Electron microscopy of G-banded human mitotic chromosomes

Trypsin-treated human metaphase chromosomes stained with Giemsa and uranyl acetate showed clear, reproducible band structures under the transmission electron microscope (TEM). The banding pattern observed with TEM corresponded very closely to the G-band pattern visualized by light microscopy. The TEM images were used for karyotype analyses. Trypsin-treated chromosomes stained with uranyl acetate alone also showed clear G-bands under TEM. Shadow casting in addition to uranyl acetate staining revealed more structural detail of the chromosomes. Chromosome fibers, 200 Å–300 Å in diameter, were observed in the interband regions. Most chromosomes showed the major G-bands under the higher TEM magnification wit0out any trypsin treatment.     

The G-banded prophase chromosomes of man.

Using a simple G-banding technique developed in our laboratory, analysis of late prophases enables the visualization of approximately 1000 bands in the haploid set of human chromosomes. These bands have been classified according to the recommendations of the Paris Conference. The increased resolution offered by this technique is likely to be useful in the study of the structure and molecular organization of chromosomes and in identifying minute chromosome defects in birth defects and neoplasia.     

High resolution G-banded chromosomes of the mouse

High resolution G-banded mouse chromosomes were prepared using an actinomycin D and acridine orange pretreatment protocol, resulting in late prophase mouse chromosomes which reveal over twice the number of bands as compared with mid metaphase. These elongated chromosomes, described here in detail and used to construct a precise schematic representation of the late prophase banding patterns, should be generally useful in high resolution mouse chromosome analysis.     

The G-banded chromosomes of Roosevelt's muntjac, Muntiacus rooseveltorum

The chromosomes of a female Roosevelt's muntjac (Muntiacus rooseveltorum) captured in Laos have been studied with G-banding. The diploid number is six and the karyotype is indistinguishable from that of the Indian muntjac (Muntiacus muntjak vaginalis).     

Localization of chromosomal RNA in human G-banded metaphase chromosomes

Chromosomal RNA with an 11% dihydropyrimidine content was extracted from human placental chromatin. Under appropriate conditions, this RNA showed wide-spread in situ hybridization to metaphase chromosomes. This included preferential hybridization to the telomeric regions and heterochromatic short arms of acrocentric chromosomes as well as significant hybridization to Q- and G-positive bands.     

A simple procedure for obtaining autoradiographs of G-banded chromosomes

Chromosomal preparations from cells flash-labeled with ³H-dT were Giemsa-banded following trypsin digestion, allowed to air-dry, and then were coated with a layer of 1% Formvar. The slides were subsequently coated with radiographic emulsion (NTB2) and processed for autoradiography. The resulting chromosomes had distinct G-banding and radiographic labeling patterns. Chemographic grain formation in the emulsion, normally caused by Giemsa stain, was prevented by the film of Formvar, allowing a very low background grain level.     

The centromere index and relative length of human high-resolution G-banded chromosomes

Summary The relative length and centromere index were compared in prometaphase and midmetaphase for each human chromosome from five normal men. There were very few differences between prometaphase and midmetaphase chromosomes in these two parameters. Chromosome 7 had a significantly different centromere index between prometaphase and midmetaphase, but no difference in relative length. This was accounted for by significant differences in the relative length of both 7p and 7q between prometaphase and midmetaphase; 7p became relatively less condensed and 7q relatively more condensed with progression from prometaphase to midmetaphase. For chromosome 1, the short arm was significantly longer than the long arm in both prometaphase and midmetaphase, a finding that underscores the structural similarity of this chromosome among the hominids.     

An improved method for preparing G-banded chromosomes from mouse peripheral blood

We describe here several improvements in the method we originally developed to prepare mitotic chromosomes from peripheral blood of laboratory mice. In addition, we have tried several methods to improve metaphase yield from lymphocytes of the inbred strain DBA/2J, which respond poorly to phytohemagglutinin. The yield of mitoses from DBA/2J cells cannot be improved by enhancing T-cell response using interleukin-2 or by using a different T-cell mitogen, concanavalin A. Metaphase yield from peripheral blood cells of DBA/2J mice can be improved significantly by adding lipopolysaccharide to cultures, probably stimulating B-cell as well as T-cell proliferation.     

Centromeres of mammalian chromosomes

The centromere is the major cis-acting genetic locus involved in chromosome segregation in mitosis and meiosis. The mammalian centromere is characterized by large amounts of tandemly repeated satellite DNA and by a number of specific centromere proteins, at least one of which has been shown to interact directly with centromeric satellite DNA sequences. Although direct functional assays of chromosome segregation are still lacking, the data are most consistent with a structural and possibly functional role for satellite DNA in the mammalian centromere.     

Comparative painting of mammalian chromosomes

Comparative chromosome painting has shown that synteny has been conserved for large segments of the genome in various placental mammals. Advances such as spectral karyotyping and multicolour ‘bar coding’ lend speed and precision to comparative molecular cytogenetics. Reciprocal chromosome painting and hybridisations with probes such as yeast artificial chromosomes, cosmids, and fibre fluorescence in situ hybridisation allow subchromosomal assignments of chromosome regions and can identify breakpoints of rearranged chromosomes. Advances in molecular cytogenetics can now be used to test the hypothesis that chromosome rearrangement breakpoints in human pathology and in evolution are correlated.     

Metaphase association of mammalian chromosomes

The association behavior of chromosomes bearing nucleolar organizer region (NOR) and (or) C-heterochromatin in metaphase plates was analyzed. Different species with an informative chromosomal localization of NOR and C-heterochromatin were evaluated. Several examples indicate that the well-known metaphase association is not due to NORs or NOR activity per se. Other mechanisms such as ectopic pairing are responsible for the association. These types of pairing seem to be enhanced by the chromatin-decondensing effect of nearby NOR activity.     

Localization of single copy DNA sequences on G-banded human chromosomes by in situ hybridization

Recombinant lambda bacteriophage clone H3 containing a human DNA segment of 14.9 kb present in one or two copies per haploid genome was isolated. In situ hybridization to human metaphase chromosomes of the ³H-labeled cloned DNA resulted in highly significant labeling (53% of cells) of band p36 of chromosome 1, such that 22% of all chromosomal grains were located on this region. Hybridization was dependent upon the presence of dextran sulfate in the hybridization mixture and was not affected by repetitive DNA competitor. These results demonstrate localization of a single copy sequence on human metaphase chromosomes.     

Differential reactivity in mammalian chromosomes

Leucocyte cultures were treated with both ³H-thymidine and low temperature. Leucocyte cells were pulse labeled with ³H-thymidine for 15 to 20 minutes, and then placed in nonisotopic medium for 0, 1, 2, 3 and 4 hours respectively. Each culture was immediately treated with low temperature at 0–3° C for 24 hours. No metaphase chromosome were labeled at 0 and 1 hour after reincubation. Labeled metaphases were first observed after 2 hours of reincubation (3.9%); they increased after 3 hours (57%) and 4 hours of reincubation (39%). Labeled anaphases or telophases were also detectable in increasing proportions after 4 hours. Cell division proceeds very slowly through metaphase at low temperature. After labeling in the final 15 to 20 minutes of the S-period, one X-chromosome usually showed the late-replicating pattern. Label was found in the special segments of the X-chromosomes, X_E–a, X_L–a and X_L–b. Late-replicating regions in autosomes coincide more or less with the special segments. Differential reactivity in human chromosomes by low temperature was suggested to take place during the final part of G₂ after DNA synthesis.     

Replication of DNA in mammalian chromosomes

DNA replication has been studied in cells (CHO) synchronized by mitotic selection from roller cultures. A study of the incorporation of ³H supplied as uridine indicates that cells cannot be blocked precisely at the beginning of the S phase, but DNA synthesis can be stopped in early S by treating with F-dU in G₁. After blockage potential initiation sites continue to increase at a linear rate for atleast 13 hours after division. Incorporation of ³H-thymidine begins at most of these sites within seconds after thymidine is supplied in the medium and incorporation continues at a linear rate for 20–24 minutes. There appears to be a pause after this interval before synthesis is resumed at about two times the initial rate. ³H-bromodeoxyuridine can be substituted for thymidine without affecting the kinetic pattern over a similar period. The increased rate is probably an increase in sites of chain growth rather than a change in rate of chain growth. A study of the labeled DNA segments by band sedimentation in a preformed NaClO₄ isokinetic gradient shows that two distinctly different sized segments can be released from the chromosomes by lysis at submelting conditions. One is the previously reported single chain segments averaging about one-half micron in length, but the other is a much larger segment (26S) which is native DNA with perhaps small regions of single chains presumably at the ends. Primarily single chain DNA is released after 1–2 minute pulse labeling, but after 2 minutes the larger segments (26S) contain most of the newly formed DNA except that attached to the chains of the major part of the template DNA which exhibits a discontinuous distribution, sedimenting far faster than either newly replicated segment. A consideration of the kinetics of formation of the 26S component indicates that is may contain the replicating fork. If this proves to be the correct interpretation the template chains would both have non-adjacent nicks preceeding the fork and also in a post-fork site at a mean distance of about 2 microns in both directions. The isolation of the growing points of DNA replication in chromosomes is now possible and the study of properties of the newly replicated regions should be greatly facilitated.     

Replication of DNA in mammalian chromosomes

A study of sedimentation and buoyant density of Okazaki fragments from mammalian chromosomes along with electron microscopic studies indicate that fragments from about 200 to 1200 nucleotides long may have RNA segments covalently attached. The fragments in some CsCl isopycnic gradients banded in two rather distinct bands. One band corresponds to the density of single-stranded DNA, but the other has a higher buoyant density which could be conferred by a segment of RNA up to 180 nucleotides or more in length. The RNA was not removed by denaturing conditions which separated DNA strands consisting of several thousand nucleotide pairs. When the material of higher buoyant density was spread for electron microscopy under conditions which would extend single-stranded DNA chains, but leave RNA in a coil or bush the chains with a higher buoyant density usually had a bush attached at one end. Under conditions that were thought to favor gap filling over chain elongation near growing forks, the DNA produced by pulse labeling with bromodeoxyuridine had a buoyant density which would indicate substitution to about 15 percent in one chain. If this substitution represents filling of gaps occupied by RNA before the pulse, the segments would be about 180 nucleotides in length assuming about 1,000 nucleotides between each segment.     

Highly conserved segments in mammalian chromosomes

Mammalian chromosomes from seven species for which gene maps exist were studied by high-resolution techniques to identify areas of conserved chromosome banding homology. High-resolution comparisons of human, chimpanzee, gorilla, orangutan, African green monkey, cat, and mouse chromosomes revealed regions of apparently conserved chromosomal banding, which may indicate the likely positions of conserved linkage in the phylogeny of mammals. This analysis indicates that many regions of subbanding homology may have remained intact during the evolution of mammals and reflects a high degree of chromosome conservation in diverse species.     

Differential spiralization along mammalian mitotic chromosomes

Morphology of chromosomes replicating in the presence of 5-bromodeoxyuridine was studied using long-term cultures of Chinese hamster cells (line Blld-ii-FAF28). The cytological effect of the analog administered in various concentrations, at different stages of the S period, and during one and two successive mitotic cycles was studied. — The main cytological manifestation of the BUdR action consisted in spiralization delay of certain chromosome regions. The degree of the delay was dependent on the time interval between the introduction of the agent and mitosis, as well as on the agent's concentration. With prolongation of the interval, the spiralization delay diminished and disappeared being therefore always observable only in late replicating chromosome regions. Increased concentration of BUdR (in the range of 25 to 400 g/ml) produced enhancement of the delay of chromosome spiralization. — After two successive reproduction cycles in the presence of BUdR, a great number of metaphases contained chromosomes the sister chromatids of which showed unequal spiralization delay. Autoradiography of ³H-BUdR distribution showed that the sister chromatid with a more pronounced underspiralization corresponds to the chromatid incorporating BUdR into both strands of the DNA molecule. — Mechanisms of the effect observed, as well as chemical influence on chromosome spiralization as a usefull tool of displaying linear chromosome differentiation, are discussed.