Inactivation of the protease inhibitor phenylmethylsulfonyl fluoride in buffers.

Since the original work by Sweeley et al. (1) the silylation and subsequent gas-liquid chromatography of simple sugars has been well documented (2–5). The silylation of their biochemically important derivatives, notably sugar phosphates, has proven more difficult. Wells et al. (6) premethylated the phosphate with diazomethane in methanol before silylating the sugar group with the usual reagents [pyridine, hexamethyldisilazane (HMDS), and trimethylchlorosilane (TMCS)], Hashizume and Sasaki (7) refluxed the sugar phosphates in the reaction mixture for 1 hr to effect complete silylation, while Eisenberg and Bolden (8) achieved similar results by heating in a sealed vial at 100°C for 10 min. The latter researchers noted that glucose 1-phosphate tended to decompose under their conditions to give one major and two minor peaks. Horning et al. (9) and, later, Sherman et al. (10) used bis(trimethylsilyl)acetamide (BSA) to silylate sugar phosphates, but Pierce (11) has noted that BSA tends to give inconsistent silylation of simple sugars and we have also noted this in our work.In 1969, Ellis (12) reported on the use of a silylation system using dimethylsuifoxide (DMSO) or dimethylformamide (DMF) as the reaction solvent rather than pyridine. The silylated derivatives are not soluble in either of these solvents and they form a second, upper liquid layer (in 10 min in the case of DMSO, 18 hr for DMF). The silylated sample is thus concentrated and this avoids the necessity of removing the solvent [with its attendant problems (10)] after silylation.This paper reports a modification and extension of the silylation system described by Ellis which allows rapid, quantitative silylation of sugars and sugar phosphates at room temperature, i.e., the addition of cyclohexane to the silylation mixture to promote the silylation of sugar phosphates and other biologically important acids. Also reported is the first use of SE-52 stationary liquid phase for the glc of sugar phosphates.     

The determination of methionine in proteins by gas-liquid chromatography.

Intact methionine residues in proteins were rapidly and precisely determined by measuring methyl thiocyanate released during the reaction with CNBr and separated by g.l.c. Conditions for the reaction and for chromatography on columns of Porapak P-S are described. The recovery of methyl thiocyanate from several methionine derivatives and analogues were examined. Carbamoylmethionine was adopted as a stable primary standard and ethyl thiocyanate as internal standard. The measured methionine content of several isolated proteins was close to the theoretical value indicated by previous work and the results for these and a range of food proteins agreed well with results obtained by ion-exchange chromatography after performic acid oxidation. Since CNBr does not react with methionine sulphoxide and a preliminary hydrolysis is not required, the method discriminates between methionine and any methionine sulphoxide that may be present. It could be useful in studies on the nutritional availability of methionine in processed foods.     

Mass-spectral fragmentation of methyl 2,3,4-tri-O-methyl-α-D-glucopyranosiduronamide and its analytical application

Fragmentation pathways for methyl 2,3,4-tri-O-methyl-α-D-glucopyranosiduronamide are proposed, based on 70- and 12-eV spectra of the compound specifically labelled with CD₃ and ND₂ groups. The presence of the NH₂ group in the molecule gives rise to new fragmentation series. The number and positions of CD₃ groups can be unequivocally determined from the mass spectra. Partially methylated derivatives of hexuronic acids, obtained by methylation analysis of hexuronic acid-containing substances, can be identified by exhaustive trideuteriomethylation and conversion into readily obtainable crystalline amides.     

Identification of ketoses by use of their peracetylated oxime derivatives: A G.L.C.-M.S. approach

A method based on peracetylated oxime (PAKO) derivatives has been developed for rapid g.l.c.-m.s. survey of ketoses. This derivatization procedure (and the chromatographic analysis of these derivatives) is identical to one previously employed to identify aldoses by means of peracetylated aldononitrile (PAAN) derivatives. The production of chemically different derivatives from the aldoses and ketoses by the same derivatization procedure greatly simplifies the chromatographic separation of the derivatives of the ketoses from those of the aldoses, and also results in distinctively different, mass-spectral fragmentation-pathways for the two sets of derivatives. Both the electron-impact (e.i.) and ammonia chemical-ionization (c.i.) mass spectra of PAKO derivatives have been examined. Extensive differences between the fragmentation-pathways of the PAAN and the PAKO derivatives have been observed both by e.i.m.s. and ammonia c.i.m.s. The g.l.c.-m.s. of these PAKO derivatives, in conjunction with various, isotopic variants of the derivatization process, can yield extensive structural information with regard to the starting saccharides associated with the known, or unknown, g.l.c. peaks. The g.l.c. and mass-spectral properties of highly O-methylated PAKO derivatives of d-fructose are compared, and contrasted, to those of the PAKO derivatives of non-O-methylated saccharides. The chromatographic properties of derivatives of oligosaccharides that result from the PAAN-PAKO derivatization procedure have also been studied.     

Identification of ecdysonoic acid and 20-hydroxyecdysonoic acid isolated from developing eggs of Schistocerca gregaria and pupae of Spodoptera littoralis.

Ecdysonoic acid and 20-hydroxyecdysonoic acid have been purified from developing eggs of the desert locust, Schistocerca gregaria, by high performance liquid chromatography (h.p.l.c.), and their structures were determined by p.m.r. spectroscopy and fast atom bombardment mass spectrometry of the free and methyl ester derivatives. 20-Hydroxyecdysonoic acid was also characterized from Spodoptera littoralis pupae. The occurrence of both 20-hydroxyecdysonoic acid and ecdysonoic acid in Sp. littoralis pupae was also established by h.p.l.c. comparison of the 3H-labelled acids formed from [3H]ecdysone and of their methyl esters with the corresponding substances from Sch. gregaria. The significance of ecdysteroid acids as products of ecdysteroid inactivation is discussed.     

Methanolysis of D-galacturonic acid: dimethyl acetals

Dimethyl acetals of D-galacturono-6,3-lactone and methyl D-galacturonate have been detected during methanolysis of D-galacturonic acid. The products of methanolysis were studied by ion-exchange chromatography and by g.l.c. of the trimethylsilyl (TMS) derivatives. Structural determinations were made from the mass spectra of the TMS derivatives. The course of methanolysis was monitored by g.l.c.     

A partial modification of the carbazole method of Bitter and Muir for quantitation of hexuronic acids.

The carbazole method of T. Bitter and H. M. Muir (1962, Anal. Biochem.4, 330–334)for quantitation of hexuronic acids was modified partially. In this modification (procedure g), 0.2 m anhydrous sodium tetraborate was used instead of 0.025 m sodium tetraborate decahydrate. The color intensity of d-glucuronolactone was slightly diminished by this modification, however, that of l-iduronolactone significantly increased. Thus, the difference in color intensity between d-glucuronolactone and l-iduronolactone became very small. When evaluated by procedure g, the hexuronic acid content of dermatan sulfate was comparable to that of chondroitin sulfate A.     

Determination of the linkages in some methylated,sialic acid-containing,meningococcal polysaccharides by mass spectrometry

The application of gas-liquid chromatography-mass spectrometric (g.l.c.-m.s.) analysis to a number of sialic acid-containing polysaccharides of meningococcal origin has been studied. Methylation of these polysaccharides by the Hakomori conditions resulted in both O- and N-methylation. Methanolysis of the methylated polysaccharides from serogroup C [(2→9)-linked], colominic acid [(2→8)-linked], and serogroups Y and W-135 [both (1→4)-linked], yielded the respective 4,7,8,4,7,9-, and 7,8,9-tri-O-methyl derivatives of methyl N-acetyl-N-methyl-β-D-neuraminate methyl glycoside. As model compounds, methyl N-acetyl-4,7,8,9-tetra-O-methyl-α-D-neuraminate methyl glycoside and its N-methyl derivative were also synthesized. All of the methylated derivatives could be identified on the basis of their typical fragmentation-patterns, indicating that this method is applicable to the determination of the position of linkages to sialic acid residues in biopolymers.     

T.l.c. enantiomeric separation of amino acids

Resolution of enantiomers is very important particularly in the fields of asymmetric synthesis, mechanistic studies, geochronology, studies of structure-function relationship of proteins, pharmacology, and medicine. Various chromatographic methods have replaced the classical fractional crystallization, seeding and enzymatic procedures. Of these, t.l.c. provides a direct, simple, and inexpensive method for resolution of enantiomers of amino acids and their derivatives. Ligand exchange, ion exchange, and molecular inclusion complexation have been the basis of t.l.c. resolution of enantiomers of amino acids and their derivatives. The innovation of new plate types, and methods of development and detection have renewed interest in the direct resolution of enantiomers of amino acids, their derivatives and a variety of other compounds by t.l.c. The present report provides an overview of some of the more recent approaches to the direct t.l.c. resolution of amino acids and their derivatives together with special advantages and scope of t.l.c.     

Uptake of N-acetylneuraminic acid by Escherichia coli K-235. Biochemical characterization of the transport system.

Kinetic measurement of the uptake of N-acetyl[4,5,6,7,8,9-14C]neuraminic acid by Escherichia coli K-235 was carried out in vivo at 37 degrees C in 0.1 M-Tris/maleate buffer, pH 7.0. Under these conditions uptake was linear for at least 30 min and the Km calculated for sialic acid was 30 microM. The transport system was osmotic-shock-sensitive and was strongly inhibited by uncouplers of oxidative phosphorylation [2,4-dinitrophenol (100%); NaN3 (66%]) and by the metabolic inhibitors KCN (84%) and sodium arsenate (76%). The thiol-containing compounds mercaptoethanol, glutathione, cysteine, dithiothreitol and cysteine had no significant effect on the sialic acid-transport rate, whereas the thiol-modifying reagents N-ethylmaleimide, iodoacetate and p-chloromercuribenzoate almost completely blocked (greater than 94%) the uptake of this N-acetyl-sugar. N-Acetylglucosamine inhibited non-competitively the transport of N-acetylneuraminic acid, whereas other carbohydrates (hexoses, pentoses, hexitols, hexuronic acids, disaccharides, trisaccharides) and N-acetyl-sugars or amino acid derivatives (N-acetylmannosamine, N-acetylcysteine, N-acetylproline and N-acetylglutamic acid) did not have any effect. Surprisingly, L-methionine and its non-sulphur analogue L-norleucine partially blocked the transport of this sugar (50%), whereas D-methionine, D-norleucine, several L-methionine derivatives (L-methionine methyl ester, L-methionine ethyl ester, L-methionine sulphoxide) and other amino acids did not affect sialic acid uptake. The N-acetylneuraminic acid-transport system is induced by sialic acid and is strictly regulated by the carbon source used for E. coli growth, arabinose, lactose, glucose, fructose and glucosamine being the carbohydrates that cause the greatest repressions in this system. Addition of cyclic AMP to the culture broth reversed the glucose effect, indicating that the N-acetylneuraminic acid-uptake system is under catabolic regulation. Protein synthesis is not needed for sialic acid transport.     

Determination of double bond positions in fatty acids with conjugated double bonds

The positions of the double bonds in fatty acids with conjugated double bonds may be determined by mass spectrometry of the methyl esters of their trimethylsilyl ether derivatives obtained by hydroxylation of the double bonds followed by silylation of the resulting polyols. The method has been applied to trans-9,trans-11- and trans-10, trans-12-octadecadienoic acid.     

Michael Heidelberger as a Carbohydrate Chemist

The deoxyaldaric acids corresponding in structure to the 3-deoxy-2-C-(hydroxymethyl)aldonic (isosaccharinic) acids have been identified as products of treatment of various carbohydrates with alkali and oxygen-alkali. The structures of the acids were determined from the mass spectra of their Me₃Si derivatives on the basis of previously known, specific fragmentation reactions. The g.l.c.-m.s. technique was used, and g.l.c. retention data are given. The identified species are 2-deoxy-3-C-(hydroxymethyl)tetraric, 3-deoxy-2-C-hydroxymethyl-erythro-pentaric, 3-deoxy-2-C-hydroxymethyl-threo-pentaric, 2-methyltartronic, 2-(2-hydroxyethyl)tartronic, and 2-(2,3-dihydroxypropyl)tartronic acids. Their formation from 4-O-substituted uronic and ulosonic acids is briefly discussed.     

2-C-carboxyaldoses and aldonic acids from cellobiose,maltose, and 4-O-methyl-d-glucose with 2-anthraquinone-sulfonic acid

Cellobiose, maltose, and 4-O-methyl-d-glucose were treated with 0.1–20mm 2-anthraquinonesulfonic acid in 0.1m sodium hydroxide at 40°. The hydroxy carboxylic acids formed were separated by ion-exchange, and analyzed by g.l.c.-m.s. as their per(trimethylsilyl) derivatives. The acidic oxidation products of cellobiose were further fractionated into aldonic acids and carboxylaldoses by ion-exchange chromatography. The isolated carboxyaldoses were reduced with sodium borohydride, and then analyzed by g.l.c.-m.s. before and after hydrolysis. The O-d-glucosyl- and O-methyl-substituted products of the sugars consisted of erythronic, arabinonic, ribonic, gluconic, and mannonic acids, in addition to 2-C-carboxypentoses. The nonsubstituted products of the reducing d-glucose unit were formic, glycolic, 2-deoxytetronic, and 3-deoxypentonic acids, and 2-C-carboxy-3-deoxypentoses.     

Non-oxidative and oxidative alkaline degradation of pectic acid

As alkaline degradation products of pectic acid, 6 hydroxymonocarboxylic, 16 dicarboxylic, and 2 tricarboxylic acids were identified by g.l.c.-m.s. as their trimethylsilyl derivatives. In the absence of oxygen, the most abundant degradation products are 3-deoxy-2-C-(hydroxymethyl)pentaric, 2,3-dideoxypentaric, 2-deoxy-3-C-methyltetraric, malic, and 2¹,4-anhydro-3-deoxy-2-C-(hydroxymethyl)pentaric acids, whereas, in the presence of oxygen, glycolic, oxalic, malic, 3-deoxypentaric, and 2-C-carboxy-3-deoxypentaric acids preponderate. The routes of formation of these acids show many similarities with those encountered in the alkaline degradation of cellulose.     

Synthesis and anti-HSV-1 activity of quinolonic acyclovir analogues.

Several 1-[(2-hydroxy-ethoxy)methyl]-3-carbethoxy-4(1H)quinolones (2a-l) and l-[(2-hydroxy-ethoxy)methyl]-4(1H)quinolone-3-carboxylic acids (3a-j and 3l) were synthesized and 2a-j, 2l and 3a-j, 3l were evaluated against herpes simplex virus type 1 (HSV-1), employing a one-pot reaction: silylation of the desired quinolone (BSTFA 1% TMCS) followed by equimolar amount addition of 1,3-dioxolane, chlorotrimethylsilane and KI, at room temperature. The acyclonucleosides 2a-l were obtained in 40-77% yields. The esters 2a-j and 2l were subsequently converted into the corresponding hydroxyacids 3 in 40-70% yields. Attempts of hydrolysis of 2k produced only a mixture of degradation products. Antiviral activity of 2 and 3 on HSV-1 virus infection was assessed by the virus yield assay. Except for compounds 2i and 3e, the acyclonucleosides were found to reduce the virus yield by 70-99% at the concentration of 50 microM, being the acids, in general, more effective inhibitors than their corresponding esters. Compounds 3j and 2d exhibited antiviral activity against HSV-1 virus with EC50 of 0.7+/-0.04 and 0.8+/-0.09 microM, respectively. Both compounds were not toxic towards the Vero cell line.     

Rapeseed hull pectin

A pectin isolated from rapeseed, hulls by extraction with aqueous ammonium oxalate, had a degree of esterification of 83% and contained residues of hexuronic (mainly D-galacturonic) acid (76%), D-galactose (2–3%), L-arabinose (8–9%), D-xylose (2%), L-rhamnose (2–3%), and L-fucose (1%). Partial acid hydrolysis of the derived pectic acid furnished 2-O-(α-D-galactopyranosyluronic acid)-L-rhamnose, 4-O-(α-D-galactopyranosyluronic acid)-D-galacturonic acid and the polymer-homologous tri- and tetrasaccharides, and 4-O-(glucopyranosyluronic acid)-L-fucose. The cleavage products from the methylated pectin were examined by g.l.c. and the partially methylated alditol acetates from the methylated carboxyl-reduced polysaccharide by g.l.c.-mass spectrometry. Parallel methylation studies on lemon-peel pectin have established a close similarity between the two pectins.     

Identification of methyl (methylO-acetyl-O-methylhexopyranosid)uronates by mass spectrometry

Fragmentation of methyl (methylO-acetyl-O-methyl-α-d-gluco- and -galactopyranosid, uronates has been studied at 70 and 12 eV. At 12 eV, the production of ions resulting from secondary and further processes is greatly diminished and the spectra are simpler and easier to interpret. The energy required for the elimination of acetic acid and ketene has been calculated from the ion-appearance potentials. The number and location of methyl groups in methyl (methylO-acetyl-O-methyl-hexopyranosid)uronates can be determined. The procedure is particularly suitable for g.l.c.-m.s. of the uronic acid portion of methanolysates of methylated biopolymers and other substances containing uronic acids. From the presence or absence of peaks for molecular ions in the 12-eV spectra,gluco andgalacto isomers which do not contain a methoxyl group at C-4 can be distinguished. The synthesis of methyl (methyl 2,3-di-O-methyl-α-d-galactopyranosid)uronate is also described.     

Pharmacokinetics of triclabendazole in rabbits

1.Pharmacokinetic profiles of triclabendazole (TCBZ) following intravenous (i.v.) and oral administration of the drug in rabbits were carried out.2. In normal rabbits, TCBZ was metabolized rapidly to its sulphoxide (TCBZ-SO) and sulphone (TCBZ-SO₂) derivatives following administration, with undetectable concentrations of unchanged TCBZ in the plasma of the treated animals at any time (detection limit, 10 ng/ml).3. The disposition kinetics of this drug in rabbits can be described by a two-compartment open model.4. Mean peak concentrations in plasma of TCBZ-SO and TCBZ-SO₂ of 12.41 μg/ml and 9.5 μg/ml occurred 7.5 and 9.5 hr after oral administration, respectively.5. Both metabolites were eliminated slowly from plasma with elimination half-lives of 16.86 hr for the sulphoxide and 13 hr for the sulphone.6. The area under the plasma concentration versus time curve (AUC) was 240 mg hr/l for the sulphoxide, higher than that found for the sulphone, 185 g hr/l.     

Structures of polysaccharides and oligosaccharides of some Gram-negative marine Proteobacteria

The chemical structures of polysaccharides and LPS core oligosaccharides, isolated from various Gram-negative marine bacteria from the genera Pseudoalteromonas and Shewanella belonging to the Alteromonadaceae family and gamma-subclass of Proteobacteria, are reviewed. The polysaccharides are distinguished by the acidic character (e.g., due to the presence of hexuronic and aldulosonic acids and their derivatives) and the occurrence of unusual sugars, including N-acyl derivatives of 6-deoxyamino sugars, such as N-acetyl-D-quinovosamine, N-acetyl-L-fucosamine and N-acetyl-6-deoxy-L-talosamine, and higher sugars like 2,6-dideoxy-2-acetamido-4-C-(3'-carboxamide-2',2'-dihydroxypropyl)-D-galactopyranose (shewanellose). Many constituent sugars have various uncommon non-sugar substituents, such as alanine, formic, lactic and hydroxybutyric acids, sulfate, phosphate, and 2-aminopropane-1,3-diol.     

Partially ethylated alditol acetates as derivatives for elucidation of the glycosyl linkage-composition of polysaccharides

The use of partially ethylated alditol acetates for the analysis by gas-liquid chromatography of the components of polysaccharides, and the glycosidic linkages of these components, is described. The derivatives are prepared by procedures analogous to those for the synthesis of partially methylated alditol acetates. Derivatization requires two successive ethylations and more-strenuous conditions of hydrolysis and reduction than for the methyl analogs. The partially ethylated alditol acetates are formed in nearly quantitative yield and give single, sharp peaks on gas chromatography. Retention-time data, relative to two internal standards, are given for 79 glycosidic linkage-isomers of mannose, galactose, glucose, arabinose, xylose, rhamnose, and fucose, on four g.l.c. columns. One of these columns is a newly developed, highly polar, capillary column. Direct comparisons of these retention times to retention times of partially methylated alditol acetates are made. The ethyl analogs are eluted sooner that the corresponding methyl derivatives, and the amount of this shift in elution time is dependent upon the number of alkyl groups in the derivative. This change in elution time allows separation of many polysaccharide components by g.l.c. that are not separable as their partially methylated alditol acetates. Others, separated as their O-methyl derivatives, are coeluted as their partially ethylated alditol acetates. The two derivatives thus provide excellent complementary procedures because of their differential chromatographic separation and because of the similarity of their preparation.