Increasing batch-to-batch reproducibility of CHO cultures by robust open-loop control

In order to guarantee the quality of recombinant therapeutic proteins produced in mammalian cell systems, the straightforward approach in industry is to run the processes as reproducible as possible. It is first shown that considerable distortions in the currently operated processes appear when the initial cell density deviates from its nominal value. Small deviations in the initial cell mass may lead to severe deviations from the desired biomass trajectory. Next, it is shown how to design a fed-batch production process in such a way that it is robust with respect to variations in the viable cell density. A simple open loop strategy is proposed for that purpose. Here we show for the first time at animal cell cultures (CHO cells) that by means of an appropriate glutamine feed rate profile F(t), which keeps the specific growth rate of the cells on a predefined value below its maximal value while maintaining the viabilities on a high level, the diverging viable cell count profiles change over into a robust converging set of profiles. The CHO cells used to validate the procedure could be focused to any specific growth rates below μ_max.     

A remote sensing approach to estimating harvestable kelp biomass

Regulations of the Alaska Department of Fish and Game require that all fisheries in the state have a harvest management plan. In southeast Alaska two species of floating kelps, Nereocystis luetkeana and Alaria fistulosa, have been commercially harvested since 1992 for use as agrochemicals by the Alaska Kelp Company. However, there is currently no harvest management plan for this fishery. The lack of a formalized management plan is one factor that has kept the kelp industry from expanding in the state. We have employed an aerial digital multispectral imaging system (DMSC) calibrated with ground truthing for performing such an assessment. The system can be flown at varying altitudes to achieve spatial resolutions ranging from 0.5 to 2 m. Rapid ground truthing techniques were developed using morphometric measurements to predict biomass. Analysis of the DMSC imagery showed that good correlations could be developed between the multispectral imagery and kelp biomass estimates collected at the ground-truth sites. Repeatable estimates of kelp bed area derived from the multispectral imagery could be made at varying tidal levels. However, broad scale maps of kelp biomass suitable for estimating harvest rates could not be made at different tide levels. Multispectral imagery suitable for this purpose must be collected at a standard tidal level.     

Improved immobilization of <Emphasis Type="Italic">Lactobacillus rhamnosus</Emphasis> ATCC 7469 in polyacrylamide gel,preventing cell leakage during lactic acid fermentation

A new procedure for improved immobilization of Lactobacillus rhamnosus ATCC 7469, producing solely l(+)-lactic acid, in polyacrylamide was developed. A series of gels with varied ingredients concentrations and order of addition was prepared and were tested in batch and repeat-batch processes. Our results revealed that the crucial step for successful immobilization was the initial incubation of the cells in pure 10% AA that leads to improved entrapment in the polyacrylamide gel. In contrast, all gels derived from previously prepared stock AA/MBAA released high amount of cells and free biomass was formed. The most efficient immobilization was achieved using gel, containing L. rhamnosus, incubated in 10% AA (acrylamide) and with 1% MBAA (N,N′-methylene-bis-acrylamide) added. This gel possessed optimal permeation characteristics and at the same time, the cells were completely retained in the polymer lattice (0.03 g free biomass/l at 48 h of the batch process). In addition, it yielded highly concentrated lactic acid: the conversion ratio was about 85% without pH-control for initial lactose concentrations of up to 30 g/l. A series of additional immobilization experiments showed the potential of physicochemical interactions between the monomers of acrylamide and the cell surface of L. rhamnosus.     

Modeling of microbial substrate conversion,growth and product formation in a recycling fermentor

Paracoccus denitrificans and Bacillus licheniformis were grown in a carbon- and energy source-limited recycling fermentor with 100% biomass feedback. Experimental data for biomass accumulation and product formation as well as rates of carbon dioxide evolution and oxygen consumption were used in a parameter optimization procedure. This procedure was applied on a model which describes biomass growth as a linear function of the substrate consumption rate and the rate of product formation as a linear function of the biomass growth rate. The fitting procedure yielded two growth domains for P. denitrificans. In the first domain the values for the maximal growth yield and the maintenance coefficient were identical to those found in a series of chemostat experiments. The second domain could be described best with linear biomass increase, which is equal to a constant growth yield. Experimental data of a protease producing B. licheniformis also yielded two growth domains via the fitting procedure. Again, in the first domain, maximal growth yield and maintenance requirements were not significantly different from those derived from a series of chemostat experiments. Domain 2 behaviour was different from that observed with P. denitrificans. Product formation halts and more glucose becomes available for biomass formation, and consequently the specific growth rate increases in the shift from domain 1 to 2. It is concluded that for many industrial production processes, it is important to select organisms on the basis of a low maintenance coefficient and a high basic production of the desired product. It seems less important that the maximal production becomes optimized, which is the basis of most selection procedures.     

Evaluation of extraction methods for recovery of fatty acids from Botryococcus braunii LB 572 and Synechocystis sp. PCC 6803

Microalgae are a very diverse group of organisms that consist in both prokaryotic and eukaryotic forms. Some species of microalgae can be induced to overproduce particular fatty acids through simple manipulations of the physical and chemical properties of the culture medium. In this paper, the effect of different extraction techniques on the recovery of fatty acids from the freeze-dried biomass from two lipid-producing microalgal strains: Botryococcus braunii LB 572 (green algae) and Synechocystis sp. PCC 6803 (cyanobacteria) was examined. Five procedures were used: after conversion of the lipid material into the corresponding fatty acid methyl esters (FAMEs) via suitable derivatization reactions (extraction-transesterification) and direct transesterification of biomass to produce FAMEs (without the initial extraction step) that used differential types of catalysts and processing conditions. This study has shown that procedure 3, a one step practical procedure for lipid extraction and in situ methyl ester derivation could be used successfully for the determination of the fatty acid compositions of microalgae and cyanobacteria.     

Biosorption behavior of heavy metals in bioleaching process of MSWI fly ash by Aspergillus niger

In this study, it was considered that the biosorption of heavy metals by biomass might occur during the bioleaching of fly ash. This work is focused on the biosorption behavior of Al, Fe, Pb and Zn by Aspergillus niger during the bioleaching process. The fungal biomass was contacted with heavy metals solution which extracted from fly ash by using gluconic acid as leaching agent. The equilibrium time for biosorption was about 120 min. The biosorption experiment data at initial pH 6.5 was used to fit the biosorption kinetics and isotherm models. The results indicated that the biosorption of Al, Fe and Zn by A. niger biomass were well described by the pseudo-first order kinetic model. The pseudo-second order kinetic model was more suitable for that of Pb. The Langmuir isotherm model could well describe the biosorption of Fe, Pb and Zn while the Freundlich model could well describe the biosorption of Al. Furthermore, the biosorption of metal ions decreased evidently in the presence of fly ash as compared to that in the absence of fly ash. This research showed that although the biomass sorption occurred during the bioleaching process, it did not inhibit the removal of Al, Fe, Pb and Zn evidently from fly ash.     

Screen-less expanded bed column: new approach for the recovery and purification of a malaria transmission blocking vaccine candidate from Pichia pastoris

An experimental malaria transmission blocking vaccine antigen, Pfs25H, expressed and secreted from Pichia pastoris was recovered and purified using a screenless expanded bed column equipped with a rotating fluid distribution system. This column was able to accommodate feed stock, containing 30% biomass, at a flow rate of 300–400 cm/h without affecting column stability. This capability is three times higher than the capability of the expanded bed column currently in use, which is equipped with a perforated plate fluid distribution system; this design could accommodate biomass concentrations of only up to 10%. The screen-less design did not affect the binding capacity, purification level or process yield and, therefore, shorten the process. Purified Pfs25H of 6.4 g were recovered from 37 l of Pichia pastoris culture in one step.     

Formation of pterinosomes and carotenoid granules in xanthophores of the teleost Oryzias latipes as revealed by the rapid-freezing and freeze-substitution method

Summary The rapid-freezing and freeze-substitution method was applied for the ultrastructural study of the dermal chromatophores of a teleost, Oryzias latipes. The method was found to be suitable for preserving fragile membranous structures within melanophores and xanthophores. In addition, relatively high electron density in overall profile indicates that the procedure is effective in reducing the extraction of cytoplasmic ground substances that inevitably occurs during the process of conventional chemical fixation and the following dehydration. The improved ultrastructural images clearly show that the pterinosomes, the characteristic pigmentary organelles of xanthophores, are formed through several distinct developmental stages starting from the loose congregations of vesicles derived from the Golgi complex. The earlier stages of development are similar to those found in melanosome formation. Whereas carotenoid pigments in xanthophores in conventional aldehyde-osmium-fixed materials are found to be electrondense membrane-free particles, they are identified as membrane-bounded organelles in the present study. The envelope of these carotenoid vesicles does not exhibit a typical trilaminar structure but appears to be an extremely thin membrane. Carotenoid vesicles are, in most cases, in direct contact with the outer surface of tubular endoplasmic reticulum.     

pH effects on the removal of Cu2+, Cd2+ and Pb2+ from aqueous solution by waste brewery biomass

An industrial strain of Saccharomyces cerevisiae collected from the waste of a brewing industry was used to remove lead, cadmium and copper from aqueous solutions (1?mm). Metal removal efficiency by using either biomass suspension directly diluted into the metal solutions or biomass previously incubated and washed in distilled water was compared. In all experiments with unwashed biomass a shift in the medium pH from 4.5 to a final value in the 7.0–8.0 range occurred. This pH increase was responsible for a metal precipitation effect associated to the metal biosorption. A very different pH profile was observed when washed biomass was used leading to different removal profiles for Cd²⁺ and Pb²⁺ and a similar one for Cu²⁺. In the absence of biomass, medium components and/or the excreted intracellular products proved to interfere in the metal removal and to be responsible for 80% Pb²⁺ precipitation, in the pH 4.5–5.0 range. To initial metal solution pH, leading to the lowest residual ion concentrations, after 96?h of contact with unwashed biomass and in the absence of pH adjustment, was 4.5–5.0. Continuous or stepwise adjustment of medium pH to this range during the process was unfavourable for metal removal, being the continuous adjustment the worst procedure. In this case, Cd²⁺ was not biosorbed and Cu²⁺ removal decreased from 76 to 33%. However, Pb²⁺ was always extensively removed (89%) and only slightly affected by pH control. The global results suggest different removal mechanisms for each cation. Cu²⁺ was removed by both metal sorption and precipitation, due to the pH shift that occurred during the process, while Cd²⁺ removal showed to be completely dependent of this pH shift. Pb²⁺ was totally and quickly removed, by precipitation, in the presence of the biomass suspension and at pH 4.5. Moreover, the biosorbent changes occurring during the process played an important role in the metal removal when non-viable microbial biomass is used.     

Combined effects of pH, yeast extract, carbohydrates and di-ammonium hydrogen citrate on the biomass production and acidifying ability of a probiotic Lactobacillus plantarum strain, isolated from table olives, in a batch system

A four variables-five levels Central Composite Design (CCD) was developed to model the individual and interactive effects of carbohydrates (lactose or maltose), yeast extract, di-ammonium hydrogen citrate and pH on the biomass production (Abs_600 nm), viable and cultivable cell number and acidifying ability of a probiotic strain of Lactobacillus plantarum, isolated from table olives “Bella di Cerignola”. pH values were modeled through a negative Gompertz equation, in order to obtain the parameter α (metabolic adaptation time). This value and the biomass were submitted to a stepwise procedure and second order polynomial equations were derived. The parameter α was affected by the initial pH and lactose; the effect of the maltose, however, was not significant. The biomass production increased with increasing of yeast extract, di-ammonium hydrogen citrate and maltose concentrations and was maximum at pH 6.0 and 20 g l⁻¹ of lactose.     

Biological criteria for the exploitation of the commercially important species of Gelidium in Spain

Exploitation of the commercially-important species of Gelidium in Spain (G. sesquipedale and G. latifolium) and development of the industry occurred after World War II, as a consequence of their use as resources for the extraction of agar. This resulted in the implementation of several harvesting methods, the most important of which is the gathering of cast seaweeds, both from the shore and the sea. From the very beginning, direct exploitation of these species (i.e. plucking) was controversial because of possible adverse ecological effects. Consequently, several biological and ecological studies of both species of Gelidium were begun. This included such aspects as growth, biomass production, productivity, reproduction, regeneration capacity and agar yield. Recently, the growing interest in using and conserving this resource has led to increased knowledge of the biology and ecology of these species. In this paper, we provide an overview of the research carried out by different Spanish groups and suggest guidelines for rational management of these resources.     

<Emphasis Type="Italic">Agrobacterium-</Emphasis>mediated transformation of gypsophila (<Emphasis Type="Italic">Gypsophila paniculata</Emphasis> L.)

As a major contributor to the flower market, Gypsophila paniculata is an important target for the breeding of new varieties. However, gypsophila breeding is strongly hampered by the sterility of this species’ genotypes and the lack of a genetic-transformation procedure for this genus. Here we describe the establishment of a transformation procedure for gypsophila (Gypsophila paniculata L.) based on Agrobacterium inoculation of highly regenerative stem segments. The transformation procedure employs stem explants derived from GA₃-pretreated mother plants and a two-step selection scheme. The GA₃ treatment was crucial for obtaining high gene-transfer frequencies (75–90% GUS-expressing explants out of total inoculated explants), as shown using three different gypsophila varieties. An overall transformation efficiency of five GUS-expressing shoots per 100 stem explants was demonstrated for cv. Arbel. The applicability of the transformation system to gypsophila was further reinforced by the generation of transgenic plants expressing Agrobacterium rhizogenes rolC driven by a CaMV 35S promoter. Transgenic gypsophila plantlets exhibited extensive rooting and branching, traits that could be beneficial to the ornamental industry.     

Edaphic limitations to growth and photosynthesis in Sierran and Great Basin vegetation

Summary Soils derived from hydrothermally altered andesite support unique communities of Sierran conifers (Pinus ponderosa Laws. and P. jeffreyi Grev. and Balf.) amongst sagebrush (Artemisia tridentata Nutt.) vegetation in the western Great Basin. Plants grown in soil derived from hydrothermally altered bedrock had lower growth rates, total biomass, and net photosynthetic rates than plants grown in soil derived from unaltered andesite of the same formation. Total dry mass was 10 to 28% lower for conifers grown in altered soil whereas dry mass of Artemisia tridentata and Bromus tectorum L. was reduced by over 90%. Results from a nutrient amendment experiment indicated that low phosphorus was the dominant limitation in altered soil, and phosphorus-deficiency affected growth primarily by limiting leaf area development rather than direct inhibition of photosynthesis. The proportionately greater reduction of biomass for Artemisia and Bromus grown in altered soil supports our hypothesis that Great Basin vegetation is excluded from altered soil by intolerance to nutrient deficiency. The Sierran conifers growing on this rock type are therefore free of competition for water with Great Basin vegetation and are able to persist in an exceptionally dry climate.     

Edible macroalga <Emphasis Type="Italic">Ulva prolifera</Emphasis> as microelemental feed supplement for livestock: the fundamental assumptions of the production method

In the present paper, the possibility of the application of marine macroalga Ulva (Enteromorpha) prolifera, as microelemental feed supplement for livestock, was evaluated. The concept was based on two facts: the natural macroalga contains high concentrations of microelements and there is a possibility to greatly increase this content via biosorption. In order to characterize the biosorption process of metal ions by U. prolifera, preliminary experiments were conducted with Cr(III) ions. The effect of temperature, pH and the biomass concentration on the equilibrium of biosorption was investigated. For further experiments (biosorption of Mn(II), Zn(II), Cu(II), Co(II)), the following experimental conditions were chosen: pH 5, 25°C, the biomass concentration 1.0 g l⁻¹. Equilibrium of the biosorption process could be described by the Langmuir equation. The theoretical maximum biosorption capacity was also determined by potentiometric titration of the biomass. The investigation of the external structure of the macroalga and atomic concentration of elements on the surface of the biomass was analyzed using scanning electron microscopy. The content of microelements in the biomass after biosorption increased 110,555; 44,228; 21,177; 2,281 and 1,458 times for Co(II), Cr(III),Cu(II), Zn(II), Mn(II), respectively. Therefore, biomass of U. prolifera enriched with individual microelements, mixed in the proper proportion could be used as feed supplement in animal feeding to cover the nutrient requirements for microelements.     

Production of <Emphasis Type="Italic">Chryseobacterium proteolyticum</Emphasis> protein-glutaminase using the twin-arginine translocation pathway in <Emphasis Type="Italic">Corynebacterium glutamicum</Emphasis>

The protein glutaminase (PG) secreted by the Gram-negative bacterium Chryseobacterium proteolyticum can deamidate glutaminyl residues in several substrate proteins, including insoluble wheat glutens. This enzyme therefore has potential application in the food industry. We assessed the possibility to produce PG containing a pro-domain in Corynebacterium glutamicum which we have successfully used for production of several kinds of proteins at industrial-scale. When it was targeted to the general protein secretion pathway (Sec) via its own signal sequence, the protein glutaminase was not secreted in this strain. In contrast, we showed that pro-PG could be efficiently produced using the recently discovered twin-arginine translocation (Tat) pathway when the typical Sec-dependent signal peptide was replaced by a Tat-dependent signal sequence from various bacteria. The accumulation of pro-PG in C. glutamicum ATCC13869 reached 183 mg/l, and the pro-PG was converted to an active form as the native one by SAM-P45, a subtilisin-like serine protease derived from Streptomyces albogriseolus. The successful secretion of PG via this approach confirms that the Tat pathway of C. glutamicum is an efficient alternative for the industrial-scale production of proteins that are not efficiently secreted by other systems.     

Effects of simulated herbivory in three old field Compositae with different inflorescence architectures

The effects of simulated herbivory (early or late defoliation and cutting of the flowering shoot) on the growth and reproduction of three species of monocarpic composite forbs (Crepis pulchra, Picris hieracioides and C. foetida) with different inflorescence architectures were studied in experimental plots. For the three species studied, early defoliation had no significant effect on subsequent growth. In contrast, late defoliation, occurring at the start of the season of drought, had a negative effect on growth and reproduction in the two Crepis species, particularly C. foetida, but had less effect on P. hieracioides. Sexual biomass was more clearly affected by late defoliation than was vegetative biomass, although the effects differed markedly among species possibly as a result of differences in phenology. Clipping the flowering shoot removed about 3 times less biomass than late defoliation and had little effect on vegetative biomass. It had much greater effects on the sexual biomass in P. hieracioides and C. pulchra, and resulted in the production of many shoots sprouting from the rosette, allowing the treated plants to regain a vegetative biomass close to that of control plants. Clipping did however lead to the production of shorter shoots and a reduction in the number of capitula formed. In C. foetida, much branching occurred even when the main shoot was not cut; the architecture of individual plants was therefore only slightly changed by clipping the apical bud and the sexual biomass of this species was not affected by ablation of the flowering shoot. Overcompensation was found in only two families of C. pulchra for vegetative biomass. No over-compensation was found for sexual biomass, despite an increase in the number of flowering shoots in C. pulchra and P. hieracioides following clipping. However situations close to compensation for the vegetative biomass in the three species and in P. hieracioides for the sexual biomass were recorded. The response of the three study species to simulated herbivory were related to their architecture and to the time of defoliation.     

The effects of the novel bifidogenic trisaccharide,neokestose, on the human colonic microbiota

The potential prebiotic effect of the fructo-trisaccharide, neokestose, on intestinal bacteria was investigated. Bifidobacterium sp. utilized neokestose to a greater extend and produced more biomass from neokestose than facultative anaerobes under anaerobic conditions in batch culture. Lactobacillus salivarius utilized glucose but negligible amounts of neokestose. L. salivarius and the facultative anaerobes produced significantly more biomass from glucose than from neokestose, whereas the biomass yields obtained with bifidobacteria on neokestose and glucose, respectively, were not significantly different. Static batch cultures inoculated with faeces supported the prebiotic effect of neokestose, which had been observed in the pure culture investigations. Bifidobacteria and lactobacilli were increased while potentially detrimental coliforms, clostridia and bacteroides, decreased after 24 h fermentation with neokestose. In addition, this effect was more pronounced with neokestose than with a commercial prebiotic fructo-oligosaccharide. It was concluded that neokestose has potential as a novel bifidogenic substance and that it might have advantages over the commercially available sources currently used.     

Redefinition and phylogenetic relationships of the family Pinguipedidae (Teleostei: Perciformes)

The phylogenetic relationships of the family Pinguipedidae plus the genus Cheimarrichthys von Haast, 1874, were studied to redefine the family. Based on a phylogenetic analysis using derived characters belonging to 21 transformation series, accepting the monophyly of Pinguipedidae plus Cheimarrichthys provisionally for the operational procedure of the analysis, it was hypothesized that Cheimarrichthys is not closely related to Parapercis Bleeker, 1863, although these genera had been considered as having a close affinity. Although the Pinguipedidae and Cheimarrichthys share nine derived characters, it was determined that these characters are also found in other trachinoid families. In addition, several families, such as the Leptoscopidae, Uranoscopidae, and Trichodontidae, have many more derived characters in common with Cheimarrichthys than the pinguipedids have with that genus. The conclusion drawn here is that it is not parsimonious to recognize the monophyly of the Pinguipedidae and Cheimarrichthys based on these nine derived characters, and that these characters are not compelling enough to link these groups. The redefined Pinguipedidae is proposed to include the following five genera: Parapercis, Prolatilus Gill, 1865, Pinguipes Cuvier, 1829, Pseudopercis de Miranda-Ribeiro, 1903, and Kochichthys Kamohara, 1960. Cheimarrichthys, excluded from the Pinguipedidae, is put into its own family, Cheimarrichthyidae.     

The efficiency of nitrogen retranslocation from leaf biomass in Quercus ilex ecosystems

Nitrogen retranslocation from senescing leaves represents a crucial adaptation by tree species towards a more efficient use of this nutrient. As a result, this part of the nitrogen cycle has received increasing attention in recent years. However, there remain strong discrepancies with respect to the factors responsible for interspecific differences in the efficiency of this process.In the present work the seasonal pattern of leaf growth and the movement of nitrogen in leaves have been studied in a series of Quercus ilex plots with different levels of rainfall and soil quality in central-western Spain, as well as in 20 other woody species typical of this area. The percentage of nitrogen retranslocated was estimated from the difference between the maximum mass of nitrogen stored in the leaf biomass and the amount of this nutrient returned annually to the soil through leaf fall. Q. ilex appears as one of the least efficient species in the Mediterranean region in the recovery of nitrogen from senescing leaves (29.7% of the maximum pool). Furthermore, the older leaves of Q. ilex do not show the cycles of nitrogen withdrawal during new flushes of shoot growth, such as occurs in Pinus spp. This suggests that older leaves in Q. ilex do not play an important role as nitrogen storage organs.     

Root biomass and rooting profile of naturally regenerated beech in mid-elevation Scots pine woodlands

The natural establishment of shade-tolerant forest species such as beech (Fagus sylvatica L.) occurs in naturally regenerated Scots pine (Pinus sylvestris L.) woodlands that develop on former pastures and cultivated lands. To examine possible effects of underground competition in beech establishment, we studied the root biomass and the rooting profile of 53 mixed Scots pine-natural beech woodlands in French mid-elevation volcanic areas. Stands were arranged along a maturation gradient. Roots were sampled using the root-auger technique (0 to 75 cm depth every 15 cm). In addition, 23 young beeches were uprooted to study the entire root system. Total beech fine-root biomass was closely correlated with most beech aerial characteristics, (e.g., height, diameter and girth), and correlated moderately with tree age. However, it correlated poorly with basic competition indices such as stand density and basal area. Conversely, competition indices including vertical dimensions of competing trees were correlated with the underground biomass, probably as a result of redundancy with beech height. The rooting profile (fine roots, < 5 mm) of beech and pine were quite similar, and did not change significantly along the stand maturation gradient. Beech has a heart-shaped root system while pine is more plate-like and dimorphic. Beech fine-root biomass progressively surpassed pine biomass throughout the soil layers, thus confirming that it is dynamic and competitive in mature mixed stands. The coexistence of the root systems of beech and pine in the same soil layers presumably results in strong underground competition.