Visible and invisible effects of hurricanes on forest ecosystems: an international review

Abstract Hurricanes have visible and invisible effects on forests. The visible effects are dramatic, noticeable over the short‐term and relatively well documented in the literature. Invisible effects are less understood as they require well‐focused research both in the short‐ and long‐term time scales. This review of the literature on hurricane effects focuses on the Neotropics and the temperate zone of North America. The material is organized according to a heuristic model that distinguishes between immediate effects (0 to 3 years), immediate responses (0 to 20 years), trajectories of responses (0 to 100 years) and long‐term legacies (>100 years). It is suggested that the ecological role of hurricanes involves six principal effects: 1. they change the ecological space available to organisms; 2. they set organisms in motion; 3. they increase the heterogeneity of the landscape and the variability in ecosystem processes; 4. they rejuvenate the landscape and its ecosystems and redirect succession; 5. they shape forest structure, influence their species composition and diversity and regulate their function; and 6. they induce evolutionary change through natural selection and ecological creativity through self‐organization. A new approach to hurricane research will study hurricanes at the same scale at which they operate (i.e., across latitudes and longitudes and over disturbed and undisturbed landscapes). This research will require networks of observation platforms located along expected hurricane paths to facilitate forest structure and functioning observations across gradients of hurricane frequency and intensity. This research will also require use of remote sensing and automated wireless technology, hardened to survive hurricane‐strength winds and floods to assure real time measurements of the characteristics of hurricanes and ecosystem responses. No progress will be forthcoming in the understanding of hurricane effects if we do not learn to quantify objectively the energy dissipation of hurricanes on the full grid of affected forests as the hurricane passes over a landscape.     

Karyotype analysis and chromosome evolution in southernmost South American species of Crotalaria (Leguminosae)

Karyotypes of 18 populations belonging to eight of the southernmost species of South American Crotalaria were examined. All had x  = 8, except C. incana which had x  = 7. Diploid, tetraploid and octoploid species were found. The octoploid is a new record and is the highest ploidy level detected so far in the genus. Species within the same ploidy level could be distinguished by quantitative karyotype parameters and by the size and position of the satellites. From an evolutionary point of view, our results support a decrease of the basic chromosome number by dysploidy. Polyploidy is one of the more important mechanisms of chromosome change, even though some structural rearrangements may explain variations of the karyotype formula. Gigas effects, due to polyploidy, were evident in the length of the stomatal guard cells and in pollen size, but were less clear in seed weight. Nucleotype effects, caused by the DNA quantity in a nucleus, were also evident for pollen and stomatal guard cell size and seed weight, although only in diploids with x  = 8 for the latter character. Chromosome data are further discussed in the light of the infrageneric systematic arrangement.  © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society , 2006, 150 , 329–341.     

Inheritance of somatic embryogenesis and plantlet regeneration from primary (type 1) callus in maize

Summary Genetic factors controlling the differential expression of somatic embryogenesis and plant regeneration of maize from tissue culture were studied in two crosses. Inbred, hybrid, F2 and backcross generations developed from crossing maize inbred A188 with two commercially important inbred maize lines (B73 and Mo17) demonstrated genetic and environmental effects on somatic embryogenesis and plant regeneration when immature zygotic embryos were cultured on MS medium. Additive gene effects were more important in both crosses than dominant gene effects for precent somatic embryogenesis and percent or number of plants regenerated per embryo when generation means were analyzed. In backcross generations of each cross, cytoplasmic, maternal and/or paternal effects were significant for frequency of somatic embryos three weeks after culture as well as frequency, or number of plants regenerated per embryo, nine weeks after culture. Analysis of genetic variances suggests at least one gene (or block of genes) controls the expression of the frequency of somatic embryogenesis in these crosses. Differences in somatic embryogenesis and plant regeneration between B73 and Mo17 are discussed. This is Journal Paper No. 11,435 of the Purdue University Agricultural Experiment Station.     

siRNA脱靶效应类型与规避策略

小干扰RNAs(small interfere RNAs,siRNAs)能够特异性沉默靶基因,现已广泛应用于阐明基因功能,鉴定药物靶点,开发比目前更有效的治疗药物。然而siRNA脱靶效应(off-target effects,OTEs)导致基因沉默实验中表型效应解释复杂化,引起siRNA治疗毒副作用。与siRNA有关的脱靶效应有microRNA样脱靶效应、免疫刺激、RNAi元件饱和三种类型。综述了siRNA脱靶效应类型及减轻脱靶效应的方法,以增强该技术的实用性。     

Quantitative genetics and the persistence of environmental effects in clonally propagated organisms

Abstract.— Phenotype is often viewed as a product of genes and the environment in which these genes are expressed. However, numerous studies have shown that environment can cause lasting changes in phenotype that can be passed from one generation to the next, much as genes are transmitted. In clonally propagated organisms, persistence of environmental effects has been observed in a range of plant and animal species, but has rarely been the object of study. We measured the persistence and magnitude of environmental effects on phenotype over three clonal generations in the arctic sedge Eriophorum vaginatum . We found that the environment in which tillers developed had large effects on their later performance (parental effects) and that these effects were in part independent of the size of tillers. The magnitude and persistence of environmental effects did not differ between environmental treatments or among genotypes. However, after 52 weeks of growth and two rounds of clonal propagation, grandparental treatment effects were not significant. We describe methods that can be used in quantitative genetics studies of clonal organisms to reduce bias in estimates of genotypic and environmental variance and argue that the persistence of environmental effects in clonal plant material has ecological and evolutionary consequences similar to those described for maternal environmental effects in sexual organisms.     

Density-dependent effects of multiple predators sharing a common prey in an endophytic habitat

Multiple predator species feeding on a common prey can lead to higher or lower predation than would be expected by simply combining their individual effects. Such emergent multiple predator effects may be especially prevalent if predators share feeding habitat. Despite the prevalence of endophagous insects, no studies have examined how multiple predators sharing an endophytic habitat affect prey or predator reproduction. We investigated density-dependent predation of Thanasimus dubius (Coleoptera: Cleridae) and Platysoma cylindrica (Coleoptera: Histeridae) on a bark beetle prey, Ips pini (Coleoptera: Scolytidae), in a laboratory assay. I. pini utilize aggregation pheromones to group-colonize and reproduce within the stems of conifers. T. dubius and P. cylindrica exploit these aggregation pheromones to arrive simultaneously with the herbivore. Adult T. dubius prey exophytically, while P. cylindrica adults enter and prey within the bark beetle galleries. Larvae of both predators prey endophytically. We used a multiple regression analysis, which avoids confounding predator composition with density, to examine the effects of varying predator densities alone and in combination on herbivore establishment, herbivore reproduction, and predator reproduction. Predators reduced colonization success by both sexes, and decreased I. pini reproduction on a per male and per female basis. The combined effects of these predators did not enhance or reduce prey establishment or reproduction in unexpected manners, and these predators were entirely substitutable. The herbivores net replacement rate was never reduced significantly below one at prey and predator densities emulating field conditions. Similar numbers of each predator species emerged from the logs, but predator reproduction suffered from high intraspecific interference. The net replacement rate of P. cylindrica was not affected by conspecifics or T. dubius. In contrast, the net replacement rate of T. dubius decreased with the presence of conspecifics or P. cylindrica. Combinations of both predators led to an emergent effect, a slightly increased net replacement rate of T. dubius. This may have been due to predation by larval T. dubius on pupal P. cylindrica, as P. cylindrica develops more rapidly than T. dubius within this shared habitat.     

铅的生物学毒性效应

铅对生物体具有多方面的毒性,可导致智力低下、造血机能障碍、高血压、肾病等,其毒性机理还在探索阶段。本文主要介绍了铅对各个系统如神经系统、心血管系统、泌尿系统、生殖系统以及个体发育的毒性效应。     

Phenomena leading to cell survival values which deviate from linear-quadratic models

For several decades, the prevailing paradigm for modeling the effects of ionizing radiation (IR) on living systems was the target model with its inherent assumptions--that only those cells in the radiation path whose molecules sustained collisions with high energy particles and rays were damaged, that the damage was proportional to the energy absorbed by each cell and to the number of cells absorbing energy, and that all cells had identical sensitivities to radiation. However, evidence has accumulated that cells exhibit phenomena at low radiation exposures that appear to contradict at least one of these assumptions. Some of these phenomena currently under active study include low-dose hypersensitivity (HRS), increased radiation radioresistance (IRR), the adaptive response (AR), the bystander effect (BE), and death-inducing factor (DIE). These effects may interact to give rise to other phenomena such as hormesis, in which small amounts of otherwise toxic agent appear to be beneficial. Elucidating the cellular and molecular bases for these phenomena will lead to greater understanding of the relationships of these processes, including hormesis, to human health.     

Can environmental conditions experienced in early life influence future generations?

The consequences of early developmental conditions for performance in later life are now subjected to convergent interest from many different biological sub-disciplines. However, striking data, largely from the biomedical literature, show that environmental effects experienced even before conception can be transmissible to subsequent generations. Here, we review the growing evidence from natural systems for these cross-generational effects of early life conditions, showing that they can be generated by diverse environmental stressors, affect offspring in many ways and can be transmitted directly or indirectly by both parental lines for several generations. In doing so, we emphasize why early life might be so sensitive to the transmission of environmentally induced effects across generations. We also summarize recent theoretical advancements within the field of developmental plasticity, and discuss how parents might assemble different ‘internal’ and ‘external’ cues, even from the earliest stages of life, to instruct their investment decisions in offspring. In doing so, we provide a preliminary framework within the context of adaptive plasticity for understanding inter-generational phenomena that arise from early life conditions.     

Genetic architecture and maternal contributions of early‐life survival in lake trout Salvelinus namaycush

The influences of additive, non‐additive and maternal effects on early survival (uneyed embryo survival, eyed embryo survival, alevin survival and overall survival to first feeding) were quantified in lake trout Salvelinus namaycush using a 7 × 7 full‐factorial breeding design. Maternal effects followed by non‐additive genetic effects explained around one third of the phenotypic variance of the survival traits. Although the amount of additive genetic effects were low (<1%), suggesting a limited potential of the traits to respond to new selection pressures, how maternal and non‐additive genetic effects may respond to selection under certain circumstances are discussed.     

Cross-Generational Effects of Parental Age on Offspring Longevity: Are Telomeres an Important Underlying Mechanism?

Parental age at offspring conception often influences offspring longevity, but the mechanisms underlying this link are poorly understood. One mechanism that may be important is telomeres, highly conserved, repetitive sections of non-coding DNA that form protective caps at chromosome ends and are often positively associated with longevity. Here, the potential pathways by which the age of the parents at the time of conception may impact offspring telomeres are described first, including direct effects on parental gamete telomeres and indirect effects on offspring telomere loss during pre- or post-natal development. Then a surge of recent studies demonstrating the effects of parental age on offspring telomeres in diverse taxa are reviewed. In doing so, important areas for future research and experimental approaches that will enhance the understanding of how and when these effects likely occur are highlighted. It is concluded by considering the potential evolutionary consequences of parental age on offspring telomeres.     

Shift from short-term competition to facilitation with drought stress is due to a decrease in long-term facilitation

Disentangling short- and long-term neighbour effects, using both removal and observational methods within a single experiment, has strongly improved our understanding of the driving mechanisms of plant–plant interactions. However, there has been no attempt to assess two important underlying processes of their changes along gradients, either environmental-severity (changes in target performance without neighbours) or neighbour-traits (changes in performance with neighbours) effects, the former previously shown in alpine communities to be involved in competition and the latter in facilitation. We addressed this goal in an experiment conducted in continental saline depressions (sebkhas) from the Mediterranean arid climate of central Tunisia. We quantified short- and long-term effects of dominant shrubs, transplanting three target grass species in open, nurse and removed-nurse microhabitats of two habitats of different salinity levels in height sebkhas. The design extended greographically from central Tunisia to the Libyan border, 500 km southeastward. We used the relative interaction index to calculate short- and long-term effects before and after the dry summer seasons and environmental-severity and neighbour-trait effects. Short-term effects were slightly negative and long-term effects strongly positive before the dry summer season in the two habitats. Short-term effects switched to positive with increasing drought stress, due to an environmental-severity effect, whereas long-term effects decreased due to a neighbour-trait effect. Salinity did not affect neither short- nor long-term shrub effects. Soil moisture measurements showed that both changes were due to vanishing shrub soil engineering-effects during the summer drought. We conclude that an increase in short-term facilitation with increasing drought stress through time, apparently supporting the stress gradient hypothesis, might be due to a decrease in long-term facilitation. Thus, we recommend using, as much as possible, both the removal and observational methods in experiments assessing changes in plant–plant interactions along stress gradients to avoid wrong conclusions.     

Effectiveness of the white halo fungus, Cephalosporium lecanii, against field populations of coffee green bug, Coccus viridis

The white halo fungus, Cephalosporium lecanii, was highly effective in the control of the coffee green bug, Coccus viridis, under field conditions. With two fortnightly applications of 16 × 10⁶ spores/ml, it caused the maximum mortality (73.1%) of the bugs 2 weeks after second application. The mortality rate was increased in the same count to 97.6% when Tween 20 (0.05%) was added to the spore suspension. Addition of starch, Lerolat N 100, Erkentrol, and Wannin to the spore suspension also increased the pathogenicity of the fungus. Among the three insecticides tested along with the fungus, 0.225% Orthene and 0.1% DDT failed to increase the mortality rate of the green bugs while 0.1% BHC hampered the effectiveness of the fungus greatly. In another trial, the fungus was applied at five different dosages and 16 × 10⁶ spores/ml was found adequate to cause a 77.9% mean mortality. The fungus was more effective as high-volume spray than as a low-volume spray. The pathogen, when tested in a drought period, was comparatively less effective, and addition of the humectant glycerol increased the mortality of the bugs due to fungus infection.     

Leaf herbivory is more impacted by forest composition than by tree diversity or edge effects

Links between biodiversity and ecosystem functioning are well established. Beyond biodiversity per se, community composition can have strong effects on ecosystem functioning. Furthermore, spatial processes including edge effects, can impact the diversity-functioning relationship. These spatial processes are especially relevant within a food web context, such as the transfer of plant biomass across the food chain through herbivory. The relative importance of diversity, community composition and spatial context on herbivory pressure at the community and the species level is, however, poorly understood.To fill this gap in our understanding, we studied to what degree herbivory in temperate forest plots varies according to edge distance, tree diversity and forest composition. In contrast to the prevailing view of tree herbivory increasing at forest edges, we found that the effects of forest edge and tree diversity on leaf herbivory were masked by effects of forest composition, i.e. the specific contributions of the tree species. The strongest composition effect found was increased herbivory on Quercus robur in the presence of Fagus sylvatica.Our findings highlight that neither edge distance, tree diversity, nor the interaction affected one ecosystem function, namely herbivory, whilst tree community composition did. This warrants consideration of identity and composition effects in future studies if we are to deepen our understanding of the determinants of ecosystem functions across systems.     

Genetic and environmental contributions to the variance of body height in a sample of first and second degree relatives.

Height was measured in a health screening of the population in Nord-Trøndelag, Norway. Correlations were computed for 24,281 pairs of spouses, 43,613 pairs of parents and offspring, 19,168 pairs of siblings, 1,318 pairs of grandparents and grandchildren, 1,218 cognate avuncular pairs, 849 noncognate avuncular pairs, 175 pairs of same-sexed twins, and smaller groups of other types of relatives. Fitting of structural equation models showed proportions of additive genetic variance of approximately 0.8 for both sexes and small sex-specific effects that probably reflect genetic dominance or environmental sibling effects. The correlations between parents and offspring were significantly lower in old than young cohorts, seeming to imply some kind of interaction effect between genes and environment. © 1992 Wiley-Liss, Inc.     

Ascospore discharge in Pleospora herbarutn (Pers.) Rabenh. (Dothideales) stimulated by near-ultraviolet radiation

An isolate of P. herbarum from beet seed failed to discharge ascospores in darkness but did so when exposed to light either continuously or cyclically (12 h light/12 h dark). When colonies with mature asci were subjected to a regime of alternating light and darkness for 54 days at a constant temperature of 20^°C, ascospores were discharged over the entire period. Maximum discharge occurred on the 23rd day; few spores were liberated towards the end of the period. Light-induced spore discharge occurred over a wide temperature range (10–30^°C) with the optimum being approximately 14–23^°C. When light of different wavelengths (300 nm-infrared) was tested, only near-ultraviolet (310–330 nm) radiation stimulated ascospore discharge. Vertical height of ascospore discharge was also determined. When ascospores were trapped above colonies over a range of heights (2–80 mm), most spores were caught at 2 mm; none was caught at heights above 30 mm. The number of spores trapped at 30 mm was only 1.3% of the capture at 2 mm.     

RNA干扰非特异性研究进展

RNA干扰(RNAi)靶向基因治疗是目前研究的热点,其依赖序列特异性的基因表达调节为生物学发展带来重大突破.然而在应用RNAi时所产生的一系列非特异性反应阻碍了RNAi进一步的临床应用,这其中主要包括脱靶基因抑制和内在免疫副反应等.主要从非特异性反应的产生机制、脱靶效应的预测和RNAi非特异性的控制3个方面对近几年研究成果进行综述,探讨临床应用前景.     

Long-term effects of forest fragmentation on Amazonian ant communities

Aim To analyse the effects of forest fragmentation on ant communities in an Amazonian landscape that has been fragmented for over a century. Location The region surrounding the village of Alter do Chão in the Brazilian Amazonian state of Pará (2°30′ S, 54°57′ W). Methods Collection of ants and measurements of tree density were performed along transects established in eight sites in continuous forest and in 24 forest fragments surrounded by savanna vegetation. Data on size, perimeter, and degree of isolation (distance to continuous forest and distance to nearest area of forest > 5 ha) of each fragment were obtained from a georeferenced Landsat image of the study area. Results There were significant differences in species richness and composition between fragments and continuous forest, and these differences were not related to intersite variation in vegetation structure (tree density). Fragments supported fewer ant species per plot, and these species tended to represent a nested subset of those found in continuous forests. Fragments had significantly fewer rare species and fewer ant genera. However, fragments and continuous forest had similar numbers of species that also occur in the savanna matrix (i.e. that are not forest specialists). Multiple linear regression analyses indicated that species richness and composition in the fragments are significantly affected by fragment area, but not by fragment shape and degree of isolation. More species were found in larger fragments. Main conclusions Forest fragmentation influences the organization of ant communities in Amazonian savanna/forest landscapes. Forest fragments harboured, on average, 85% of the species found in continuous forest. That these fragments, despite their long history of isolation, support a relatively large complement of the species found in continuous forest is surprising, especially given that in some recently fragmented landscapes the proportion of species surviving in the fragments is lower. Differences in inter‐fragment distance and type of matrix between Alter do Chão and these other landscapes may be involved. The fact that fragments at Alter do Chão are surrounded by a natural (rather than an anthropogenic) habitat, and that most of them are less than 300 m from another forest area, may have helped to ameliorate the adverse effects of forest fragmentation.