On the trail of pulmonary tuberculosis based on rib lesions: results from the Human Identified Skeletal Collection from the Museu Bocage (Lisbon, Portugal)

In the last 20 years, studies on human identified skeletal collections have revealed a significant relationship between new bone formation on the visceral surface of ribs and pulmonary tuberculosis (TB). To improve methods of differential diagnosis of respiratory diseases in archaeological skeletons, an investigation was conducted on 197 individuals from the Human Identified Skeletal Collection of the Museu Bocage (Lisbon, Portugal). This sample included 109 males and 88 females who lived during the 19th-20th centuries, with ages at death ranging from 13-88 years. The skeletons were grouped according to cause of death: 1) pulmonary TB (N = 84); 2) pulmonary non-TB diseases (N = 49); and 3) a control group (N = 64) composed of individuals randomly selected among the extrapulmonary non-TB causes of death. The ribs, sterna, scapulae, and clavicles were macroscopically observed. New bone formation on the visceral surface of ribs was recorded in 90.5% (76/84) of individuals who died from pulmonary TB, in 36.7% (18/49) with a pulmonary non-TB disease as cause of death, and in 25.0% (16/64) of the control group. These differences were statistically significant (P < 0.001). Furthermore, in individuals with pulmonary TB, the bony lesions presented mainly as lamellar bone on the vertebral end of the upper and middle thoracic rib cage. Proliferative alterations also occurred on one sternum and in nine clavicles and eight scapulae. This work strongly supports the results of similar studies performed on other documented collections, suggesting that new bone formation on ribs, although not pathognomonic, is a useful criterion for the differential diagnosis of pulmonary TB.     

Anatomy of a serial killer: differential diagnosis of tuberculosis based on rib lesions of adult individuals from the Coimbra Identified Skeletal Collection, Portugal

The role of new bone formation on visceral surfaces of ribs in the diagnosis of tuberculosis (TB) in past human populations has been explored by many researchers, using both skeletal remains with known causes of death and archaeological samples. This study focuses, firstly, on adult skeletons from the Coimbra Identified Skeletal Collection in Portugal and investigates the skeletal manifestations of individuals known to have died from TB; secondly, this study focuses on the role of rib lesions in the diagnostic criteria for TB. One hundred and fifty-seven males and 106 females aged between 22-87 years were examined; causes of death were assigned as pulmonary TB, extrapulmonary TB, and pulmonary non-TB; a control group, extrapulmonary non-TB, was selected from the remaining individuals. Of individuals with rib lesions, 85.7% (69/81) had pulmonary or extrapulmonary TB as an assigned cause of death, while 17.8% (16/90) of individuals with rib lesions had a non-TB cause of death. Rib lesions were significantly more common in individuals who had died from TB, although the lesions cannot be considered pathognomonic for TB. In individuals dying from pulmonary TB, ribs in the central part of the rib cage were most affected, at their vertebral ends. The lower part of the rib cage may be a marker for peritoneal TB, and "coral-like" new bone formation on ribs may be an indicator of neoplastic disease. Further work on rib involvement in TB in clinical contexts, and the study of further documented skeletal collections, are recommended.     

A comparison of early Neolithic crop and weed assemblages from the Linearbandkeramik and the Bulgarian Neolithic cultures: differences and similarities

The spread of early agriculture from the Mediterranean to central Europe is still poorly understood. The new subsistence reached western central Europe during the second half of the 6th millennium cal b.c. This paper presents a comparison of crop and weed species from 33 Bandkeramik sites from Austria and Germany and six Bulgarian Neolithic sites. The aim is to investigate whether the early cultivation system brought in from the eastern Mediterranean was adapted to European conditions in Bulgaria or further West. Some characteristics of the potential weeds are interpreted with respect to the cultivation systems and the origin of the species.     

Tooth wear and dental pathology at the advent of agriculture: new evidence from the Levant

Differences in patterns of diet and subsistence through the analysis of dental pathology and tooth wear were studied in skeletal populations of Natufian hunter-gatherers (10,500-8300 BC) and Neolithic populations (8300-5500 BC, noncalibrated) from the southern Levant. 1,160 Natufians and 804 Neolithic teeth were examined for rate of attrition, caries, antemortem tooth loss, calculus, periapical lesions, and periodontal processes. While the Natufian people manifest a higher rate of dental attrition and periodontal disease (36.4% vs. 19%), Neolithic people show a higher rate of calculus. Both populations manifested low and similar rates of caries (6.4% in the Natufian vs. 6.7% in the Neolithic), periapical lesions (not over 1.5%), and antemortem tooth loss (3.7% vs. 4.5%, respectively). Molar wear pattern in the Neolithic is different than in the Natufian. The current study shows that the dental picture obtained from the two populations is multifactorial in nature, and not exclusively of dietary origin, i.e., the higher rate and unique pattern of attrition seen in the Natufian could result from a greater consumption of fibrous plants, the use of pestles and mortars (which introduce large quantities of stone-dust to the food), and/or the use of teeth as a "third hand." The two major conclusions of this study are: 1) The transition from hunting and gathering to a food-producing economy in the Levant did not promote changes in dental health, as previously believed. This generally indicates that the Natufians and Neolithic people of the Levant may have differed in their ecosystem management (i.e., gathering vs. growing grains), but not in the type of food consumed. 2) Changes in food-preparation techniques and nondietary usage of the teeth explain much of the variation in tooth condition in populations before and after the agricultural revolution.     

Emerging genetic patterns of the European Neolithic: perspectives from a late Neolithic Bell Beaker burial site in Germany

The transition from hunting and gathering to agriculture in Europe is associated with demographic changes that may have shifted the human gene pool of the region as a result of an influx of Neolithic farmers from the Near East. However, the genetic composition of populations after the earliest Neolithic, when a diverse mosaic of societies that had been fully engaged in agriculture for some time appeared in central Europe, is poorly known. At this period during the Late Neolithic (ca. 2,800-2,000 BC), regionally distinctive burial patterns associated with two different cultural groups emerge, Bell Beaker and Corded Ware, and may reflect differences in how these societies were organized. Ancient DNA analyses of human remains from the Late Neolithic Bell Beaker site of Kromsdorf, Germany showed distinct mitochondrial haplotypes for six individuals, which were classified under the haplogroups I1, K1, T1, U2, U5, and W5, and two males were identified as belonging to the Y haplogroup R1b. In contrast to other Late Neolithic societies in Europe emphasizing maintenance of biological relatedness in mortuary contexts, the diversity of maternal haplotypes evident at Kromsdorf suggests that burial practices of Bell Beaker communities operated outside of social norms based on shared maternal lineages. Furthermore, our data, along with those from previous studies, indicate that modern U5-lineages may have received little, if any, contribution from the Mesolithic or Neolithic mitochondrial gene pool.     

Impressions of wild cereal chaff in pisé from the 10th millennium uncal B.P. at Jerf et Ahmar and Mureybet: Northern Syria

Pisé (daub or building earth) from Jerf el Ahmar and Mureybet was examined and found to contain plant impressions made by the fine fraction of cereal chaff which had been added to the pisé as a tempering medium. Four wild grasses were identified from impressions, while over fifty taxa were identified from charred remains. Chaff tempering was present in all samples examined and was composed of spikelet bases and fragments of spikelets. Several aspects of these findings complement results obtained from charred remains. The sheer quantity of building material with chaff implies that cereals were widely available. De-husking and winnowing appear to have been carried out on a large scale, probably near the site. Firm evidence for wild rye confirms previous identifications for this period in the middle Euphrates, rye being difficult to distinguish from wild einkorn if only grain is available for identification. The quality of the chaff provides some evidence of crop processing.     

Climate at the onset of western Mediterranean agriculture expansion: Evidence from stable isotopes of sub-fossil oak tree rings in Spain

Climate conditions during the early Holocene may have contributed to the spread of Old World agriculture from its area of birth, in the Fertile Crescent (Near East), west through the Mediterranean Basin. Reconstructing the specific environmental conditions existing in early agricultural settlements of the western Mediterranean may help to elucidate this point. The aim of this work was to gain information on past climate of one of the earliest agricultural settlements of the Iberian Peninsula, La Draga, a lacustrine site dating back to the 2nd half of the 8th millennium BP, in which post fragments of deciduous oak have been exceptionally well preserved in an anaerobic environment (sub-fossil wood). We studied the relationship between climate factors and carbon isotope discrimination (Δ¹³C) and oxygen isotope composition (δ¹⁸O) in wood α-cellulose from modern tree-ring series of Quercus humilis Mill. and Quercus petraea (Matt) Liebl. recovered from the area. Climatic responses observed in extant material were used to interpret the isotopic signal of wood α-cellulose extracted from sub-fossil wood. Results showed that water availability of late spring, early summer and September influences Δ¹³C and δ¹⁸O, which allows their use as proxies for palaeoclimatic reconstruction. Differences between sub-fossil and extant samples in Δ¹³C (19.35 vs. 18.02‰) and δ¹⁸O (26.32 vs. 29.28‰) records suggest slightly lower temperatures and higher plant water availability than at present during the establishment of agriculture at the site. These results seem to disprove the existence of an environmental limitation preventing continuation of hunting and gathering activities as a cause for the adoption of agriculture in this early agricultural site on the Iberian Peninsula.     

Early Humans at the eastern gate of Europe: The discovery and investigation of Oldowan sites in northern Caucasus

This article presents the results of excavations and multidisciplinary investigations of the extraordinary Oldowan site of Muhkai II in the northern Caucasus (Republic of Dagestan, Russia) from 2008 to 2012. Archaeological and palaeontological materials are summarized together with data from palaeomagnetic and palynological analyses, obtained from 34 cultural layers at the site. This gives an opportunity for a new approach to the question of the timing and route of the first human settlement of the middle latitudes of western Eurasian, including south-eastern Europe. Judging by the data obtained, this occurred around 2 million years BP and a route of migration was located along the western shore of the Caspian Sea.     

Crop water availability in early agriculture: evidence from carbon isotope discrimination of seeds from a tenth millennium BP site on the Euphrates

The analysis of carbon isotope discrimination (Δ) in crop plant remains from archaeological sites may help to assess water availability for early agriculture. This study presents the analysis of Δ in seeds of naked wheat (Triticum aestivum/durum), lentil (Lens orientalis/culinaris), and flax (Linum sp.) found at the archaeological site of Tell Halula in the valley of the Middle Euphrates (Syria). This Neolithic site is the oldest in this region of the Fertile Crescent where the cultivation of domesticated plants has been reported, with seed remains ranging from 9550 to 8465 BP. Most of the seeds analysed showed Δ values greater than 16 ‰, reaching 20 ‰ for some samples of flax. For wheat, Δ values were much higher than those reported in present-day (1996) durum wheat crops cultivated under rainfed conditions in north-west Syria under environments with somewhat higher rainfall than Tell Halula. Similarly, grains of present-day (1997) barley cultivated in the archaeological site also showed lower values than those found in archaeological kernels. An empirical relationship between Δ of mature kernels and total precipitation (plus irrigation where applicable) from heading to maturity (r² = 0.82, n = 11) was established for durum wheat, currently cultivated in different environments of the Mediterranean basin. The resulting relationship was applied to the data on Δ of wheat fossil kernels from Tell Halula to estimate the accumulated water inputs during the time (about 6 weeks) the kernels were produced. Calculated water inputs for wheat during early agriculture were (over 110 mm) at least 5 times higher than current-day rainfall accumulated in Tell Halula during the same phenological period. These results strongly suggest that early agriculture wheat was cultivated at Tell Halula under much wetter conditions than are currently to be found in the area. The presence of flax and its very high Δ values also support this conclusion. Whether such humid conditions during cultivation were due to moister conditions prevailing at this time, by planting in alluvial areas or by irrigation works is discussed.     

The rapid yellowing of spruce at a mountain site in the Central Black Forest (Germany). Combined effects of Mg deficiency and ozone on biochemical, physiological and structural properties of the chloroplasts

Biochemical, physiological and ultrastructural changes of the chloroplasts were examined in the course of the rapid yellowing process of spruce (Picea abies (L.) Karst.) at a Mg-deficient and ozone polluted mountain site (Sch?llkopf mountain, Central Black Forest, Germany, 840 m a.s.l.). While at an early stage of yellowing the chlorophyll (Chl) content of the needles decreased slowly, significant changes occurred in the chloroplasts: The lability of the light-harvesting Chl a/b protein complex LHC II increased; the thylakoid cross-sectional area of chloroplasts in the outer mesophyll of the needles decreased, and their Chl fluorescence showed typical changes like the decrease of Fv/Fm and the increase of the photoinhibitory Fv quenching. Later on, the Chl content decreased rapidly, the changes in the chloroplasts continued and the needles turned yellow. Lutein and the pigments of the xanthophyll cycle were enhanced in relation to Chl a. Light and dark reactions of the xanthophyll cycle were highly active indicating efficient proton pumping and NADPH formation. The ratio of nonappressed to appressed thylakoid membranes increased with decreasing Fv/Fm suggesting that structural and fluorescence properties of the chloroplasts were related. The response of the needles to defined shading and improved Mg supply was also examined. The combined effects of strong sun light, low levels of non-Chl-bound Mg (Mg(free)) and ozone concentrations exceeding 80 microg m(-3) are shown to be necessary to induce the rapid yellowing process. For needles with Mg(free) < 0.12 mg g(-1) needle dry matter, the lability of the LHC II was correlated with the ozone concentration suggesting that the destabilization of the LHC II plays a central role in the rapid yellowing process.     

Brief communication: neurotraumatological aspects of head injuries resulting from sharp and blunt force in the early medieval period of southwestern Germany

Approximately 10% (33 of 304) of the predominantly male skulls from the 6th through 8th centuries in southwestern Germany exhibit cranial fractures derived from blunt or sharp force trauma. No evidence of fracture healing characterizes 24% (n = 8) of these individuals. All nonhealed fractures were caused by sharp force, and four of these wounds cross the sagittal sinus. The lengths of these straight-edged wounds, produced exclusively by sword blows, measure around 8.0 cm for fatal, and about 5.0 cm for nonfatal wounds. Seventy-six percent (n = 25) of these skulls exhibit some healing, which indicates that these injuries did not lead to immediate death. In this group are all depressed fractures resulting from blunt force blows. Two thirds of the 45 cranial injuries noted on these 33 skulls are located on the left side of these individuals, with a concentration in the frontoparietal region. Bony indications of wound infection occur in four cases (12%). Three crania exhibit circular trepanations in association with fractures. These phenomena are discussed in the context of modern neurotraumatological knowledge.     

Avian fossil assemblages at the onset of the LGM in the eastern Alps: A palaecological contribution from the Rio Secco Cave (Italy)

The avian fossil assemblages from the late Pleistocene deposits of the Rio Secco Cave (north-eastern Italy) is presented herein. We studied the layers that date back to the end of MIS3 and the beginning of MIS2, which also contain evidence of Gravettian frequentation dated to 33.5–30 ka cal BP. The systematic analysis revealed the presence of 18 species and other supraspecific taxa that supported palaeoenvironmental reconstructions. Taxa indicate that, at the onset of LGM, site surroundings were characterised by conifer or mixed forests, open grasslands, slow-flowing water bodies and mountain meadows with rocky outcrops, as indicated by Lagopus muta. Today, this environment is found above the tree line (beyond 1500–2000 m) and cannot be detected near the site, located at 580 m asl. Noteworthy, is also the finding of the second Italian late Pleistocene fossil record of Picus canus.     

On the accuracy of inferring energetic coupling between distant sites in protein families from evolutionary imprints: Illustrations using lattice model

It is suspected that correlated motions among a subset of spatially separated residues drive conformational dynamics not only in multidomain but also in single domain proteins. Sequence and structure‐based methods have been proposed to determine covariation between two sites on a protein. The statistical coupling analysis (SCA) that compares the changes in probability at two sites in a multiple sequence alignment (MSA) and a subset of the MSA has been used to infer the network of residues that encodes allosteric signals in protein families. The structural perturbation method (SPM), that probes the response of a local perturbation at all other sites, has been used to probe the allostery wiring diagram in biological machines and enzymes. To assess the efficacy of the SCA, we used an exactly soluble two dimensional lattice model and performed double‐mutant cycle (DMC) calculations to predict the extent of physical coupling between two sites. The predictions of the SCA and the DMC results show that only residues that are in contact in the native state are accurately identified. In addition, covariations among strongly interacting residues are most easily identified by the SCA. These conclusions are consistent with the DMC experiments on the PDZ family. Good correlation between the SCA and the DMC is only obtained by performing multiple experiments that vary the nature of amino acids at a given site. In contrast, the energetic coupling found in experiments for the PDZ domain are recovered using the SPM. We also predict, using the SPM, several residues that are coupled energetically. Proteins 2009. © 2009 Wiley‐Liss, Inc.     

Nutrition, aspects of land use and environment in medieval times in southern Germany: plant macro-remain analysis from latrines (late 11th–13th century a.d.) at the town of Überlingen, Lake Constance

From high medieval courtyards at überlingen, Lake Constance (Bodensee), 17 archaeobotanical samples from seven latrines (11th–13th century) were analysed for plant macrofossils. They contained small amounts of cultivated plants and many well preserved seeds and fruits of wild plants. The most numerous cereal finds were of Triticum spelta followed by Secale cereale. Recorded oil plants were Papaver somniferum and Linum usitatissimum. Cultivated and gathered fruits such as various Prunus species, Pyrus communis and Malus domestica, Rubus sp. and Fragaria vesca were eaten by the people of überlingen. Only one seed of Ficus carica was found which may have been imported; no other imported plants could be recognised. Agrostemma githago and Vaccaria hispanica were prevalent weeds. The presence of the latter probably indicates the cultivation of cereals on the steeper slopes above überlingen. It is shown that in central Europe, V. hispanica became a troublesome weed only around the 12th/13th century A.D. Grassland species—mainly from more or less wet locations—and ruderal plants of nitrogen-rich soils were well represented in the samples and characterize the surrounding area. Electronic Supplementary Material Supplementary material is available in the online version of this article at