Diverse Responses to UV-B Radiation and Repair Mechanisms of Bacteria Isolated from High-Altitude Aquatic Environments

Acinetobacter johnsonii A2 isolated from the natural community of Laguna Azul (Andean Mountains at 4,560 m above sea level), Serratia marcescens MF42, Pseudomonas sp. strain MF8 isolated from the planktonic community, and Cytophaga sp. strain MF7 isolated from the benthic community from Laguna Pozuelos (Andean Puna at 3,600 m above sea level) were subjected to UV-B (3,931 J m⁻²) irradiation. In addition, a marine Pseudomonas putida strain, 2IDINH, and a second Acinetobacter johnsonii strain, ATCC 17909, were used as external controls. Resistance to UV-B and kinetic rates of light-dependent (UV-A [315 to 400 nm] and cool white light [400 to 700 nm]) and -independent reactivation following exposure were determined by measuring the survival (expressed as CFU) and accumulation of cyclobutane pyrimidine dimers (CPD). Significant differences in survival after UV-B irradiation were observed: Acinetobacter johnsonii A2, 48%; Acinetobacter johnsonii ATCC 17909, 20%; Pseudomonas sp. strain MF8, 40%; marine Pseudomonas putida strain 2IDINH, 12%; Cytophaga sp. strain MF7, 20%; and Serratia marcescens, 21%. Most bacteria exhibited little DNA damage (between 40 and 80 CPD/Mb), except for the benthic isolate Cytophaga sp. strain MF7 (400 CPD/Mb) and Acinetobacter johnsonii ATCC 17909 (160 CPD/Mb). The recovery strategies through dark and light repair were different in all strains. The most efficient in recovering were both Acinetobacter johnsonii A2 and Cytophaga sp. strain MF7; Serratia marcescens MF42 showed intermediate recovery, and in both Pseudomonas strains, recovery was essentially zero. The UV-B responses and recovery abilities of the different bacteria were consistent with the irradiation levels in their native environment.     

多蒴灰藓对强紫外线照射的生理响应

将多蒴灰藓(Hypnum fertile)置于紫外辐射下照光3周,研究了紫外辐射对多蒴灰藓的损害及其生理响应。结果表明： 与对照(自然环境)相比,多蒴灰藓的叶绿素和类胡萝卜素含量均随紫外辐射时间的延长而减少,MDA含量却明显增加,SOD、POD和CAT活性也相应增加;增加紫外辐射量会引起多蒴灰藓的氧化胁迫,其能通过增加抗氧化酶的活性来减轻这种胁迫。     

Diverse UV-B Resistance of Culturable Bacterial Community from High-Altitude Wetland Water

Isolation of most ultraviolet B (UV-B)-resistant culturable bacteria that occur in the habitat of Laguna Azul, a high-altitude wetland [4554 m above sea level (asl)] from the Northwestern Argentinean Andes, was carried out by culture-based methods. Water from this environment was exposed to UV-B radiation under laboratory conditions during 36 h, at an irradiance of 4.94 W/m². It was found that the total number of bacteria in water samples decreased; however, most of the community survived long-term irradiation (312 nm) (53.3 kJ/m²). The percentage of bacteria belonging to dominant species did not vary significantly, depending on the number of UV irradiation doses. The most resistant microbes in the culturable community were Gram-positive pigmented species (Bacillus megaterium [endospores and/or vegetative cells], Staphylococcus saprophyticus, and Nocardia sp.). Only one Gram-negative bacterium could be cultivated (Acinetobacter johnsonii). Nocardia sp. that survived doses of 3201 kJ/m² were the most resistant bacteria to UV-B treatment. This study is the first report on UV-B resistance of a microbial community isolated from high-altitude extreme environments, and proposes a method for direct isolation of UV-B-resistant bacteria from extreme irradiated environments. This article is dedicated to the memory of Carolina Colin.     

Responses of Pea and Triticale Photosynthesis and Growth to Long-wave UV-B Radiation

Pea plants were more susceptible to long-wave UV-B irradiation (305 – 320 nm, 7.7 kJ m^–2 d^–1, 4 weeks) in comparison with the triticale. This difference was more apparent from the changes in total area of leaves and dry mass of shoots, rather than from the parameters of chlorophyll fluorescence and net photosynthetic rate.     

Effect of Solar UV-B Radiation on a Phyllosphere Bacterial Community

The effect of solar UV-B radiation on the population dynamics and composition of the culturable bacterial community from peanut (Arachis hypogeae L.) was examined in field studies using plants grown under UV-B−transmitting (UV-B+) or UV-B−excluding (UV-B−) plastic filters. Our data demonstrate that solar UV-B selection alters phyllosphere bacterial community composition and that UV tolerance is a prevalent phenotype late in the season. The total bacterial population size was not affected by either UV-B treatment. However, isolates from the UV-B+ plots (n = 368) were significantly more UV tolerant than those from the UV-B− (n = 363) plots. UV sensitivity was determined as the minimal inhibitory dose of UV that resulted in an inhibition of growth compared to the growth of a nonirradiated control. The difference in minimal inhibitory doses among bacterial isolates from UV-B+ and UV-B− treatments was mainly partitioned among nonpigmented isolates, with pigmented isolates as a group being characterized as UV tolerant. A large increase in UV tolerance was observed within isolate groups collected late (89 and 96 days after planting) in the season. Identification of 200 late-season isolates indicated that the predominant UV-tolerant members of this group were Bacillus coagulans, Clavibacter michiganensis, and Curtobacterium flaccumfaciens. We selected C. michiganensis as a model UV-tolerant epiphyte to study if cell survival on UV-irradiated peanut leaves was increased relative to UV survival in vitro. The results showed an enhancement in the survival of C. michiganensis G7.1, especially following high UV-C doses (300 and 375 J m⁻²), that was evident between 24 and 96 h after inoculation. A dramatic increase in the in planta/in vitro survival ratio was observed over the entire 96-h experiment period for C. michiganensis T5.1.     

增补UV-B辐射对菥蓂生理特性及次生代谢产物的影响

为了解药用植物菥蓂(Thlaspi arvense)在紫外线(UV-B)辐射增强下生长及响应规律,以2月龄菥蓂幼苗为研究对象,在自然光照基础上人工增补3.26μW·cm^-2(T1)和9.78μW·cm^-2(T2)2种不同辐射强度处理,以自然光照下生长的菥蓂幼苗为对照,研究菥蓂幼苗中光合指标和叶绿素荧光参数、光合色素(叶绿素a和b)含量、渗透调节物质(丙二醛、可溶性蛋白、可溶性糖和脯氨酸)含量、抗氧化酶(超氧化物歧化酶、过氧化物酶、过氧化氢酶和抗坏血酸过氧化氢酶)活性和总黄酮、总酚和黑芥子苷等次生代谢产物含量对不同UV-B辐射强度的响应。结果表明：2种辐射强度下净光合速率、气孔导度、蒸腾速率、胞间二氧化碳摩尔分数、最大荧光(F_m)、PSⅡ最大光化学效率(F_v/F_m)和PSⅡ潜在光化学效率(F_v/F_o)均随辐射强度增大而降低;叶绿素a和叶绿素b、可溶性蛋白、可溶性糖和脯氨酸等渗透调节物质、超氧化物歧化酶、过氧化物酶、过氧化氢酶和抗坏血酸过...     

Effects of Prolonged UV-B Enhanced Fluorescent Radiation on Some Marine Microalgae

The eukaryotic unicellular microalgae Chlorella salina, Dicrateria inornata, and Isochrysis galbana were grown under control (fluorescent 20 W m^–2) and UV-B enhanced (UV-B^E, 0.5 W m^–2) fluorescent radiation. The growth rate showed marginal increase under UV-B^E. Decrease in protein content was observed in Dicrateria cells but in Chlorella an initial increase up to 4 d and in Isochrysis an increase at days 4 and 5 was noted. The chlorophyll a content showed marked increase in Chlorella and Isochrysis but in Dicrateria a decline was found. UV-B^E reduced the photosynthetic activity in all three species, but the reduction was larger in Chlorella and Dicrateria. Fluorescence excitation spectra for F₆₈₂ in Chlorella cells grown for 5 d under UV-B^E showed reduction in all peaks. In contrast to this, in Dicrateria and Isochrysis cells, the 530 and 590 nm excitation peaks increased with an appreciable decrease in the 466 nm peak. SDS-PAGE analysis revealed significant decrease in the contents of 47, 33, and 23 kDa polypeptides in Chlorella cells. In Dicrateria cells, significant loss in the content of 55, 38, and 18 kDa polypeptides was observed. The content of low molecular mass polypeptides (15 kDa) remained unaffected. Isochrysis cells were more stable in preserving the content of thylakoid polypeptides.     

Responses of Nine Bryophyte and One Lichen Species from Different Microhabitats to Elevated UV-B Radiation

Chlorophyll fluorescence parameters (F_v/F_m, R_Fd) of nine bryophyte and one lichen species were investigated after prolonged exposure to elevated UV-B radiation. The majority of the investigated bryophytes showed a prompt or inducible tolerance to increase UV-B irradiation. Among the investigated species high degree of UV-tolerance coincides with strong desiccation tolerance.     

Ubiquity and Diversity of Heterotrophic Bacterial nasA Genes in Diverse Marine Environments

Nitrate uptake by heterotrophic bacteria plays an important role in marine N cycling. However, few studies have investigated the diversity of environmental nitrate assimilating bacteria (NAB). In this study, the diversity and biogeographical distribution of NAB in several global oceans and particularly in the western Pacific marginal seas were investigated using both cultivation and culture-independent molecular approaches. Phylogenetic analyses based on 16S rRNA and nasA (encoding the large subunit of the assimilatory nitrate reductase) gene sequences indicated that the cultivable NAB in South China Sea belonged to the α-Proteobacteria, γ-Proteobacteria and CFB (Cytophaga-Flavobacteria-Bacteroides) bacterial groups. In all the environmental samples of the present study, α-Proteobacteria, γ-Proteobacteria and Bacteroidetes were found to be the dominant nasA-harboring bacteria. Almost all of the α-Proteobacteria OTUs were classified into three Roseobacter-like groups (I to III). Clone library analysis revealed previously underestimated nasA diversity; e.g. the nasA gene sequences affiliated with β-Proteobacteria, ε-Proteobacteria and Lentisphaerae were observed in the field investigation for the first time, to the best of our knowledge. The geographical and vertical distributions of seawater nasA-harboring bacteria indicated that NAB were highly diverse and ubiquitously distributed in the studied marginal seas and world oceans. Niche adaptation and separation and/or limited dispersal might mediate the NAB composition and community structure in different water bodies. In the shallow-water Kueishantao hydrothermal vent environment, chemolithoautotrophic sulfur-oxidizing bacteria were the primary NAB, indicating a unique nitrate-assimilating community in this extreme environment. In the coastal water of the East China Sea, the relative abundance of Alteromonas and Roseobacter-like nasA gene sequences responded closely to algal blooms, indicating that NAB may be active participants contributing to the bloom dynamics. Our statistical results suggested that salinity, temperature and nitrate may be some of the key environmental factors controlling the composition and dynamics of the marine NAB communities.     

Interspecific Variability in Sensitivity to UV Radiation and Subsequent Recovery in Selected Isolates of Marine Bacteria

The interspecific variability in the sensitivity of marine bacterial isolates to UV-B (295- to 320-nm) radiation and their ability to recover from previous UV-B stress were examined. Isolates originating from different microenvironments of the northern Adriatic Sea were transferred to aged seawater and exposed to artificial UV-B radiation for 4 h and subsequently to different radiation regimens excluding UV-B to determine the recovery from UV-B stress. Bacterial activity was assessed by thymidine and leucine incorporation measurements prior to and immediately after the exposure to UV-B and after the subsequent exposure to the different radiation regimens. Large interspecific differences among the 11 bacterial isolates were found in the sensitivity to UV-B, ranging from 21 to 92% inhibition of leucine incorporation compared to the bacterial activity measured in dark controls and from 14 to 84% for thymidine incorporation. Interspecific differences in the recovery from the UV stress were also large. An inverse relation was detectable between the ability to recover under dark conditions and the recovery under photosynthetic active radiation (400 to 700 nm). The observed large interspecific differences in the sensitivity to UV-B radiation and even more so in the subsequent recovery from UV-B stress are not related to the prevailing radiation conditions of the microhabitats from which the bacterial isolates originate. Based on our investigations on the 11 marine isolates, we conclude that there are large interspecific differences in the sensitivity to UV-B radiation and even larger differences in the mechanisms of recovery from previous UV stress. This might lead to UV-mediated shifts in the bacterioplankton community composition in marine surface waters.     

UV-B辐射诱导芒果叶片抗氧化响应研究

为了解增强UV-B辐射诱导芒果叶片抗氧化响应的机制,以?台农1号?芒果(Mangifera indica?Tainong No. 1?)成年树为材料,以自然光为对照(CK),设置24和96 kJ/(m~2·d)两个增强UV-B辐射处理水平,观测叶片生理生化指标的动态变化。结果表明,24k J/(m~2·d)处理的芒果叶片MDA含量、相对电导率、净光合速率、抗氧化酶活性、多酚、Vc和芒果苷含量均与对照没有显著差异,而类黄酮和还原型GSH含量显著高于对照;而96 kJ/(m~2·d)处理的芒果叶片MDA含量、相对电导率、抗氧化酶活性及多酚、类黄酮、还原型GSH、芒果苷等还原型保护成分的含量均显著高于对照,而净光合速率和Vc含量均显著低于对照。因此,24 kJ/(m~2·d) UV-B辐射未引起?台农1号?芒果成年树损伤,可能是通过提高类黄酮和还原型GSH的含量来清除活性氧自由基;96 kJ/(m~2·d)处理则引起叶片活性氧损伤,但仍可能以两种机制减轻损伤,一是通过增强抗氧化酶活性和提高还原性成分含量来清除活性氧自由基,二是利用芒果苷、类黄酮和还原型GSH等成分吸收UV-B辐射。     

植物响应UV-B辐射的研究进展

地表UV-B辐射的增强对植物的生长生理产生了多方面影响。随着研究的不断深入, 人们认识到UV-B辐射不仅是一种胁迫因子, 而且是一个重要的信号调节分子。该文论述了近年来植物响应UV-B辐射研究的一系列成果, 包括UV-B辐射对植物形态建成、生理代谢、UV-B光受体UVR8蛋白、细胞程序性死亡、细胞骨架和细胞周期的影响, 及其它因素与UV-B复合处理对植物的作用; 并对植物响应UV-B辐射研究进行了望。     

Diverse Bacterial Microcompartment Organelles

SUMMARY

Bacterial microcompartments (MCPs) are sophisticated protein-based organelles used to optimize metabolic pathways. They consist of metabolic enzymes encapsulated within a protein shell, which creates an ideal environment for catalysis and facilitates the channeling of toxic/volatile intermediates to downstream enzymes. The metabolic processes that require MCPs are diverse and widely distributed and play important roles in global carbon fixation and bacterial pathogenesis. The protein shells of MCPs are thought to selectively control the movement of enzyme cofactors, substrates, and products (including toxic or volatile intermediates) between the MCP interior and the cytoplasm of the cell using both passive electrostatic/steric and dynamic gated mechanisms. Evidence suggests that specialized shell proteins conduct electrons between the cytoplasm and the lumen of the MCP and/or help rebuild damaged iron-sulfur centers in the encapsulated enzymes. The MCP shell is elaborated through a family of small proteins whose structural core is known as a bacterial microcompartment (BMC) domain. BMC domain proteins oligomerize into flat, hexagonally shaped tiles, which assemble into extended protein sheets that form the facets of the shell. Shape complementarity along the edges allows different types of BMC domain proteins to form mixed sheets, while sequence variation provides functional diversification. Recent studies have also revealed targeting sequences that mediate protein encapsulation within MCPs, scaffolding proteins that organize lumen enzymes and the use of private cofactor pools (NAD/H and coenzyme A [HS-CoA]) to facilitate cofactor homeostasis. Although much remains to be learned, our growing understanding of MCPs is providing a basis for bioengineering of protein-based containers for the production of chemicals/pharmaceuticals and for use as molecular delivery vehicles.     

一株北极小球藻Chlorella sp.的分离鉴定及其对增强的UV-B辐射的生理生化响应

为了了解微藻对UV-B辐射增强效应的响应,以一种分离纯化于北极冰川融水的淡水微藻（Chlorella sp.）为实验材料,在不同强度UV-B辐射下对其生长、生化组分和细胞超微结构等进行了研究。研究结果显示：3种不同强度的UV-B（22μW/cm2,45μW/cm2,70μW/cm2）辐射均可导致藻的比生长速率及色素含量下降,且辐射强度越强,两者的下降越明显;而MDA含量和SOD活性会随辐照强度的增强而提高。表明辐射强度增强,UV-B对藻的伤害程度加大,而该小球藻SOD活性随UV-B强度增强而提高,表明其对上升的UV-B辐射有一定的适应能力。     

Responses of aquatic algae and cyanobacteria to solar UV-B

Continuous depletion of the stratospheric ozone layer has resulted in an increase in solar ultraviolet-B (UV-B; 280–315 nm) radiation reaching the Earth's surface. The consequences for aquatic phototrophic organisms of this small change in the solar spectrum are currently uncertain. UV radiation has been shown to adversely affect a number of photochemical and photobiological processes in a wide variety of aquatic organisms, such as cyanobacteria, phytoplankton and macroalgae. However, a number of photosynthetic organisms counteract the damaging effects of UV-B by synthesizing UV protective compounds such as mycosporine-like amino acids (MAAs) and the cyanobacterial sheath pigment, scytonemin. The aim of this contribution is to discuss the responses of algae and cyanobacteria to solar UV-B radiation and the role of photoprotective compounds in mitigating UV-B damage.     

川草2号老芒麦（Elymus sibiricus L.）UV-B辐射敏感基因rbcL的克隆及其调控表达研究

rbcL是编码光合关键酶1,5-二磷酸核酮糖羧化酶（Rubisco）大亚基的基因。本文运用mRNA差异显示技术（DDRT-PCR）并通过5ˊRACE (Rapid Amplification of cDNA Ends) 从高原植物川草2号老芒麦（Elymus sibiricus L. cv. 'chuancao No.2'）中获得了受增强UV-B辐射抑制的rbcL基因,该基因全长cDNA为1.51kb,开放阅读框（ORF）长1.434kb,编码477个氨基酸。氨基酸序列与Elymus trachycaulus中的Rubisco大亚基具有97％的同源性、与Triticum aestivum和Hordeum comosum的Rubisco大亚基同源性均为 98％。Northern杂交分析表明,增强UV-B辐射后6h,rbcL基因表达受到强烈抑制,处理后60h,其表达几乎完全被抑制,表明即使是长期生长在高原地区、强UV-B辐射条件下的高原物种,在受到较强的UV-B辐射后,其rbcL基因的转录也会受到抑制。     

蓝藻对UV-B增强的响应与适应

平流层臭氧破坏导致地球表面紫外辐射(主要是UV-B)增强逐渐受到人们重视。由于蓝藻在生态系统中的重要性和在生物进化过程中的特殊性,用于研究UV-B对生物体的影响具有诸多优势。目前国内关于UV-B与蓝藻的研究报道较少,所以本文介绍了近年来国外该领域的相关研究,主要包括UV-B对蓝藻生物量、光合机构以及固氮等方面的影响,同时着重介绍了蓝藻对UV-B的适应策略。     

Tryptophanase in Diverse Bacterial Species

The distribution of tryptophanase was studied. The highest observed specific activity, mumoles per minute per milligram (dry weight) cells, is given in parentheses after each species. Tryptophanase was inducible and repressible in Escherichia coli (.914), Paracolobactrum coliforme (.210), Proteus vulgaris (.146), Aeromonas liquefaciens (.030), Photobacterium harveyi (.035), Sphaerophorus varius (.021), Bacteroides sp. (.048), and Corynebacterium acnes (.042). The enzyme was constitutive and nonrepressible in Bacillus alvei (.013), and was inducible but not repressible by glucose in Micrococcus aerogenes (.036). Indole-positive bacteria were found in fecal or intestinal samples from a variety of animals among the mammals, reptiles, insects, molluscs, fish, crustaceans, and amphibians.