Response of microbial communities of Lake Baikal to extreme temperatures

The survival rate, metabolic activity, and ability for growth of microbial communities of Lake Baikal have been first studied after exposure to extremely low temperatures (freeze-thawing) for different lengths of time. It has been shown that short-term freezing (1–3 days) inhibits the growth and activity of microbial communities. The quantity of microorganisms increased after 7-and 15-day freezing. In the periods of maximums, the total number of microorganisms in the test samples was twice as high as in the control. It was established that after more prolonged freezing the microorganisms required more time after thawing to adapt to new conditions. In the variants with 7-and 15-day freezing, the activities of defrosted microbial communities were three or more times higher than in the control. The survival rate and activity of Baikal microorganisms after freeze-thawing confirms the fact that the Baikal microbial communities are highly resistant to this type of stress impact.     

Similar metabolic rate-temperature relationships after acclimation at constant and fluctuating temperatures in caterpillars of a sub-Antarctic moth

Temperature compensation in whole-animal metabolic rate is one of the responses thought, controversially, to characterize insects from low temperature environments. Temperature compensation may either involve a change in absolute values of metabolic rates or a change in the slope of the metabolic rate – temperature relationship. Moreover, assessments of compensation may be complicated by animal responses to fluctuating temperatures. Here we examined whole animal metabolic rates, at 0 °C, 5 °C, 10 °C and 15 °C, in caterpillars of the sub-Antarctic moth, Pringleophaga marioni Viette (Tineidae), following one week acclimations to 5 °C, 10 °C and 15 °C, and fluctuating temperatures of 0–10 °C, 5–15 °C, and 10–20 °C. Over the short term, temperature compensation was found following acclimation to 5 °C, but the effect size was small (3–14%). By comparison with caterpillars of 13 other lepidopteran species, no effect of temperature compensation was present, with the relationship between metabolic rate and temperature having a Q₁₀ of 2 among species, and no effect of latitude on temperature-corrected metabolic rate. Fluctuating temperature acclimations for the most part had little effect compared with constant temperatures of the same mean value. Nonetheless, fluctuating temperatures of 5–15 °C resulted in lower metabolic rates at all test temperatures compared with constant 10 °C acclimation, in keeping with expectations from the literature. Absence of significant responses, or those of large effect, in metabolic rates in response to acclimation, may be a consequence of the unpredictable temperature variation over the short-term on sub-Antarctic Marion Island, to which P. marioni is endemic.     

Degradation of acetochlor by four microbial communities

Four microbial communities capable of degrading acetochlor, designated A, D, E, and J, were obtained from acetochlor-contaminated soil and sludge. Acetochlor at an initial concentration of 55mg/L was completely degraded by the four mixed cultures after 4 days. At 80 mg/L acetochlor, more than 99% degradation was observed with D, 84% with A and E, and 88% with J after 9 days. There are primary eight strains of bacteria in community A, three in community D, E, and J, respectively. No single isolate was able to degrade acetochlor efficiently. The acetochlor biodegradation products were identified by gas chromatography-mass spectrometry. The probable degradative pathways of acetochlor involved dechlorination, hydroxylation, deethoxymethylation, cyclization, carboxylation, and decarboxylation. Propachlor, alachlor, and metolachlor, which are also the main components of the chloroacetanilide herbicide, could be degraded by the four mixed cultures to some degree. Given the high degradation rates observed here, the four mixed cultures obtained may be useful in the degradation processes of acetochlor.     

低龄婴幼儿龋微生物群落的研究进展

低龄婴幼儿龋（early childhood caries,ECC）是影响全世界儿童最常见的疾病之一,然而龋病并不是由单一致龋细菌引起,而是由微生物、宿主、饮食和时间,即“龋病病因四因素”之间复杂的相互作用所引起,其中微生物因素起着主要作用。口腔微生物之间存在着一种稳定关系,与宿主保持着和谐的生态平衡,一旦受到某种特殊环境改变的影响,这种平衡则可能被打破。到目前为止,国内外关于ECC的微生物群落研究方法很多,结果不尽相同,因此了解ECC的组成及动态变化对于儿童龋病的预防和防治极其重要。本文就ECC微生物群落的研究进展作一详细综述。     

基于宏组学方法认识微生物群落及其功能

进入后基因组学时代,测序技术飞速发展,测序成本明显下降,形成了涵盖宏基因组学、宏转录组学和宏蛋白质组学的宏组学技术,推动了对微生物群落的多样性、结构及潜在基因功能方面的深入研究。最近随着整合的宏组学技术的提出及应用,全面系统分析微生物群落动态变化及其代谢功能已成为可能,这将成为微生物生态学研究的新趋势。本文综述了宏组学在研究海洋湖泊、深海热泉、人体肠道、牛瘤胃生境、森林土壤与堆肥生境等环境中微生物群落的结构和功能方面的最新进展与成功应用案例。     

人体鼻咽部微生物群落多样性研究进展

定殖于鼻咽部的微生物与人体始终处于动态生态平衡,对于维持人体健康发挥着重要作用,也与多种上呼吸道疾病的发生发展有密切关系。鼻咽部微生物之间及其与宿主之间的相互作用是引发人体上呼吸道疾病的重要因素。微生物的培养方法与分子生物学技术的结合使人们越来越深入地了解人体鼻咽部微生物群落的组成和结构。定殖于人体鼻咽部的微生物以肺炎链球菌(Streptococcus pneumoniae)和流感嗜血杆菌(Haemophilus influenzae)等潜在致病菌为主。本文将分别从鼻咽部微生物与机体的平衡关系、鼻咽部微生物群落的研究方法以及鼻咽部微生物群落的组成及其相互关系三个方面,综述近年来鼻咽部微生物群落结构的相关研究进展,从而为指导实践提供可靠的理论依据。     

The in vitro effect of hydrogen peroxide on vaginal microbial communities

This study presents a series of experiments carried out in order to elucidate the role of H2O2 in antimicrobial activity of lactobacilli. Vaginal swabs were collected from 60 premenopausal women and checked for pH and Nugent score, and Lactobacillus species were cultured, phenotyped and genotyped. The main outcome measures involved: (1) species of vaginal lactobacilli most effective in liberating H2O2, (2) minimal microbicidal concentrations of added H2O2, (3) kinetics of H2O2 liberation in relation to oxygen tension, (4) antimicrobial activity of pure H2O2 versus one produced by selected vaginal lactobacilli and the total activity of their culture supernatants. Results showed that H2O2 was liberated especially by: Lactobacillus delbrueckii, Lactobacillus acidophilus, Lactobacillus crispatus, Lactobacillus johnsonii and L. gasseri. Hydrogen peroxide reached concentrations from 0.05 to 1.0 mM, which under intensive aeration increased even up to 1.8 mM. Microorganisms related to vaginal pathologies show varied resistance to the action of pure H2O2. Most potent inhibitory activity against bacteria and yeasts was presented by Lactobacillus culture supernate producing H2O2, followed by the nonproducing strain and pure H2O2. To conclude - the antimicrobial activity of lactobacilli is a summation of various inhibitory mechanisms in which H2O2 plays some but not a crucial role, in addition to other substances.     

用PFU微型生物群落监测技术评价化工废水的静态毒性

化工废水的排放是导致水环境毒物污染的重要来源,以原生动物为靶生物的微型生物群落监测——PFU法因能快速而真实地评价水体受污染程度而被广泛应用.盐城沿海化工园区是至今江苏省环保部门批准建设的苏北地区规模最大的以发展精细化工和医药化工为主导的专业园区,以该园区附近清洁水源中的原生动物为种源,用PFU法评价该园区化工废水的静态毒性.结果表明,原生动物群落对化工废水效应浓度(EC)变化非常敏感.在低的化工废水EC下,原生动物群落群集的物种多样性指数和群集种类均随毒性时间的延长而快速增加,群集速度也较快;随着化工废水EC的增加,原生动物群落群集的物种多样性指数随毒性时间的延长而增加缓慢甚至下降,群集种类则明显减少,群集速度也减缓,说明化工废水EC有较强的生物胁迫效应.在反映原生动物群集过程的3个参数Seq、G和T90％中,Seq与化工废水EC均呈负相关,而G随化工废水EC增加先呈负相关后呈正相关.根据其回归方程Seq=-0.141 EC+19.05 (R2=0.941,P＜0.01)推算出该化工废水的效应浓度EC5、EC20和EC50分别为7.1％、27.3％和67.7％.最终确定盐城沿海化工园区化工废水对其附近清洁水源原生动物群落的安全浓度为7.1％,最大允许浓度为27.3％.盐城沿海化工园区化工废水必须处理至其毒性削减72.7％以上才能排放.     

Growth,stress, and acclimation responses to fluctuating temperatures in field and domesticated populations of Manduca sexta

Diurnal fluctuations in temperature are ubiquitous in terrestrial environments, and insects and other ectotherms have evolved to tolerate or acclimate to such fluctuations. Few studies have examined whether ectotherms acclimate to diurnal temperature fluctuations, or how natural and domesticated populations differ in their responses to diurnal fluctuations. We examine how diurnally fluctuating temperatures during development affect growth, acclimation, and stress responses for two populations of Manduca sexta: a field population that typically experiences wide variation in mean and fluctuations in temperature, and a laboratory population that has been domesticated in nearly constant temperatures for more than 300 generations. Laboratory experiments showed that diurnal fluctuations throughout larval development reduced pupal mass for the laboratory but not the field population. The differing effects of diurnal fluctuations were greatest at higher mean temperature (30°C): Here diurnal fluctuations reduced pupal mass and increased pupal development time for the laboratory population, but had little effect for the field population. We also evaluated how mean and fluctuations in temperature during early larval development affected growth rate during the final larval instar as a function of test temperature. At an intermediate (25°C) mean temperature, both the laboratory and field population showed a positive acclimation response to diurnal fluctuations, in which subsequent growth rate was significantly higher at most test temperatures. In contrast at higher mean temperature (30°C), diurnal fluctuations significantly reduced subsequent growth rate at most test temperatures for the laboratory population, but not for the field population. These results suggest that during domestication in constant temperatures, the laboratory population has lost the capacity to tolerate or acclimate to high and fluctuating temperatures. Population differences in acclimation capacity in response to temperature fluctuations have not been previously demonstrated, but they may be important for understanding the evolution of reaction norms and performance curves.     

A new thermostat-controlled water-bath which provides eight constant temperatures for the price of one

A water-bath-system which simultaneously provides eight different temperatures for rearing aquatic organisms is presented. Temperatures ranged from 4 to 18 °C, at 2 ± 0.3 °C intervals. It has an useful area of c. 1 m², but can be adapted easily to any specific requirement. It is inexpensive (c. U.S.$1200), requiring only simple technical equipment.     

The pattern of recovery of disturbed microbial communities inhabiting hard substrates

The recovery of microbial communities removed from hard substrates was studied in the laboratory and on microepiphyton in the White Sea, in St. Petersburg, and in Karelija. The removal of these communities from hard substrates destroyed their spatial structure. Recovery was allowed to proceed from the suspension on a horizontal substrate in stagnant water at low temperature. The sequence of colonization in the laboratory was the same as that in the field. Laboratory recovery was complete in 12–24 h and did not depend on the age of the natural community. From the comparison between laboratory and field data on such mechanical disturbance, a pattern of recovery, termed ‘self-assembly’, is proposed. This revised version was published online in September 2006 with corrections to the Cover Date.     

The effects of long-term nitrogen loading on grassland insect communities

Just as long-term nitrogen loading of grasslands decreases plant species richness and increases plant biomass, we have found that nitrogen loading decreases insect species richness and increases insect abundances. We sampled 54 plots that had been maintained at various rates of nitrogen addition for 14 years. Total insect species richness and effective insect diversity, as well as herbivore and predator species richness, were significantly, negatively related to the rate of nitrogen addition. However, there was variation in trophic responses to nitrogen. Detritivore species richness increased as nitrogen addition increased, and parasitoids showed no response. Insect abundances, measured as the number of insects and insect biovolume (an estimate of biomass), were significantly, positively related to the rate of nitrogen addition, as were the abundances of herbivores and detritivores. Parasitoid abundance was negatively related to the rate of nitrogen addition. Changes in the insect community were correlated with changes in the plant community. As rates of nitrogen addition increased, plant species richness decreased, plant productivity and plant tissue nitrogen increased, and plant composition shifted from C₄ to C₃ grass species. Along this gradient, total insect species richness and effective insect diversity were most strongly, positively correlated with plant species richness. Insect biovolume was negatively correlated with plant species richness. Responses of individual herbivores varied along the nitrogen gradient, but numbers of 13 of the 18 most abundant herbivores were positively correlated with their host plant biomass. Although insect communities did not respond as strongly as plant communities, insect species richness, abundance, and composition were impacted by nitrogen addition. This study demonstrates that long-term nitrogen loading affects the entire food chain, simplifying both plant and insect communities. Received: 18 May 1999 / Accepted: 5 January 2000     

Spatial distribution of microbial communities in the cystic fibrosis lung

Cystic fibrosis (CF) is a common fatal genetic disorder with mortality most often resulting from microbial infections of the lungs. Culture-independent studies of CF-associated microbial communities have indicated that microbial diversity in the CF airways is much higher than suggested by culturing alone. However, these studies have relied on indirect methods to sample the CF lung such as expectorated sputum and bronchoalveolar lavage (BAL). Here, we characterize the diversity of microbial communities in tissue sections from anatomically distinct regions of the CF lung using barcoded 16S amplicon pyrosequencing. Microbial communities differed significantly between different areas of the lungs, and few taxa were common to microbial communities in all anatomical regions surveyed. Our results indicate that CF lung infections are not only polymicrobial, but also spatially heterogeneous suggesting that treatment regimes tailored to dominant populations in sputum or BAL samples may be ineffective against infections in some areas of the lung.     

Effects of heavy metals on microbial activity of water and sediment communities

The effects of Cd²⁺, Cr³⁺ and Zn²⁺ on the microbial activity of water and sediment samples from a contaminated stream were studied. The maximum [¹⁴C]glucose uptake (V_max) and the mineralization (¹⁴CO₂) rates were determined. A 10% reduction in V_max was obtained at lower metal concentrations in water samples than in sediment ones. Moreover, a 10% decrease in ¹⁴CO₂ was observed at significantly minor metal levels, so ¹⁴CO₂ was more sensitive to evaluated heavy metal pollution. On the basis of MICs obtained for both communities, they were more sensitive to Cd²⁺ than to Cr³⁺ and Zn²⁺. Zinc was less inhibitory to V_max and ¹⁴CO₂ rates; Cr³⁺ showed an intermediate toxicity, and Cd²⁺ was 10–100 times more inhibitory than the other metals.     

Transgenic Bt cotton has no apparent effect on enzymatic activities or functional diversity of microbial communities in rhizosphere soil

A transgenic Bt cotton (Sukang-103) and its non-Bt cotton counterpart (Sumian-12) were investigated to evaluate the potential risk of transgenes on the soil ecosystem. The activities of urease, phosphatase, dehydrogenase, phenol oxidase, and protease in cotton rhizosphere were assayed during the vegetative, reproductive, and senescing stages of cotton growth and after harvest. A Biolog system was used to evaluate the functional diversity of microbial communities in soils after a complete cotton growth cycle. Enzymatic activities in soils amended with cotton biomass were also assayed. Results showed that there were few significant differences in enzyme activities between Bt and non-Bt cottons at any of the growth stages and after harvest; amendment with cotton biomass to soil enhanced soil enzyme activities, but there were no significant difference between Bt and non-Bt cotton; the richness of the microbial communities in rhizosphere soil did not differ between Bt and the non-Bt cotton, and close to that of control soil; the functional diversity of microbial communities were not different in rhizosphere soils between Bt and non-Bt cotton. All results suggested that there was no evidence to indicate any adverse effects of Bt cotton on the soil ecosystem in this study.     

Population development of Frankliniella occidentalis and Thrips hawaiiensis in constant and fluctuating temperatures

Temperature fluctuations may influence the behaviour of insects. Frankliniella occidentalis and Thrips hawaiiensis are sympatric pests on flower and vegetable host plants in China. This study evaluated the influence of constant (23.0°C) and fluctuating temperatures (average of 23.0°C) on the population development of these two species. The results showed that both of these pests showed faster development and higher fecundity at a constant temperature than at fluctuating temperatures when fed on Rosa rugosa flowers, and F. occidentalis showed faster development and higher fecundity than T. hawaiiensis under both conditions. Under the constant and fluctuating temperatures, the development times from egg to adult were 9.57 and 10.62 day for F. occidentalis and 10.71 and 11.82 day for T. hawaiiensis, respectively. The total numbers of first instar nymph produced were 103.08 and 86.32 by F. occidentalis, 86.96 and 73.32 by T. hawaiiensis, under the constant and fluctuating temperatures, respectively, and a higher intrinsic rate of natural increase (r_m) (0.173 and 0.160) and R₀ (46.31 and 36.86) were obtained in F. occidentalis compared with T. hawaiiensis (r_m for 0.154 and 0.141 and R₀ for 34.46 and 27.81, respectively). Our results indicate that the constant temperature had a positive effect on the population development of both F. occidentalis and T. hawaiiensis. Furthermore, F. occidentalis showed a stronger adaptability over T. hawaiiensis at both constant and fluctuating temperatures, according to its faster development and higher fecundity. These results may contribute to the better understanding of the biology of different thrip species, especially the interspecific competition between invasive and native thrips under the changing environment. These findings also provide basic data for the thrip pests control by using fluctuating temperatures.     

The growth of largemouth bass, Micropterus salmoides (Lacepede), under constant and fluctuating temperatures

Growth of largemouth bass, Micropterus salmoides , was tested under constant (15° C, 29° C) and cyclic (18 h at 15°C, 6 h at 29° C) temperature conditions. Six groups of 10 fish each were tested; one group under each constant condition, and four groups in the thermocycles. The four latter groups differed in the timing of their feeding; one group each was fed at the start and middle of the warm and cool periods, respectively. All groups were fed to near-satiation. The fish fed at the start of the warm cycle and start cool group grew most rapidly, followed by the constant warm, mid warm, mid cool, and constant cool groups. These data were evaluated in relation to vertical migrations of fish to test the physiological enhancements that may be important to vertical migrations. Apparently thermocycles allow more rapid consumption of food than constant cool conditions and lower metabolic rates than constant warm conditions, which allows some fish to grow more rapidly under thermocycles than under constant conditions at either extreme of the cycle. However, the timing of feeding in relation to temperature in the thermocycle is important in the degree of growth enhancement.     

The consequences of freezing temperatures followed by high irradiance on in vivo chlorophyll fluorescence and growth in Picea abies

Picea abies (L.) Karst. plants, propagated by cuttings, were subjected to one night of freezing temperatures (-5°C), high irradiance (1 200 or 1 800 μmol m⁻² s⁻¹), or freezing temperatures followed by high irradiance. The treatments were applied at bud burst, at time of shoot elongation, and when the shoots had ceased to elongate. The maximum quantum yield of photosynthesis, F_v/F_m, dry weight of branches and needles, and length and survival of shoots were measured. F_v/F_m and growth decreased after a night of freezing temperatures followed by high irradiance, at the time of bud burst and shoot elongation. High irradiance alone influenced F_v/F_m, but not growth. Freezing temperatures affected F_v/F_m, and growth at the time of shoot elongation. F₀ increased after a night of freezing temperatures and decreased with age of the current-year needles. It was concluded that the use of short-term measurements of chlorophyll fluorescence induction to predict changes in growth after a night of frost and subsequent high light was not a reliable method.     

The effects of constant and changing temperatures on the period from egg hatching to egg laying in Tanymastix stagnalis

The main duration of time from egg hatching to egg laying (D) in this anostracan crustacean increases at lower constant temperatures. The mean number of eggs per female lay between 25 and 50. In both regularly changing temperature experiments D was significantly increased (P<.05). This may be due to an increase in length of adult life which would also account for the increase in number of eggs per female to about 100. The relation of the results to the life and survival strategy of the animal in Ireland in discussed.