P.m.r. studies on fully methylated disaccharides using lanthanide shift reagents: assignments of the methoxyl signals

The complexes of Eu(fod)₃ with per-O-methylated aldohexosylaldohexoses, consisting of d-glucopyranose and d-galactopyranose residues and having (1→2), (1→4), and (1→6) linkages, have been studied by using p.m.r. spectroscopy. It was found that Eu(fod)₃ binds preferentially to two neighbouring MeO-oxygens having an axial-equatorial relationship. Steric hindrance is a major factor in disfavouring certain sites. On the basis of Eu(fod)₃-effects on the methoxyl groups, and the comparison of the chemical shifts of corresponding groups in the permethylated mono- and di-saccharides, the signals for most of the Meo groups of the latter compounds were assigned. The shift increments of the signals for these MeO groups, with respect to those for the corresponding groups in the permethylated monomers, were related to the type and the configuration of the inter-sugar linkage. The potential of the shift increments for assignment purposes in other permethylated di- or higher-saccharides is discussed.     

5,7-Dihydroxy-3,6,8-trimethoxyflavone from the flowers of Gnaphalium elegans

5,7-Dihydroxy-3,6,8-trimethoxyflavone was isolated from the flowers of Gnaphalium elegans. The structure elucidation is based mainly on proton resonance studies using Eu(fod)₃ shift reagent.     

Cis-avicennol,a new pyranocoumarin from the root bark of Zanthoxylum elephantiasis

A new pyranocoumarin has been isolated from the root bark of Zanthoxylum elephantiasis and identified as cis-avicennol (6-(3-hydroxy-3-methyl-cis-but-1-enyl)-5-methoxy-2,2-dimethyl- 2H-benzo [1,2b:3,4b′] dipyran-8-one) on the basis of comparison of spectral data with that of trans-avicennol and conversion to tetrahydroavicennol. The usefulness of the lanthanide shift reagent Eu(fod)₃ in the assignment of cis configuration to the butenyl sidechain is briefly discussed.     

Detalolactone: A novel pyranocoumarin from the root bark of Zanthoxylum dipetalum

A novel dipyranocoumarin, dipetalolactone {2-oxo-6,6,10,10-tetramethylbenzo[1,2-b:3,4-b′:5,6-b″]tripyran}, has been isolated from the root bark of Zanthoxylum dipetalum and its structure proven by the synthesis of tetrahydrodipetalolactone. A second new pyranocoumarin, dipetaline, has been assigned the tentative structure of 6-(3,3-dimethylallyl)-5-methoxy-2,2-dimethyl-2H-benzo[1,2-b:3,4-b′]dipyran-8-one on the basis of PMR analysis using the lanthanide shift reagent Eu(fod)₃.     

Mixed-ligand lanthanide complexes. IV. Paramagnetic shift induced by eu(fod)3pz and Yb(fod)3PZ in the NMR spectrum of di-l-butyl ether

Two pyrazole adducts of Ln(fod)₃, Eu(fod)₃pz and Yb(fod)₃pz have been scanned as potential NMR shift reagents using di-l-butyl ether. Di-l-butyl ether is a very weak donor; even then the complexes associate with the base and induce large isotropic hyperfine shifts in the resonance frequencies of the magnetic substrate nuclei. The t-butyl resonances of the complexes are strongly shifted (in the opposite direction) in the presence of the substrate. This observation together with the fact that the spectra of the substrate are unaffected by addition of any amount of the complexes are taken as evidence that the specific coordination of the complexes to the substrate occurs through the agency of oxygen lone-pair electrons.     

1H NMR studies of drugs with achiral and chiral lanthanide shift reagents: Applications to the anticonvulsant pheneturide

The anticonvulsant pheneturide, PNT, has been studied by 300 MHz ¹H NMR in CDCl₃ at ambient temperatures with the achiral lanthanide shift reagent (LSR) Eu(FOD)₃, and with the chiral LSR, Eu(HFC)₃. Both LSRs produced spectral simplification of the aryl proton signal region, and substantial lanthanide‐induced shifts (LIS). With added Eu(HFC)₃, enantiomeric shift differences (ΔΔδ) were induced for most nuclei of PNT, indicating substantial potential for direct determination of enantiomeric excess. Valley heights between corresponding signals in the PNT enantiomers as low as 3.6% were achieved for the meta resonance. Least squares line‐fitting was applied to the variation of chemical shift vs. [LSR]/[PNT] molar ratios for both LSRs. Tentative assignments were made for the NH absorptions based on two‐dimensional NMR (COSY45), as well as their relative magnitudes of LIS, ΔΔδ, and lanthanide‐induced line broadening. The PNT conformation reported in the crystal is believed to be retained in solution with added LSR. The relative senses of magnetic nonequivalence were found to be the same among the three sets of aryl protons, and among the three kinds of protons in the ethyl moiety, with high levels of added chiral LSR, using 2D NMR. Chirality 11:529–535, 1999. © 1999 Wiley‐Liss, Inc.     

Determination of Stereochemistry at C-16 of Dihydrogibberellin A1 Methyl Ester (Methyl Tetrahyclrogibberellate) and Its 16-Epimer

Stereochemistry at C–16 of dihydrogibberellin A₁ methyl ester (methyl tetrahydrogib-berellate, III) and its 16-epimer was elucidated. NMR analysis employing a shift reagent, Eu(thd)₃ or Eu(fod)₃, was found to be very effective for settling this stereochemical problem.     

The octant rule VIII.1 Variable temperature circular dichroism spectra of α-methyl- and methoxyl-substituted 5α-cholestan-2- and -3-ones

2α- and 2β-Methyl- and methoxy-5α-cholestan-3-ones and 3α- and 3β-methyl- and methoxy-5α-cholestan-2-ones have been synthesized and their variable temperature circular dichroism spectra obtained and analyzed. Rotatory strength (R) values for α-axial and equatorial CH₃ and OCH₃ groups are determined by difference measurements with the parent ketone. The (small) equatorial CH₃ R-values do not consistently follow the Octant Rule. Axial OCH₃ groups do not obey the Octant Rule (“anti-octant” behavior) and impose a bathochromic shift on the C = 0 n-π¹ transition. Equatorial OCH₃ groups do not consistently follow octant or “anti-octant” behavior.     

The crystal structure of d-glucose 6-(sodium hydrogen-phosphate)

The title compound, when recrystallised from water, is monoclinic, space group P2₁, with a = 5.774(4), b = 7.189(5), c = 12.69(1) Å, β = 106.66(5)°, and Z = 2. The crystal structure was determined from three-dimensional X-ray diffraction data taken on an automatic diffractometer with CuKα, and refined by least-squares techniques to R = 0.034 for 977 reflexions. The pyranose ring adopts the ⁴C₁ conformation. The conformation about the exocyclic C-5-C-6 bond is gauche-trans [the torsion angles O-6-C-6-C-5-O-5 and O-6-C-6-C-5-C-4 are 64.2(8) and ?175.6(7)°, respectively], which is significantly different from the gauche-gauche geometry in d-glucose 6-(barium phosphate). The phosphate ester bond, P-O-6, is 1.584(3) Å. All of the oxygen-bonded hydrogen atoms are involved in intermolecular hydrogen-bonds.     

A new phenylpropanoid and an alkylglycoside from Piper retrofractum leaves with their antioxidant and α-glucosidase inhibitory activity

Two new compounds, piperoside (1) and isoheptanol 2(S)-O-β-d-xylopyranosyl (1→6)-O-β-d-glucopyranoside (11), along with 10 known compounds 3,4-dihydroxyallylbenzene (2), 1,2-di-O-β-d-glucopyranosyl-4-allylbenzene (3), tachioside (4), benzyl-O-β-d-glucopyranoside (5), icariside F₂ (6), dihydrovomifoliol-3′-O-β-d-glucopyranoside (7), isopropyl O-β-d-glucopyranoside (8), isopropyl primeveroside (9), n-butyl O-β-d-glucopyranoside (10), isoheptanol 2(S)-O-β-d-apiofuranosyl-(1→6)-O-β-d-glucopyranoside (12), were isolated from the leaves of Piper retrofractum. Their structures were determined from 1D-NMR, 2D-NMR, and HR-ESI-MS spectral, a modified Mosher’s method, and comparisons with previous reports. All of the isolated compounds showed modest α-glucosidase inhibitory (4.60 ± 1.74% to 11.97 ± 3.30%) and antioxidant activities under the tested conditions.     

The crystal and molecular structure of O-α-D-mannopyranosyl-(1→3)-O-β-D-mannopyranosyl-(1→4)-2-acetamido-2-deoxy-α-D-glucopyranose

The crystal structure of α-D-Manp-(1→3)-β-D-Manp-(1→4)-α-D-GlcNAcp has been determined by the direct method using the multi-solution, tangent formula, and “magic integer” procedures. The space group is P2₂, and 2 molecules are in the unit cell with a  9.894 (5), b  10.372 (6), c  11.816 (6) Å, and β  95.03° (6). The structure was refined to R 0.059 for 2099 reflections measured with Mo Kα radiation. Difference synthesis showed all the hydrogen atoms, and indicated a partial (～30%) substitution of the α-anomer molecules by the β-anomer molecules. The D-mannopyranose and the D-glucopyranose have the normal ⁴C₁ conformation; an intramolecular hydrogen-bond O-3″-H.....O-5′ (2.703 Å) stabilises the GlcNAc in relation to β-D-mannopyranose.     

Flavonoids from Rhamnus alaternus L. (Rhamnaceae): Kaempferol 3-O-β-isorhamninoside and rhamnocitrin 3-O-β-isorhamninoside protect against DNA damage in human lymphoblastoid cell and enhance antioxidant activity

Kaempferol 3-O-β-isorhamninoside (K3O-ir) and rhamnocitrin 3-O-β-isorhamninoside (R3O-ir), were isolated from Rhamnus alaternus L leaves. The genotoxic and antigenotoxic properties of these compounds were investigated by assessing the induction and inhibition of the genotoxicity induced by the direct-acting mutagen, hydrogen peroxide (H₂O₂), using the “comet assay.” K3O-ir and R3O-ir exhibited a preventive effect against H₂O₂ induced DNA damages in human lymphoblastoid TK6 cells and its derivative the p53 deficient cell line NH32.These two flavonoids, also investigated for their antioxidant capacities, using different antioxidant tests, such as: Cuprac, Frap and reducing power assays, revealed significant activity through their capacities to transfer electrons.     

Binding of thyroid hormone by erythrocyte cytoplasmic proteins.

Characteristics of iodothyronine-binding to dog erythrocyte cytosol proteins are described. Half-time of association of both thyroxine (T₄) and triiodothyronine (T₃) is 60 min and equilibrium is achieved at 120 min (20°C). Binding is enhanced at 37°C compared to 20°C. T₄ and T₃ binding capacities of the cytosol are 10 and 5 picomoles/mg cytosol protein, respectively. Gel filtration (G-100) reveals 3 protein fractions that dissociably bind both T₄ and T₃. Quantitative and qualitative differences distinguish the erythrocyte cytosol “receptor” proteins from those previously described in other dog tissues. The erythrocyte is a model for studying functions of cytosol “receptors” for iodothyronines.     

The human LT system. IV. Studies on the large MW LT complex class: association of these molecules with specific antigen binding receptor(s) in vitro.

The present studies demonstrate that a portion of lymphotoxin (LT) cell-lytic activity present in supernatants from: 1) lectin (Con A, PHA) stimulated nonimmune; or 2) antigen (soluble or cellular) stimulated immune human lymphocytes in vitro, is associated with immunoglobulin (Ig) or “Ig-like” receptor molecule(s). This concept was supported by three findings: 1) LT activity in these supernatants was partially inhibited by heterologous anti-human (IgG) Fab′₂ antisera; 2) LT activity present in soluble antigen stimulated immune human lymphocyte supernatants could specifically bind to and be eluted from Sepharose 4B columns to which the specific stimulating antigen was covalently attached; and 3) LT activity present in primary one-way mixed lymphocyte culture (MLC) supernatants could be removed by absorption on the specific stimulator cells. The amount of total LT activity found to be associated with “Ig” in these supernatants was variable, but ranged from 5 to 20% in lectin stimulated cell supernatants to 20 to 50% in antigen or MLC stimulated supernatants. Physical-chemical studies on the molecular weight class of LT molecules having reactivity with anti-Fab′₂ sera, as well as antigen binding capacity, revealed these properties reside in the large (>200,000) MW LT class, termed complex. The nature and biological significance of these “antigen specific” LT complexes, as they relate to mechanisms of cytotoxicity in vitro, will be discussed.     

Nucleic acid binding properties of Escherichia coli ribosomal protein S1. I. Structure and interactions of binding site I.

Escherichia coli ribosomal protein S1 plays a central role in initiation of protein synthesis, perhaps via participation in the binding of messenger RNA to the ribosome. S1 protein has two nucleic acid binding sites with very different properties: site I binds either single-stranded DNA or RNA, while site II binds single-stranded RNA only (Draper et al., 1977). The nucleic acid binding properties of these sites have been explored using the quenching of intrinsic protein fluorescence which results from binding of oligo- and polynucleotides, and are reported in this and the accompanying paper (Draper &; von Hippel, 1978).Site I has been studied primarily using DNA oligomers and polymers, and has been found to have the following properties. (1) The intrinsic binding constant (K) of site I for poly(dA) and poly(dC) is ~3 × 10⁶m^?1 at 0.12 m-Na⁺, and the site size (n, the number of nucleotide residues covered per S1 bound) is 5.1 ± 1.0 residues. (2) Binding of site I to polynucleotides is non-co-operative. (3) The K value for binding of S1 to single-stranded polynucleotides is ~10³ larger than K for binding to double-stranded polynucleotides, meaning that S1 (via site I) is a potential “melting” or “double-helix destabilizing” protein. (4) The dependence of log K on log [Na⁺] is linear, and analysis of the data according to Record et al. (1976) shows that two basic residues in site I form charge-charge interactions with two DNA phosphates. In addition, a major part of the binding free energy of site I with the nucleic acid chain appears to involve non-electrostatic interactions. (5) Oligonucleotides bound in site II somewhat weaken the binding affinity of site I. (6) Binding affin is virtually independent of base and sugar composition of the nucleic acid ligand; in fact, the total absence of the base appears to have little effect on the binding, since the association constant for 2′-deoxyribose 5′-phosphate is approximately the same as that for dAMP or dCMP. (7) Two molecules of d(ApA) can bind to site I, suggesting the presence of two “subsites” within site I. (8) Iodide quenching experiments with S1-oligonucleotide complexes show differential exposure of tryptophans in and near the subsites of site I, depending upon whether neither, one, or both subsites are complexed with an oligonucleotide.     

Isolation of dihydroxylupene and dihydroxylupane from the bark of Lawsonia inermis

Two pentacyclic triterpenes isolated from the bark of henna were identified as 3β, 30-dihydroxylup- 20(29)-ene (hennadiol), and (20S)-3β, 30-dihydroxylupane. The assignment of the C-20 configuration in the latter compound was supported by the analysis of Eu(fod)₃-induced ¹H NMR chemical shifts in the two C-20 epimers synthesized from lupeol.     

Conformational analysis of peracetylated hexononitriles

The conformations of six peracetylated hexononitriles in solution have been investigated by Fourier-transform, proton n.m.r. spectroscopy at 90 MHz, with iterative analysis and simulation of many of the spectra. The conformation of tetra-O-acetyl-L-arabinononitrile has been re-examined by the same methods. A shift reagent [Eu(fod)₃-d₃₀] and spectra at 220 MHz were used to improve spectral dispersion, where necessary. For practically all of the derivatives studied, the vicinal, proton-proton coupling-constants are consistent with a zigzag conformation in which the cyano group lies in the plane of the other carbon atoms of the chain, unless this conformation contains a parallel 1,3-interaction of substituents. Other conformers that are also consistent with the coupling constants observed are discussed, including rotamers about chain-terminal, carbon-carbon bonds.     

Configurational assignments of C-nitromethyl-C-hydroxy branched-chain carbohydrate derivatives by use of a europium shift-reagent in 1 H-N.M.R. spectroscopy

Configurational assignments for the tertiary alcoholic centers of four branched-chain 3-C-nitromethylglycopyranosides, namely, methyl 2-benzamido-4,6-O-benzylidene-2-deoxy-3-C-nitromethyl-α-D-allopyranoside (1), benzyl 2-acetamido-4,6-O-benzylidene-2-deoxy-3-C-nitromethyl-α-D-glucopyranoside (4), benzyl 2-acetamido-4,6-O-benzylidene-2-deoxy-3-C-nitromethyl-α-D-allopyranoside (5), and methyl 4,6-O-benzylidene-3-C-nitromethyl-2-O-p-tolylsulfonyl-α-D-glucopyranoside (8), were made on the basis of the downfield chemical shifts of their identifiable protons per molar equivalent of added Eu(fod)₃, as compared with those of model compounds, of known configuration, having a close structural relationship. In some cases, the assignments were corroborated by the position of the acetyl resonances in the unshifted 60-MHz p.m.r. spectra of the corresponding O-acetyl derivatives.     

Some properties of the redox components of cytochrome c oxidase and their interactions.

The electron paramagnetic resonance (epr) properties of cytochrome c oxidase have been examined with special attention to the effect of added ligands and of interactions between the redox components. The fully oxidized preparations have a very small g6 signal which increases greatly as the redox potential is made more negative, a process exactly paralleling the disappearance of the g3 signal. The potential for half appearance or disappearance (E_m), respectively, is 380 mV at pH 7.0 and 300 mV at pH 8.5. This identifies the changes as accompanying reduction of cytochrome a₃ because the E_m of the “invisible copper” is 340 mV and pH independent. Nitric oxide (NO) binds reduced cytochrome a₃ to form a paramagnetic species. This resulting epr signal is strongly dependent on the redox state of cytochrome a, another expression of heme-heme interaction in cytochrome oxidase. The NO compound is also unique in that under the appropriate conditions three of the four redox components (cytochrome a₃, cytochrome a, and the “visible” copper) are epr active. In potentiometric titrations in the presence of azide the formation of the azide compound responsible for the g2.9 signal appears to require reduction of both cytochrome a₃ and the “invisible copper.” An internal sulfur compound is present which, at alkaline pH values, can bind the heme responsible for the g6 signal and change it to a low-spin sulfur compound with a signal at approximately g2.6. Evidence is also presented for the cytochrome c oxidase in situ being an equilibrium mixture of two different conformational states.     

Different rotamer populations around the C-5C-6 bond for α- and β-d-galactopyranosides through the combined interaction of the gauche and anomeric effects: A 300-MHz 1H-n.m.r. and mndo study

A 300-MHz ¹H-n.m.r. study of methyl 2,3,4-tri-O-methyl-ga- (1) and β-d-galactopyranoside-6-(dimethyl phosphate) (3), using various solvents, shows that the gauche (gg) rotamer populations about the C-5C-6 bond are are the same in all solvents, whereas those of the gauche(trans) (gt) and trans(gauche) (tg, O-5 and O-6 trans) rotamers are solvent dependent. The tg population increases with decreasing polarity of the solvent, which is attributed to an increased electrostatic repulsion between O-5 and O-6 in apolar solvents. The tg population of 3 is larger than that of 1 and the same difference is observed in the corresponding compounds (2 and 4) which have a trigonal-bipyramidal five-coördinated phosphorus (P^v) at position 6 and which have a higher electron density at O-6. These differences in rotamer populations are due to an effect additional to that of the coulombic effect between O-5 and O-6. That these differences are caused by a combination of the gauche and anomeric effects is supported by the finding that the tg population increases with increasing pK_a of the group at C-1. The results of the n.m.r. measurements (in CCl₄) are reproduced fairly accurately by MNDO calculations on model systems. The solvent dependence of the rotamer population around the C-5ẋC-6 bond is a good criterion for the assignment of the H-6S,6R resonances since, for galactopyranosides, J_5,6S increases and J_5,6R decreases as the polarity of the solvent decreases.