greater threat to biodiversity than N enrichment in at least some terrestrial ecosystems. However, as N‐ and P‐driven species loss appeared independent, our results suggest that simultaneously reducing N and P inputs is a prerequisite for maintaining maximum plant diversity.     

Can environmental tolerances explain convergent patterns of distribution in endemic spring snails from opposite sides of the Australian arid zone?

Patterns of distribution are influenced by species environmental requirements and limits, but experimental tests are needed to discern whether correlates of abundance directly affect survival and success. Springs in Australia’s arid interior support a wide diversity of gastropods only found in springs, and these species show dichotomous patterns of distribution. “Amphibious” species are broadly distributed across many springs and microhabitats, and “aquatic” species confined to the deepest pool areas within large springs. This pattern appears to be driven by the interaction between different environmental conditions in different microhabitats and the environmental tolerances of each endemic snail species. Factorial experiments were used to test whether conditions in the environmentally extreme and variable tail area of springs (considering pH, conductivity, temperature and desiccation potential, alone and in synergistic scenarios) elicited lethal or sub-lethal responses in spring snails endemic to springs on opposite sides of the Australian arid zone. All species restricted to spring pools were able to endure 24 h exposed to the average tail conditions, alone and in combination, but most suffered mortalities when subjected to extremes, and mortalities occurred sooner in the most restricted species when elevated pH and conductivity were experienced in combination. Responses of species from different locations are similar, but pattern of distribution in the field were not correlated with tolerance of environmental extremes—with the “amphibious” species from the sub-tropics being far more sensitive than its arid counterpart. These findings suggest that environmental variance within springs can influence patterns of distribution and abundance, particularly when extremes are experienced simultaneously over sustained time periods. But despite similarities in responses across species from these two spring complexes, no simple generalisations linking distribution and tolerance were discernible.     

Smoke on the water: Can riverine fish populations recover following a catastrophic fire‐related sediment slug?

Abstract In early 2003 a series of large, wildfire‐related sediment slugs occurred in streams in the south‐eastern Australian alpine region. Back‐pack and boat‐mounted electrofishing were used to measure changes in riverine fish fauna after one particularly large sediment slug which started in an upland stream and then travelled downstream through 200 km of third and fourth order stream. Twelve impact sites and eight control sites were surveyed where there were previous data on fish populations. The sites were surveyed directly after the sediment slug had passed and then 12, 24 and 36 months after. Immediately after the sediment slug, fish abundances fell by between 95–100% at four impact sites in the upper reaches of the study area, primarily due to the effect of low‐dissolved oxygen levels. Twelve months later fish numbers were still decreased in the upper catchment but showed signs of recovery after 24 months. Further downstream, where water quality was not as severely affected by the sediment slug, the effects on native fishes were less apparent. The circumstances of these events represented a unique opportunity to obtain baseline data regarding the effects of post‐fire disturbances on fish, and their time to recovery. If fire were to occur in catchments where endangered species exist, our results suggest that actions such as translocation may be required to ensure the long‐term survival of threatened species.     

Substitutes for grazing in semi‐natural grasslands – do mowing or mulching represent valuable alternatives to maintain vegetation structure?

Question: Which management treatments are suitable to replace historically applied grazing regimes? How and why does vegetation structure change following changes in management? Location: Semi‐natural calcareous dry grasslands in southwest Germany. Methods: We analysed changes in floristic and functional composition induced by different management treatments (grazing, mowing, mulching, succession) in long‐term experimental sites. First, floristic and functional distances between the initial conditions and the following years were determined. Second, we used RLQ analyses to include data on abiotic conditions, vegetation composition and functional traits in one common analysis. Finally, we applied cluster analyses on RLQ species scores to deduce functional groups. Results: In contrast to the historical management regime of grazing, all alternative management treatments led to changes in floristic and functional composition, depending on their intensity with respect to biomass removal. The distance analyses showed that mulching twice per year and mowing did not lead to strong changes in floristic or functional composition. However, RLQ analysis clearly provided evidence that only the grazed sites are in equilibrium, indicating that vegetation change still goes ahead. Conclusions: The current study clearly shows that RLQ is a powerful tool to elucidate ongoing processes that may remain hidden when separately analysing floristic and functional data. Alternative management treatments are not appropriate to sustain the typical disturbance dynamics of species‐rich semi‐natural grasslands. The less frequent an alternative management treatment is with respect to biomass removal, the less the floristic and functional structure can be maintained.     

Can taxonomic distinctness assess anthropogenic impacts in inland waters? A case study from a Mediterranean river basin

1. It is increasingly recognised that adequate measures of biodiversity should include information on the ‘relatedness’ of species within ecological assemblages, or the phylogenetic levels at which diversity is expressed. Taxonomic distinctness measures provide a series of indices to achieve this, which are independent of sample size. Taxonomic distinctness has been employed widely in marine systems, where it has been suggested that this index can provide a reliable measure of anthropogenic impact. 2. We tested the behaviour of three related taxonomic distinctiveness indices (Average Taxonomic Distinctness, Δ⁺; Variation in Taxonomic Distinctness, Λ⁺; and Total Taxonomic Distinctness, sΔ⁺) in relation to putative levels of anthropogenic impact in inland waters and their potential utility in environmental monitoring, using an extensive data set for aquatic beetles from the south‐east of the Iberian Peninsula. 3. Taxonomic distinctness measures were not able to identify human disturbance effects and there were no clear relationships between these new biodiversity measures and the disturbance level recorded at individual localities. Furthermore, the taxonomic distinctness measures used were apparently less sensitive to the effects of anthropogenic impact than other diversity metrics, such as species richness and rarity. 4. We conclude that taxonomic distinctness indices may not always perform as well as other metrics in the assessment of environmental quality. In addition, taxonomic distinctness measure should be interpreted with caution, as their performance and ability to detect anthropogenic disturbance may depend on the phylogenetic structure of sampled taxa within a region, and their evolutionary and ecological history.     

SNP development from RNA‐seq data in a nonmodel fish: how many individuals are needed for accurate allele frequency prediction?

Single nucleotide polymorphisms (SNPs) are rapidly becoming the marker of choice in population genetics due to a variety of advantages relative to other markers, including higher genomic density, data quality, reproducibility and genotyping efficiency, as well as ease of portability between laboratories. Advances in sequencing technology and methodologies to reduce genomic representation have made the isolation of SNPs feasible for nonmodel organisms. RNA‐seq is one such technique for the discovery of SNPs and development of markers for large‐scale genotyping. Here, we report the development of 192 validated SNP markers for parentage analysis in Tripterygion delaisi (the black‐faced blenny), a small rocky‐shore fish from the Mediterranean Sea. RNA‐seq data for 15 individual samples were used for SNP discovery by applying a series of selection criteria. Genotypes were then collected from 1599 individuals from the same population with the resulting loci. Differences in heterozygosity and allele frequencies were found between the two data sets. Heterozygosity was lower, on average, in the population sample, and the mean difference between the frequencies of particular alleles in the two data sets was 0.135 ± 0.100. We used bootstrap resampling of the sequence data to predict appropriate sample sizes for SNP discovery. As cDNA library production is time‐consuming and expensive, we suggest that using seven individuals for RNA sequencing reduces the probability of discarding highly informative SNP loci, due to lack of observed polymorphism, whereas use of more than 12 samples does not considerably improve prediction of true allele frequencies.     

Early vigour in wheat: Could it lead to more severe terminal drought stress under elevated atmospheric [CO2] and semi‐arid conditions?

Early vigour in wheat is a trait that has received attention for its benefits reducing evaporation from the soil surface early in the season. However, with the growth enhancement common to crops grown under elevated atmospheric CO₂ concentrations (e[CO₂]), there is a risk that too much early growth might deplete soil water and lead to more severe terminal drought stress in environments where production relies on stored soil water content. If this is the case, the incorporation of such a trait in wheat breeding programmes might have unintended negative consequences in the future, especially in dry years. We used selected data from cultivars with proven expression of high and low early vigour from the Australian Grains Free Air CO₂ Enrichment (AGFACE) facility, and complemented this analysis with simulation results from two crop growth models which differ in the modelling of leaf area development and crop water use. Grain yield responses to e[CO₂] were lower in the high early vigour group compared to the low early vigour group, and although these differences were not significant, they were corroborated by simulation model results. However, the simulated lower response with high early vigour lines was not caused by an earlier or greater depletion of soil water under e[CO₂] and the mechanisms responsible appear to be related to an earlier saturation of the radiation intercepted. Whether this is the case in the field needs to be further investigated. In addition, there was some evidence that the timing of the drought stress during crop growth influenced the effect of e[CO₂] regardless of the early vigour trait. There is a need for FACE investigations of the value of traits for drought adaptation to be conducted under more severe drought conditions and variable timing of drought stress, a risky but necessary endeavour.     

Test of an environmental flow release in a British Columbia river: does more water mean more fish?

1. Water managers must make difficult decisions about the allocation of streamflows between out‐of‐channel human uses and environmental flows for aquatic resources. However, the effects environmental flows on stream ecosystems are infrequently evaluated. 2. We used a 13‐year experiment in the regulated Bridge River, British Columbia, Canada, to determine whether an environmental flow release designed to increase salmonid productivity was successful. A hierarchical Bayesian model was used to compare juvenile Pacific salmon (Oncorhynchus spp.) abundance before and after the flow release. 3. We found that the total number of salmonids did increase after the release, but most of the gains could be attributed to the rewatering of a previously dry channel located immediately below the dam. In reaches that had flowing water during the baseline period, the response of individual salmon species to the increase in flow was variable, and there was little change in total abundance after the flow release. Our results were inconsistent with both habitat modelling, which predicted a decrease in habitat quality with increasing flow, and holistic instream flow approaches, which imply greater benefits with larger flows. 4. We question whether biotic responses to flow changes can be predicted reliably with currently available methods and suggest that adaptive management or the use of decision tools that account for the uncertainty in the biotic response is required for instream flow decisions when the competing demands for water are great.     

Does proximity to aquatic pollution affect reproductive traits in a wild‐caught intertidal fish?

How chronic exposure to aquatic pollution affects reproductive traits was assessed in nesting wild-caught plainfin midshipman Porichthys notatus in areas with low and high contaminant exposure on Vancouver Island, British Columbia. Males in high-exposure areas had a greater degree of testicular asymmetry, sperm with shorter heads and fewer live eggs in their nests. The results of this study provide important insights into the potential consequences of contaminant exposure on the reproductive physiology of wild-caught fishes.     

Freshwater fish introductions in mediterranean‐climate regions: are there commonalities in the conservation problem?

Aim To compare patterns and drivers of freshwater fish introductions across five climatically similar regions and evaluate similarities and differences in the non‐native species introduced. Location Five mediterranean‐climate regions: California (USA), central Chile, south‐western Australia, the Iberian peninsula (Spain and Portugal) and the south‐western Cape (South Africa). Methods Species presence–absence for native and non‐native fishes were collated across the regions, and patterns of faunal change were examined using univariate and multivariate statistical approaches. Taxonomic patterns in freshwater fish introductions were evaluated by comparing the number of species introduced by order to the numbers expected from binomial probabilities. Factors influencing multiple introductions of freshwater fish species in mediterranean regions were determined using generalized linear modelling. Results High levels of endemism (70–90%) were revealed for south‐western Cape, south‐western Australia and Chile. Despite their high rates of endemism, all regions currently have more non‐native species than endemic species. Taxonomic selection was found for five orders, although this was only significant for Salmoniformes across regions. The average increase in regional compositional similarity of fish faunas resulting from non‐native fish introductions was 8.0%. Important factors predicting multiple introductions of a species include previous introduction success and mean latitude of its distribution Main conclusions The mediterranean‐climate regions of the world, separated by vast distances, originally had a few fish species in common but are now more similar, owing to species introductions, illustrating the extent and importance of taxonomic homogenization. Introductions are largely driven by taxonomically biased human interests in recreational fisheries, aquaculture and ornamental pet species.     

Can we predict carbon stocks in tropical ecosystems from tree diversity? Comparing species and functional diversity in a plantation and a natural forest

? Linking tree diversity to carbon storage can provide further motivation to conserve tropical forests and to design carbon-enriched plantations. Here, we examine the role of tree diversity and functional traits in determining carbon storage in a mixed-species plantation and in a natural tropical forest in Panama. ? We used species richness, functional trait diversity, species dominance and functional trait dominance to predict tree carbon storage across these two forests. Then we compared the species ranking based on wood density, maximum diameter, maximum height, and leaf mass per area (LMA) between sites to reveal how these values changed between different forests. ? Increased species richness, a higher proportion of nitrogen fixers and species with low LMA increased carbon storage in the mixed-species plantation, while a higher proportion of large trees and species with high LMA increased tree carbon storage in the natural forest. Furthermore, we found that tree species varied greatly in their absolute and relative values between study sites. ? Different results in different forests mean that we cannot easily predict carbon storage capacity in natural forests using data from experimental plantations. Managers should be cautious when applying functional traits measured in natural populations in the design of carbon-enriched plantations.     

Dynamics in Central European near‐natural Abies‐Fagus forests: Does the mosaic‐cycle approach provide an appropriate model?

Question: The mosaic‐cycle concept of forest dynamics dominates in Central Europe. According to this concept intermediate‐scale disturbances only accelerate the forest break‐up under existing cycles of forest development. Is such an approach correct, or should new developmental cycles be elaborated for intermediate‐scale disturbances? Location: Near‐natural Abies alba ‐ Fagus sylvatica forests in the ?wiétokrzyski National Park in Central Poland. In these forests intermediate‐scale disturbances occurred between 1970 and 1990. Methods: Data were collected twice in areas surrounding 212 permanent sample points (in 1994 and 2004). Two increment cores were taken from 259 sample Abies trees. The effect of intermediate‐scale disturbances on radial increment of Abies was assessed. Probabilities of stand transition during a 10‐year period between individual stages and phases of development of the mixed forest were calculated. The development stages and phases were arranged into hypothetical succession series of successive changes. Results: In 1994 70 stands and in 2004, 47 stands representing stages and phases containing the older generation formed by trees > 100–150 years were found. Also, in 1994 142 and in 2004, 165 stands representing stages and phases containing the younger generations only, formed by trees < 100‐150 years, were recorded. Stages and phases containing only younger generations do not occur in the existing forest development cycle which does not consider the influence of intermediate‐scale disturbances separately. Two developmental cycles, which take into account the presence of the older generation and the younger generations only (under conditions of the occurrence of intermediate‐scale disturbances), are proposed. Conclusion: The mosaic‐cycle concept of forest dynamics can be used to analyse the dynamics of Central European near‐natural mixed‐species forests, but new developmental cycles should be elaborated for intermediate‐scale disturbances.     

To recycle or steal? Nutrient resorption in Australian and Brazilian mistletoes from three low‐phosphorus sites

Resorption is the process by which nutrients are withdrawn from leaves prior to leaf fall. Mistletoes are generally thought not to rely on nutrient resorption; being xylem‐tapping parasites, they instead derive the nutrients required for new growth from their host plant, at little or no cost. We measured nutrient (N, P, K, Ca, Mg) resorption in 18 parasitic mistletoe–host species pairs distributed across three sites with notably low‐P soil, also quantifying relationships with leaf lifespan (LL) and specific leaf area (SLA). There was little or no evidence of N, Ca or Mg resorption. By contrast, on average ～30% of P and ～20% of K were resorbed prior to leaf fall. Longer LL in mistletoes was associated with lower N and P concentrations in mistletoes and in host leaves. We provide evidence that, even though mistletoes are relatively inefficient in terms of nutrient resorption compared to non‐parasite species, on low‐P soils their ecological and evolutionary strategies for conserving phosphorous involve modulation of both leaf lifespan and P concentration in senesced leaves.