Origins of the southeastern Australian vegetation

Australia is an ancient continent with an interesting geological history that includes a recent major shift in its position, both globally and compared with neighbouring land masses. This has led to a great deal of confusion over many years about the origins of the Australian biomes. The plant fossil record is now clarifying this, and it is clear that the ancient Gondwanan rainforests that covered Australia while it was still part of that supercontinent contained many of the elements of the modern vegetation. However, major climatic sifting, along with responses to other factors, including soil nutrient levels, disturbance regimes, atmospheric CO2 levels, fire frequency and intensity, glaciations and the arrival of humans, have had profound impacts on the Australian vegetation, which today reflects the sum of all these factors and more. The origins of Australian vegetation and its present-day management cannot be properly understood without an appreciation of this vast history, and the fossil record has a vital role to play in maintaining the health of this continent's vegetation into the future.     

Molecular identification of co-occurring Cortinarius and Dermocybe species from southeastern Australian sclerophyll forests

 The ability of restriction fragment length polymorphism (RFLP) analysis of the rDNA internal transcribed spacer (ITS) region to discriminate 10 co-occurring Cortinarius and Dermocybe species at a southeastern Australian sclerophyll forest site was assessed. Using the basidiomycete-specific primers ITS1F and ITS4B, some taxa were separated on the basis of individual RFLP patterns derived using the restriction endonucleases Hae III or Hinf I. Combined data from both endonucleases were, however, required to separate all taxa [Dermocybe austro-veneta Clel. (Moser & Horak), C. rotundisporus Clel. & Cheel, C. archeri Berk., C. sinapicolor Clel., C. violaceus (L.: Fr.) S.F.Gray, C. radicatus Clel. and four morphologically-distinct, but unidentified Cortinarius spp.]. ITS sequence comparisons confirmed that D. austro-veneta belongs in Dermocybe, that C. rotundisporus is correctly placed in subgenus Phlegmacium, and suggest that Australian C. violaceus collections are not conspecific with northern hemisphere C. violaceus. Accepted: 4 March 1999     

Population dynamics of two suspension-feeding bivalves on a sheltered beach in southeastern Brazil

The population biology and secondary production of the bivalves Anomalocardia brasiliana (Gmelin, 1791) and Diplodonta punctata (Say, 1822) were studied on a sheltered beach on the southeast coast of Brazil (Flexeiras Beach) between December 2006 and February 2009. Six transects were established perpendicular to the shoreline. Along each transect, sampling units (SUs) were extracted every 3?m, with a 0.04?m² metal sampler and to a depth of 25?cm, from the base of the boulder wall until 9?m below the waterline during low tide. The abundances of A. brasiliana and D. punctata were inversely correlated over time. The populations differed in several aspects: (1) A. brasiliana occupied mainly the upper levels, whereas D. punctata occupied the lower level of the beach; (2) total abundance, growth rate, and production were higher for A. brasiliana; and (3) mortality and turnover rate were higher for D. punctata. The differences in growth, mortality, and production parameters may be associated with a difference in the species’ abilities to exploit resources.     

Nitrogen release from surface sand of a high energy beach along the southeastern coast of North Carolina,USA

This study examined changes in dissolved organic nitrogen (DON) and dissolved inorganic nitrogen (DIN) in coastal seawater after exposure to sand along a high energy beach face over an annual cycle between April 2004 and July 2005. Dissolved organic nitrogen, NO₃ ⁻, and NH₄ ⁺ were released from sand to seawater in laboratory incubation experiments clearly demonstrating that they are a potential source of N to underlying groundwater or coastal seawater. DON increases in seawater, after exposure to surface sands in laboratory experiments, were positively correlated with in situ water column DON concentrations measured at the same time as sand collection. Increase in NO₃ ⁻ and NH₄ ⁺ were not correlated with their in situ concentrations. This suggests that DON released from beach sands is relatively more recalcitrant while NO₃ ⁻ and NH₄ ⁺ are utilized rapidly in the coastal ocean. The release of N was seasonal with carbon to nitrogen ratios indicating that recent primary productivity was responsible for the largest fluxes in summer while more degraded humic material contributed to lower fluxes in winter. Fluxes of total dissolved nitrogen (DON and DIN) from surface sand (2.1 × 10⁻⁴ mol m⁻² h⁻¹) were similar to that of groundwater and more than an order of magnitude larger than rain deposition indicating the potential importance of surface sand derived nitrogen to the coastal zone with a corresponding impact on primary productivity.     

Population genetics and conservation of the threatened southeastern beach mouse (Peromyscus polionotus niveiventris): subspecies and evolutionary units

We investigated genetic diversity within the southeastern beach mouse (SEBM-Peromyscus polionotus niveiventris) and also tested the hypothesis that the subspecies recognition of P.p. niveiventris, based on size and color differences, is congruent with this taxon representing a discrete evolutionary lineage. We used ten polymorphic microsatellite loci and mitochondrial cytochrome-b gene DNA sequences to investigate genetic diversity and population structure within the SEBM, and to determine the level of divergence between the SEBM and the nearest known inland subspecies of the oldfield mouse (Peromyscus polionotus rhoadsi). Moderate genetic distances were observed between the SEBM and the inland oldfield mouse based on microsatellite data, with F _ST values ranging from 0.11 to 0.22 between these taxa. Additionally, mitochondrial DNA haplotypes of the SEBM formed a distinct monophyletic group relative to haplotypes sampled from P. p. rhoadsi. Based on previous estimates of rates of mitochondrial DNA evolution in rodents, we inferred that Pleistocene sea-level fluctuations are likely responsible for the historical isolation of the SEBM lineage from mainland P. polionotus. Our data demonstrate the genetic distinctiveness of the SEBM, justifying the current subspecies designation for the SEBM and its continued protection under the United States Endangered Species Act. We classify the Cape Canaveral and Smyrna Dunes Park populations of SEBM as a single evolutionary significant unit. The two known extant allopatric populations of the SEBM showed some differentiation in microsatellite frequencies and were moderately reciprocally distinguishable based on assignment to distinct genetic clusters by a Bayesian admixture procedure. These results justify the classification of these two extant SEBM populations as distinct management units that should be independent targets of management and conservation attention.     

Ichnology of Lower Jurassic beach deposits in the Shemshak Formation at Shahmirzad,southeastern Alborz Mountains,Iran

A 19 m thick package of well-sorted lowermost Jurassic (Hettangian-Lower Sinemurian?) sandstones within the Shemshak Formation of the southeastern Alborz Mountains displays features characteristic of foreshore to upper shoreface environments such as tabular bedding, low-angle lamination, trough cross-stratification, parting lineation, and oscillation ripples. In contrast to most other beach successions recorded in the literature the sandstones contain a trace fossil assemblage characterised by low abundance but comparatively high diversity. The assemblage, comprising 14 ichnotaxa, is dominated by Palaeophycus heberti, Rhizocorallium irregulare, Gyrochorte comosa, and Parahaentzschelinia surlyki. Contrary to predictions, which assume a dominance of suspension-feeders in such high-energy environments, the trace fossil assemblage represents a variety of ethological groups ranging from suspension-feeders to deposit-feeders, detritus-feeders, scavengers, and a possible trap constructor (Ctenopholeus), whereby deposit-feeders predominate. This anomaly is explained by a high amount of organic detritus in the sediment, indicated by abundant plant material, and a position of the beach in the vicinity of a river mouth.     

Catch and discards from experimental trawl and longline fishing in the deep water of the Rockall Trough

Comparative bottom trawl and longline surveys were carried out on two chartered commercial fishing vessels in the deep waters (350-1300 m) of the Rockall Trough, an area subjected to heavy commercial exploitation. The species composition, catch rates and length distributions from each survey were very different and reflected the fundamental difference in the two types of fishing operations. Bottom-trawled catches produced greater species diversity and higher discard rates. Longline catches produced larger specimens of teleost fish and were dominated by squalid shark. Trawl discards, expressed as kgs of discards per tonne of roundnose grenadier Coryphaenoides rupestris landed, were calculated for a broad range of the most abundant species taken in the catch. First estimates of total international discarding from deep-water trawling operations in the Rockall Trough area (7530 tonnes; 26.5 million individuals) were made by raising the discard rates using international grenadier landings for 1995. The outlook for the continued exploitation of the deep-water fish resource in the Rockall Trough and possible management options are discussed.     

Ordovician chitinozoans and acritarchs from southern and southeastern Turkey

Revision of the lithostratigraphy of Ordovician deposits in southern and southeastern Turkey led to a re-evaluation of the age assignments of formations identified in the subsurface and at outcrop. Previous datings were based on macrofauna (mainly trilobites and graptolites). The present paper focuses exclusively on organic-walled microfossils (chitinozoans and acritarchs), which provide numerous chronostratigraphical improvements, especially in successions barren or poor in macrofossils. Close to 200 samples were collected in the Taurus chain (i.e. from Kemer, Seydisehir, Ovacik, Kozan, to Sariz regions in southern Turkey) and in the Border Folds (Mardin and Hakkari regions), usually regarded as part of the Arabian Plate in palaeogeographical reconstructions. Many samples are productive and yield chitinozoans and/or acritarchs of extremely variable preservation, depending on their geographical and geological location. In the Taurus chain, the material is “coalified” and frequently fragmented whereas, in the Border Folds, maturation of the organic matter is much lower and preservation of the microfossils is good to excellent. Several Ordovician chitinozoan biozones (northern Gondwana zonation) as well as diagnostic acritarch assemblages are identified in southern and southeastern Turkey. These Ordovician formations are assigned here to the new global stages of the Ordovician chronostratigraphical scale. The Seydisehir (upper part), Sobova, and Kilgen Lake (lower part) formations are referred to the Darriwilian. The Kilgen Lake (upper part), Sort Tepe, and Bedinan formations are attributed to the Sandbian and to the Katian, and the Halevikdere Formation (glacio-marine part) is assigned to the Hirnantian. Reworking of Early Ordovician acritarchs is documented in pre-glacial and in glacial Late Ordovician deposits. They indicate that active erosive processes occurred during the Middle and Late Ordovician sedimentation. The organic-walled microfossils recorded in the Ordovician of south and southeastern Turkey belong to the northern Gondwana realm. Interestingly however, some Baltoscandian influences are noted in the Border Folds during Early Late Ordovician.     

Mortality of key fish species released by recreational anglers in an Australian estuary

A field experiment was done to quantify the mortality of fish released during a recreational angling tournament in Botany Bay, Australia. Participating boat-based anglers were divided into two groups, each representing different typical catch-and-release events. The first group (termed the ‘live weigh-in group’) retained the largest two individuals of 4 species (dusky flathead, Platycephalus fuscus, yellowfin bream, Acanthopagrus australis, sand whiting, Sillago ciliata, and trevally, Pseudocaranx dentex) in onboard holding tanks and then presented these to researchers at designated weigh-in times and stations. Gear, operational and handling data were collected before 125 fish were tagged using plastic t-bar tags, returned to the anglers and then released into two sea cages. The second group (termed the ‘immediate-release group’) immediately released 224 fish into two sea cages, after they were tagged and relevant data recorded by onboard observers. This group represented those fish routinely discarded (i) as part of catch-and-immediate-release tournaments and/or (ii) due to minimum legal sizes and/or personal quotas. Appropriate species and numbers of ‘control’ fish were seined and placed into two sea cages. All fish were monitored for mortalities over 10 days. Dusky flathead, yellowfin bream, trevally and snapper, Pagrus auratus accounted for more than 85% of the total catch. Their adjusted mortalities ranged between 0% and 36.6%. Irrespective of the treatment, most yellowfin bream and snapper deaths occurred within 3 h of being hooked and released into the cages, while trevally and dusky flathead showed a delayed mortality over 4 days. Owing to confounding effects due to their confinement, dusky flathead were excluded from further analyses. Anatomical hook location and the time between capture and release were significant predictors of mortality for yellowfin bream and trevally, respectively (p < 0.01), but none of the various gear, operational or handling factors examined were significant for snapper (p > 0.05). The results are discussed in terms of species-specific variabilities in mortalities, their causal effects and better management of catch-and-release events.     

Traditional and Emerging Lifestyle Risk Behaviors and All-Cause Mortality in Middle-Aged and Older Adults: Evidence from a Large Population-Based Australian Cohort

Background

Lifestyle risk behaviors are responsible for a large proportion of disease burden worldwide. Behavioral risk factors, such as smoking, poor diet, and physical inactivity, tend to cluster within populations and may have synergistic effects on health. As evidence continues to accumulate on emerging lifestyle risk factors, such as prolonged sitting and unhealthy sleep patterns, incorporating these new risk factors will provide clinically relevant information on combinations of lifestyle risk factors.

Methods and Findings

Using data from a large Australian cohort of middle-aged and older adults, this is the first study to our knowledge to examine a lifestyle risk index incorporating sedentary behavior and sleep in relation to all-cause mortality. Baseline data (February 2006– April 2009) were linked to mortality registration data until June 15, 2014. Smoking, high alcohol intake, poor diet, physical inactivity, prolonged sitting, and unhealthy (short/long) sleep duration were measured by questionnaires and summed into an index score. Cox proportional hazards analysis was used with the index score and each unique risk combination as exposure variables, adjusted for socio-demographic characteristics.During 6 y of follow-up of 231,048 participants for 1,409,591 person-years, 15,635 deaths were registered. Of all participants, 31.2%, 36.9%, 21.4%, and 10.6% reported 0, 1, 2, and 3+ risk factors, respectively. There was a strong relationship between the lifestyle risk index score and all-cause mortality. The index score had good predictive validity (c index = 0.763), and the partial population attributable risk was 31.3%. Out of all 96 possible risk combinations, the 30 most commonly occurring combinations accounted for more than 90% of the participants. Among those, combinations involving physical inactivity, prolonged sitting, and/or long sleep duration and combinations involving smoking and high alcohol intake had the strongest associations with all-cause mortality. Limitations of the study include self-reported and under-specified measures, dichotomized risk scores, lack of long-term patterns of lifestyle behaviors, and lack of cause-specific mortality data.

Conclusions

Adherence to healthy lifestyle behaviors could reduce the risk for death from all causes. Specific combinations of lifestyle risk behaviors may be more harmful than others, suggesting synergistic relationships among risk factors.     

The relationship between invertebrate assemblages and available food at forest and pasture sites in three southeastern Australian streams

1. Levels of ash-free dry matter (AFDM) and chlorophyll a in epilithon, benthic participate organic matter (BPOM), invertebrate assemblage composition, and biomass of functional feeding groups were compared in winter and summer at forest and pasture sites in three Victorian streams. 2. Chlorophyll a concentrations of epilithon were significantly higher at pasture than forest sites in winter but not in summer while BPOM was not significantly greater at forest sites in either season. Epilithic biomass as AFDM did not show consistent differences between land uses or seasons. 3. Total biomass of invertebrates did not differ between forest and pasture sites but the biomass of shredders was significantly higher, and that of grazers significantly lower, at forest than pasture sites. A site shaded with an artificial canopy behaved as a forest site for grazers but as a pasture site for shredders. 4. Cluster analyses of invertebrate assemblages grouped pasture sites with forest sites on the same stream at the same season, indicating that assemblage composition was less influenced by land-use differences than by between-stream and seasonal differences. 5. Biomass of functional feeding groups appeared to be a more sensitive indicator of invertebrate assemblage response to land-use alteration than either species diversity/ richness measures, or multivariate assemblage composition measures.     

Sanitary quality of marine sediments and sands from an Italian beach

Microbiological surveys were carried out on marine sands and sediments collected at a sandy beach along a coastal area close to Rome, Italy. Low densities of faecal indicator bacteria were recovered, and among them enterococci outnumbered the coliforms. The group of staphylococci was in a fairly constant concentration throughout the period of sampling. Some statistically significant correlations were calculated between yeasts and moulds, Escherichia coli and enterococci and between the latter and Clostridium spores. The data obtained could be a reference point for further studies.     

Co-Morbidity,Ageing and Predicted Mortality in Antiretroviral Treated Australian Men: A Quantitative Analysis

Background

Life expectancy has increased in HIV-positive individuals receiving combination antiretroviral therapy (cART); however, they still experience increased mortality due to ageing-associated comorbidities compared with HIV-negative individuals.

Methods

A retrospective study of 314 Queensland HIV-infected males on cART was conducted. The negative impact of ageing was assessed by estimating the probability of 5-year mortality; comparisons were made between an HIV-specific predictive tool (VACS index) and the Australian Bureau of Statistics (ABS) life-tables to examine potential differences attributed to HIV. The negative impact of ageing was also assessed by the prevalence of comorbidities. Associations between comorbidity and estimates of predicted mortality by regression analysis were assessed.

Results

The mean predicted 5-year mortality rate was 6% using the VACS index compared with 2.1% using the ABS life-table (p<0.001). The proportion of patients at predicted high risk of mortality (>9%) using the VACS index or ABS life-table were 17% and 1.8% respectively. Comorbidities were also more prevalent in this cohort compared with rates of comorbidities in age-matched Australian men from the general population. Metabolic disease (38.2%) was the most prevalent comorbidity followed by renal (33.1%) and cardiovascular disease (23.9%). Multivariate analysis demonstrated that patients with a history of cardiovascular disease had a higher predicted risk of mortality (OR=1.69;95%CI:1.17-2.45) whereas ex-smokers had a lower predicted risk of mortality (OR=0.61;95%CI:0.41-0.92).

Conclusions

Using the VACS Index there is an increased predicted risk of mortality in cART-treated HIV infected Australian men compared with age-matched men using the ABS data. This increased predicted mortality risk is associated with cardiovascular disease and the number of comorbidities per subject; which suggests that the VACS Index may discriminate between high and low predicted mortality risks in this population. However, until the VACS Index is validated in Australia this data may suggest the VACS Index overestimates predicted mortality risk in this country.     

Production of Excirolana armata (Dana, 1853) (Isopoda, Cirolanidae) on an exposed sandy beach in southeastern Brazil

The somatic and gonad productions of the cirolanid isopod Excirolana armata were analyzed by taking monthly samples from December 2003 to November 2005 on Una beach, S?o Paulo state (24°S), southeastern Brazil. Sampling was performed along three fixed transects established from the base of the foredunes to the waterline. Weight-specific growth rate was used to estimate the E. armata somatic production for 2004 and 2005, separately. The gonad production was estimated based on the monthly reproductive potential (mean number of eggs/embryos per female × monthly abundance of ovigerous females with near-release broods) for 2004. The annual somatic production of E. armata population varied from 15.57 to 17.25?g AFDW m^?1?year^?1 and the somatic production/biomass ratio (P _s/B) from 3.55 to 3.14?year^?1 for 2004 and 2005, respectively. The P _s/B ratios were higher for males (4.02 and 3.19?year^?1 for 2004 and 2005) than for females (3.10?year^?1 for both years). The annual gonad production (P _g?=?1.07?g AFDW m^?1?year^?1) contributed about 15 and 6% to the total production (P _s?+?P _g) of females and the population, respectively. The proportion of gonad to somatic production of females (P _g/P _s) increased with individual size (ca 90% in the 7.5?mm size class), and the annual weight-specific gonad production (P _g/B ratio) was estimated to 0.24?year^?1. The high P _s/B ratios estimated for E. armata derive from the fast growth of individuals and show the importance of this population to the energy flow on Una beach ecosystem. However, the low percentage of juveniles verified in this population and in other studies of populations of the genus Excirolana is discussed as an important source of underestimation of P _s/B ratio.     

Wind-powered wheel locomotion, initiated by leaping somersaults, in larvae of the southeastern beach tiger beetle (Cicindela dorsalis media)

Rapid movement is challenging for elongate, soft-bodied animals with short or no legs. Leaping is known for only a few animals with this "worm-like" morphology. Wheel locomotion, in which the animal's entire body rolls forward along a central axis, has been reported for only a handful of animals worldwide. Here we present the first documented case of wind-powered wheel locomotion, in larvae of the coastal tiger beetle Cicindela dorsalis media. When removed from their shallow burrows, larvae easily can be induced to enter a behavioral sequence that starts with leaping; while airborne, larvae loop their body into a rotating wheel and usually either "hit the ground rolling" or leap again. The direction larvae wheel is closely related to the direction in which winds are blowing; thus, all our larvae wheeled up-slope, as winds at our study site consistently blew from sea to land. Stronger winds increased both the proportion of larvae wheeling, and the distance traveled, exceeding 60 m in some cases. In addition, the proportion of larvae that wheel and the distance traveled by wheeling larvae are significantly greater on smooth sandy beaches than on beach surfaces made rough and irregular by pedestrian, equestrian, and vehicular traffic. Like other coastal species of tiger beetles, C. dorsalis media has suffered major declines in recent years that are clearly correlated with increased human impacts. The present study suggests that the negative effects of beach traffic may be indirect, preventing larvae from escaping from predators using wheel locomotion by disrupting the flat, hard surface necessary for efficient wheeling.     

Seasonal variations in nematode assemblages on an Australian temperate ocean beach; the effect of heavy seas and unusually high tides

Free-living nematodes inhabiting a sandy beach exposed to strong ocean waves were sampled at bimonthly intervals for two years. Six 1.3-litre core samples were taken on each occasion down to a depth of 60 cm. The numbers of each species and their status as juveniles, males and females (with or without eggs) was recorded. In the common species all these stages occur throughout the year, but the population increases in the warmer months of the year and falls to a much lower level in winter. Most species are dispersed throughout the sand to a depth of at least 60 cm, but several species where almost always found below the water table at about 60 cm. The faunal composition of the nematode assemblages changed significantly from month to month. Additional samples were taken to monitor the effects of very strong waves coupled with a very high tide which remodelled the beach. The nematode fauna was partially reconstituted by this event. It is concluded that the intertidal beach fauna is a dynamic extension of the near shore sub-littoral nematode fauna.     

Agglutinins from marine macroalgae of the southeastern United States

Protein extracts from 22 species of marine macroalgae from Florida and North Carolina were compared for their abilities to agglutinate sheep and rabbit erythrocytes. Protein extracts from 21 algal species agglutinated rabbit erythrocytes compared to 19 for sheep erythrocytes. However, agglutination by brown algal extracts was variable. The agglutination produced by protein extracts from Dictyota dichotoma could be blocked by addition of polyvinylpyrrolidone. Protein extracts from North Carolina macroalgae were also tested against five bacterial species. Three of these agglutinated bacterial cells. Ulva curvata and Bryopsis plumosa agglutinated all five species. Protein extracts from five species of Florida algae were tested for their effects on mitogenesis in mouse splenocytes and human lymphocytes. Gracilaria tikvahiae HBOI Strain G-5, Ulva rigida and Gracilaria verrucosa HBOI Strain G-16S stimulated mitogenesis in mouse splenocytes, while Gracilaria tikvahiae HBOI Strain G-16stimulated mitogenesis in human lymphocytes.