Lines of phylogenetic studies of brachiopods

The main techniques used in phylogenetic studies of brachiopods are reviewed, onto-phylogenetic and morphobiological. The advantages and shortcomings of each method are discussed.     

The brachiopod fold: a neglected body plan hypothesis

Attention is drawn to Nielsen's radical body plan concept, here named the 'brachiopod fold hypothesis', under which brachiopods and phoronids are recognized to be transversely folded across the ontogenetic anterior–posterior axis so that, to make useful comparisons with other phyla, these organisms must be conceptually unfolded. Under the hypothesis brachiopod brachial and pedicle shell valves are respectively 'anterior' and 'posterior' rather than 'dorsal' and 'ventral' as traditionally described. The hypothesis makes sense of the symmetry axes of the brachiopod shell, is consistent with various indications from fossil and Recent brachiopods, and gives rise to predicted patterns of axis–determining gene expression that differ from those obtaining under the traditional view of the body plan, whilst the variety of folding movements in different lineages implies that superficially dissimilar morphogenetic folds may be fundamentally homologous. Convergent folding patterns are noted in some other organisms. A previous conjecture that inarticulate linguloid brachiopods were derived from halkieriid–like ancestors is elaborated with proposals that recognize possible functional continuities of coelomic and marginal sclerite functions, and it is noted that an ancestrally facultative fold could have become incorporated by genetic assimilation into the brachiopod developmental program. An experimental approach is outlined to test the possibility that some members of the 'small shelly fauna' may have been members of the halkieriid–like brachiopod stem lineage and it is also suggested that buoyancy modification may have been an important function of mineralization amongst Lower Cambrian floaters and swimmers, since negative buoyancy would facilitate access to the benthic niche.     

Independent similarity in the morphological evolution of brachiopods

The close similarity of the shell exterior of articulate brachiopods from different orders, which must be taken into account in taxonomic identifications and phylogenetic reconstructions, is analyzed. A possible mechanism of the appearance of such brachiopods in connection with the morphogenetic generality of the structurally similar organisms is evaluated.     

Intraspecific variability in rhynchonellid brachiopods: test of a competition hypothesis

The variability in the plicae of the central fold of eight rhynchonellid brachiopods – Lepidocyclus capax (Ordovician), Stegerhynchus whitii (Silurian), Megalopterorhynchus baldwini (Devonian), 'Camarotoechia' purduei (Mississippian), Wellerella osagensis (Pennsylvanian), Leiorhynchus weeksi (Permian), 'Pugnoides'; Iriassicus (Triassic) and Tetrarhynchia sp. (Jurassic) – is inversely related to the diversity of brachiopods within the faunal assemblage. Explanations for the phenotypic variability due to taxonomic splitting, sexual polymorphism or ontogenetic development are precluded or unsupported by the morphologic analysis, although a small percentage of the morphologic variability can be ascribed to ecophenotypic differentiation by environmental stimuli.
After considerations of the abiotic influences of time, geographic location and isolation, and environmental stability and homogeneity, most of the morphologic variability in these brachiopods is attributed to the biotic influence, namely competition. Other proposed relationships, i.e. population abundance, sample size, shell size or ribbing pattern and intraspecific variability are not statistically significant.     

Location and interpretation of ontogenetic relics in the shell of adult brachiopods

Baker, Peter G. 1989 07 15: Location and interpretation of ontogenetic relics in the shell of adult brachiopods. Lethaia , Vol. 22. pp. 241–245. Oslo. ISSN 0024–1164.
Careful sectioning of critically orientated adult Ornithella bathonica (Rollier) shells has revealed, close to the umbo in the secondary fibrous shell layer of the brachial valve, relics of early ontogenetic structures which can be directly correlated with those of early juveniles of Zeilleria leckenbyi (Davidson ex Walker MS). It is now confirmed that very early in ontogeny, the brachial valve of O. bathonica possessed a septal pillar identical with that found in Z. leckenbyi and many terebratellacean species. * Brachiopoda. Terebratellidina, Ornithellidae, ontogenetic relics, buried microstructure .     

Geochemical investigation of growth in selected Recent articulate brachiopods

Buening, N. & Carlson. S. J. 1992 07 15: Geochemical investigation of growth in selected Recent articulate brachiopods.
Growth increments have traditionally been used to determine age and growth rates of shelled organisms, particularly bivalves. Brachiopod growth increments and the time span they represent are rather poorly understood, however. Geochemical analyses of trace element concentrations preserved in skeletal calcite may provide an alternative method to determine the age of Recent brachiopods and to interpret their patterns of growth. Magnesium is a particularly important trace element in skeletal calcite because it is thought to vary with temperature, growth rate. and taxonomic affiliation. Electron microprobe analyses of Mg concentrations in the Recent articulate, temperate water brachiopods Terebratulina unguicula and Terebrotalia transversa , have revealed two distinct ontogenetic patterns of Mg concentration. The primary ontogenetic pattern is characterized by elevated and more variable levels of Mg concentration during early growth. followed by lower, more stable Mg concentrations during growth after sexual maturity. This pattern appears to be related to a predictable decrease in growth rate through ontopeny. Secondary peaks of Mg superimposed on this primary pattern may represent growth spurts related to annual cycles of productivity. Preliminary Fourier analyses of patterns of Mg concentration provide additional support for this hypothesis. Thus, a record of productivity characterized by annual peaks of Mg concentration may well allow us to age individual brachiopods by means other than size-frequency histograms. growth lines, and other less precise and accurate methods. Brachiopods, growth. biomineralization, calcification, Terebratali transversa, Terebratulina Unogicui.a, magnesium, Calcium, geochemical. ontogeny .     

Allometric studies of fossil brachiopods

In different groups of fossil brachiopods new adaptations were formed by changes in size, shape, and proportions of morphological structures in ontogenetic and phylogenetic development.     

Genetic Analysis of Size-Scaling Patterns in the Mouse Mandible

The relationship between multidimensional form of the adult mouse mandible and body size is examined from an ontogenetic perspective. The origin and ontogeny of phenotypic correlations are described in terms of genetic and environmental covariance patterns between adult skeletal morphology and growth in body weight. Different ontogenetic patterns are observed in the genetic correlations, and these can be related to the developmental as well as the functional aspects of mandibular form. The quantitative genetic aspects of craniomandibular growth and morphogenesis are explored, together with an examination of the impact of ontogenetic changes in the genetic variance-covariance structure on morphogenetic integration and evolution by selection.     

The origin and geometry of radial ribbing patterns in articulate brachiopods

Ackerly, S. C. 1992 07 15: The origin and geometry of radial ribbing patterns in articulate brachiopods.
Geometric models for simple. radial ribbing in articulate brachiopods include (1) ribs radiating isometrically from the shell umbo. (2) divergence of thc ribs from some 'point' within the shell, and (3) reorientation of the ribs at right angles to the shell margin. Analyses of the Orthida, the ancestral taxon of articulate brachiopods, indicate that rib geometries are isometric in Early Cambrian taxa (model 1). but that by the Early Ordovician rib orientations are generally perpendicular to the shell margin (model 3). A combination of functional and morphogenetic Factors explains the ribbing geometries observed in orthide brachiopods.     

Determination of paleoseasonality of fossil brachiopods using shell spiral deviations and chemical proxies

Brachiopods have been extensively used in paleoclimatic and paleoecological reconstructions, but their utility would greatly increase if paleoseasonality information could be obtained from their shells. Determining seasonal seawater temperature variations from fossil brachiopods requires knowledge of specimen ontogenetic ages, which is difficult to determine compared to other organisms secreting a shell by accretion. In this study, the combination of the spiral deviation methodology and chemical proxies is tested for determining specimen ontogenetic ages and paleoseasonality using two species of fossil brachiopods, Laqueus rubellus and Terebratula terebratula, of Pleistocene and Late Miocene age, respectively. Spiral deviations were obtained for Laqueus and Terebratula using an R program developed for modern taxa, and well-preserved shells were analyzed using oxygen isotopes and Mg/Ca ratios as chemical proxies for past seawater temperature. Results reveal that locations of spiral deviations on shells of L. rubellus displayed a strong direct relationship with Mg concentrations, and resulting Mg/Ca-derived paleotemperatures were seasonal. Conversely, specimens of T. terebratula did not show a consistently strong relationship between Mg concentrations and spiral deviations, although resulting paleotemperatures agreed with those from previous studies. Overall, the results from this study indicate that the spiral deviation methodology combined with chemical proxies presents great potential for utility in past seasonal seawater temperature reconstructions in pristinely preserved, biconvex fossil brachiopods.     

The Bio-Logic and machinery of plant morphogenesis

Morphogenesis (the development of organic form) requires signal-trafficking and cross-talking across all levels of organization to coordinate the operation of metabolic and genomic networked systems. Many biologists are currently converging on the pictorial conventions of computer scientists to render biological signaling as logic circuits supervising the operation of one or more signal-activated metabolic or gene networks. This approach can redact and simplify complex morphogenetic phenomena and allows for their aggregation into diagrams of larger, more "global" networked systems. This conceptualization is discussed in terms of how logic circuits and signal-activated subsystems work, and it is illustrated for examples of increasingly more complex morphogenetic phenomena, e.g., auxin-mediated cell expansion, entry into the mitotic cell cycle phases, and polar/lateral intercellular auxin transport. For each of these phenomena, a posited circuit/subsystem diagram draws rapid attention to missing components, either in the logic circuit or in the subsystem it supervises. These components must be identified experimentally if each of these basic phenomena is to be fully understood. Importantly, the power of the circuit/subsystem approach to modeling developmental phenomena resides not in its pictorial appeal but in the mathematical tools that are sufficiently strong to reveal and quantify the synergistics of networked systems and thus foster a better understanding of morphogenesis.     

New Carboniferous brachiopods from the eastern Great Basin, Nevada, USA: implications for loop ontogeny and evolution in Late Palaeozoic terebratuloids

Terebratuloid brachiopods from two localities in the eastern Great Basin, Nevada, USA, include the new taxa Cryptacanthia savagei sp. nov., Fletcherithyris infrequens sp. nov., Cryptonella simplex sp. nov., and Albelenina alvarezi gen. et sp. nov. The faunas are considered to be mid Desmoinesian (late Moscovian) in age. The brachiopods were found associated in clusters, and many of the specimens are well preserved. Records of Pennsylvanian terebratuloid brachiopods are uncommon, and these faunas have enabled an understanding of internal features previously unknown or poorly understood. Systematic analyses of the faunas have generated some new concepts on the ontogeny and evolution of the loop in Late Palaeozoic terebratuloids. From ontogenetic analyses, it is inferred that the stage of loop development may be the most important aspect in taxonomic classification. Analyses of loop evolution suggest the possibility of a transition from a teloform stage to long-flanged deltiform and deltiform stages. These transitions may be possible through reduction in length of the descending lamellae of the crura by resorption of calcium carbonate or posteroventral folding of flanges. Subsequently, these changes in loop morphology are retained by paedomorphosis within long-term evolutionary processes.     

Ontogenetic and interspecific organ weight allometry in Old World monkeys

The importance of allometry as an analytic tool is well recognized in the literature of primate morphology. However, a number of recent studies have illustrated how interpretive difficulties can arise when researchers confound different types of allometric data. Such confusion is due less to carelessness than to uncertainty about how different types of allometry are related. The present study examines the relationship between two types—ontogenetic and interspecific allometry–in the case of organ weight scaling in six species of Old World monkeys. Accepting the interpretation of interspecific allometry as a reflection of functional scaling constraints, the results of this analysis indicate how ontogenetic patterns have been modified in different-sized species to maintain compliance with these constraints. Specifically, for the heart and lungs it appears that vertical transpositions of individual species' ontogenies are dictated by isometric interspecific allometry, while in the case of the kidneys and liver, the relation of negative allometry across species entails alteration of the relative growth coefficients of the individual species. While these conclusions can at present only be applied to organ weight scaling, the approach of examining interspecific patterns in light of developmental differences between species should prove very helpful in our efforts to understand the phenomena of size and scaling.     

Molecular data indicate the protostome affinity of brachiopods

Although the phylogenetic position of brachiopods has always been subject to debate, many authors place them as a sister group to deuterostomes on the basis of morphological and developmental characters. However, molecular phylogeny consistently places them among protostomes. More precisely, brachiopods are predicted to branch inside the lophotrochozoan assemblage, together with annelids, molluscs, nemerteans, flatworms, and others. That result has been criticized on the basis of (1) prior knowledge of brachiopod morphology and (2) the known limitations of molecular phylogenies. Here I review recent data of molecular origin, particularly those displaying qualitative properties close to those of morphological characters. The complement of Hox genes present in all metazoa tested to date has proved to be a powerful tool for broad phylogenetic reconstruction. The mitochondrial genome also provides qualitative characters, showing discrete events of gene rearrangements. After discussing the data and the way they should be interpreted in the perspective of several hypotheses for metazoan phylogeny, I conclude that they argue strongly in favor of the protostome (and lophotrochozoan) affinity of the brachiopods. There is therefore a need for a reinterpretation of brachiopod morphological and developmental characters. I also identify some research axes on brachiopod morphology.     

Immunological responses from brachiopod skeletal macromolecules; a new technique for assessing taxonomic relationships using shells

The phylogenetic relationships of living, calcareous-shelled brachiopods have been assessed on the basis of immunological responses from intracrystalline macromolecules. Calculations of immunological distances between representatives of the order Terebratulida have revealed a primary threefold division which correlates precisely with a proposed subdivision of the order into three superfamilies but refutes attempts to establish a fourth superfamily. This conclusion was confirmed by carrying out immunological investigations of small shell fragments from other brachiopod genera which were so rare that no antisera could be prepared. The immunological results also indicate a fundamental subdivision of the long-looped brachiopods, with one group perhaps being derived from short-looped terebratuloids rather than long-looped terebratelloids. Sero-taxonomy of skeletal macromolecules provides an ideal method of acquiring molecular phylogenetic data in many groups because a large number of taxa can be surveyed in a short period of time, and microscopic pieces of shell contain sufficient antigenic determinants for many reactions. The technique can also be applied to specimens which have been stored without special treatment in museum collections, making the technique particularly applicable to rare taxa for which no other form of molecular data is available. □ Immunology, Brachiopoda, taxonomy, intracrystalline molecules.     

Morphology of gametes of mollusks, echinoderms, and brachiopods in systematics and phylogeny

The morphology of eggs and sperm of echinoderms, mollusks, and brachiopods was studied and compared. The gametes of inarticulate brachiopods (two classes Lingulata and Craniata and two subphyla Linguliformea and Craniaformea) are shown to have significant morphological differences from those of articulate brachiopods (extant class Rhynchonellata, subphylum Rhynchonelliformea). Inarticulate brachiopods have similar sperm morphology to that of primitive brachiopods, bivalves and some polychaetes that have external fertilization. Sperm morphology of articulate brachiopods is similar to that of echinoderms, which are considered to be typical deuterostomate invertebrates. This similarity supports an early deviation of lophophore-bearing animals from Bilateria, before this lineage branched into Protostomia and Deuterostomia. Similar gamete morphology in Lingulata and Craniata supports the view that inarticulate brachiopods should be retained as a supraclass taxon for comparison with other Lophotrochozoa, in particular with phoronids, bryozoans, and mollusks. Based on the new data on the gamete morphology in inarticulate brachiopods, we propose the name Lingulophyles with the type genus Lingula, and for articulate brachiopods Coptothyrophyles with the type genus Coptothyris.     

Ontogeny–a way forward for systematics, a way backward for phylogeny

In the history of biology, the term 'evolution' has carried a dual meaning, viz. ontogeny (the unfolding of the germ) versus phylogeny (descent with modification). A problem in modern biology is the question of whether it is ontogeny which creates phylogeny, or whether it is phylogeny which moulds ontogeny. The paper explores the relationship of ontogeny to phylogeny in the context of 'pattern cladism'. The conclusion is that the analysis of ontogeny provides a direct method for classification ('a way forward for systematics'), which is a logical prerequisite for a phylogenetic interpretation of ontogenetic sequences ('a way backward for phylogeny'). The ontogenetic process of growth, subdivision and differentiation is related to the 'morphogenetic tree theory' on the basis of Von Baer's "laws of individual development". This conceptual relation shows that ontogeny creates phylogeny in an upward direction within the morphogenetic tree, whereas phylogeny (by means of natural selection) moulds ontogeny in a downward direction. A conflict originates with the conventions of Linnaean classification if ontogenetic divergence is proposed as a causal agent in the origin of higher taxa. It is proposed to solve this conflict by viewing individual organisms (or reproductive communities) not as constituents, but as representatives of higher taxa.     

Morphogenetic regulation in the shells of bivalves and brachiopods: evidence from the geometry of the spiral

Ackerly. S. C. 1992 07 15: Morphogenetic regulation in the shells of bivalves and brachiopods: evidence from the geometry of the spiral.
Analyses of the spiral geometry in shells of the mollusc Pecten maximus and the brachiopod Terebratulina retusa indicate a relative reduction in morphological variability within the population during growth. The spiral, as measured by a model of exponential radial expansion, tends to converge on a particular adult form, irrespective of irregularities during early growth phases. The recurrence of this pattern of variability in populations from two separate phyla (molluscs and brachiopods) suggests a common mechanism controlling shell form. Brachiopoda. Mollusca, coiling, spiral. morphogenetic regulation, growth .     

Homology and a generative theory of biological form

Homology continues to be a concept of central importance in the study of phylogenetic relations, but its relation to ontogenetic processes remains problematical. A definition of homology in terms of equivalent morphogenetic processes is defined and applied to the comparative study of tetrapod limbs. This allows for a consistent treatment of relations of similarity and difference of appendage structure in vertebrates, and the distinction between fishes fins and tetrapod limbs in terms of the concept of equivalence is described. The role of genes can also be clarified in this context, in particular the influence of the Hox 4 complex in determining digit character and the homeotic transformations that arise from changes in their expression patterns. It is argued that these observations are not compatible with the notion of homology between individual digits (I, II, III, etc.) across the tetrapods, and that homology cannot be consistently identified with gene action. The relations between homology and the properties of the morphogenetic limb field are discussed.