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1.
《Ostrich》2013,84(3):257-270
This study evaluates phylogeographic structure in selected forest bird species distributed on either side of the Dahomey Gap in West Africa to extend analyses of avian diversification across the Guineo-Congolean forest. Mitochondrial DNA sequence data were collected for five species, including four with a break in distribution across the Dahomey Gap and one with a more continuous distribution. Data for the five focal species were included in a single analysis along with appropriate outgroup taxa, allowing estimates of divergence time on a common timescale. Both phylogeographic patterns and estimated divergence times were highly variable. In two cases (Green Hylia Hylia prasina and Yellow-whiskered Greenbul Eurillas latirostris), samples from east and west of the Dahomey Gap belong to divergent mitochondrial lineages, but with substantially older divergence in Eurillas (~4.1 MY). In Western Bluebill Spermophaga haematina, relatively divergent eastern and western lineages (~1.1 MY) were sampled in the same locality in eastern Ghana, suggesting east to west gene flow across the gap following earlier vicariance. In Forest Robin Stiphrornis erythrothorax, birds sampled within Ghana were from two highly divergent lineages (~1.9 MY), one of which is more closely related to birds from Cameroon and Equatorial Guinea, such that divergence across the Dahomey Gap was comparatively recent (~0.36 MY). For both Hylia and Stiphrornis, we corroborate recent studies documenting multiple divergent lineages within each genus, some of which may represent distinct species. Consistent with previous studies, our analysis shows that the Dahomey Gap can be a significant barrier to gene flow for species restricted to forest habitats. At the same time, individual species exhibit a broad range of divergence times and phylogeographic histories of variable complexity. We discuss the taxonomic implications of our results for each focal species. 相似文献
2.
Microsatellite variation from eight loci was studied in five populations of Drosophila teissieri, a fruit-fly found only in the rain forests of sub-Saharan Africa. Five noncontiguous rain forest sites (from Tanzania, Gabon and Ivory Coast) were sampled to measure the effects of historical forest fragmentation on population structure in an obligatory forest-dwelling species. The Ivory Coast and Gabon populations showed a wider range of alleles, different modal alleles and had a higher genetic diversity than the three East African populations. As could be expected, genetic differentiation (FST) was significantly correlated with physical distance, but the westernmost population (Ivory Coast) showed values that were intermediate between the central (Gabon) and Eastern (Tanzania) populations. A migration-drift equilibrium in a stable continuum of populations did not appear adequate to describe the observed distribution. It seems probable that the species has undergone abrupt changes involving isolation, merging and migration of populations, as a consequence of repeated waves of forest fragmentation and coalescence. 相似文献
3.
Comstock KE Georgiadis N Pecon-Slattery J Roca AL Ostrander EA O'Brien SJ Wasser SK 《Molecular ecology》2002,11(12):2489-2498
The highly threatened African elephants have recently been subdivided into two species, Loxodonta africana (savannah or bush elephant) and L. cyclotis (forest elephant) based on morphological and molecular studies. A molecular genetic assessment of 16 microsatellite loci across 20 populations (189 individuals) affirms species level genetic differentiation and provides robust genotypic assessment of species affiliation. Savannah elephant populations show modest levels of phylogeographic subdivision based on composite microsatellite genotype, an indication of recent population isolation and restricted gene flow between locales. The savannah elephants show significantly lower genetic diversity than forest elephants, probably reflecting a founder effect in the recent history of the savannah species. 相似文献
4.
We used mitochondrial DNA control-region and microsatellite data to infer the evolutionary history and past demographic changes in 332 rock partridges (Alectoris graeca) sampled from throughout the species' distribution range, with the exception of the central Balkans region. Maternal and biparental DNA markers indicated concordantly that rock partridge populations are structured geographically (mtDNA phiST = 0.86, microsatellite FST = 0.35; RST = 0.31; P < 0.001). Phylogenetic analyses of 22 mtDNA haplotypes identified two major phylogroups (supported by bootstrap values = 93%), splitting partridges from Sicily vs. all the other sampled populations at an average Tamura-Nei genetic distance of 0.035, which corresponds to 65% of the average distance between closely related species of Alectoris. Coalescent estimates of divergence times suggested that rock partridges in Sicily were isolated for more than 200000 years. This deep subdivision was confirmed by multivariate, Bayesian clustering and population assignment analyses of microsatellite genotypes, which supported also a subdivision of partridges from the Alps vs. populations in the Apennines, Albania and Greece. Partridges in the Apennines and Albania-Greece were probably connected by gene flow since recently through a late Pleistocene Adriatic landbridge. Deglaciated Alps were probably colonized by distinct and, perhaps, not yet sampled source populations. Bottleneck and mismatch analyses indicate that rock partridges have lost variability through past population declines, and did not expand recently. Deglaciated areas could have been recolonized without any strong demographic expansion. Genetic data partially supported subspecies subdivisions, and allowed delimiting distinct conservation units. Rock partridges in Sicily, formally recognized as A. g. whitakeri, met the criteria for a distinct evolutionary significant unit. 相似文献
5.
L. B. BEHEREGARAY L. M. M
LLER T. S. SCHWARTZ N. L. CHAO A. CACCONE 《Molecular ecology resources》2004,4(3):330-332
The cardinal tetra Paracheirodon axelrodi is a very popular aquarium fish and the most important ornamental fishery resource for riverine communities inhabiting the Rio Negro floodplain in central Amazonia. Here we describe the isolation and characterization of 14 microsatellite DNA loci for cardinal tetras. Number of alleles and heterozygosity per locus in a sample of 30 fish ranged from 2 to 22 and from 0.49 to 0.92, respectively. These markers provide powerful tools for studies on conservation and management of cardinal tetra resources and for investigating evolutionary processes underlying population diversification in Amazonian flooded forest fishes. 相似文献
6.
L. B. BEHEREGARAY T. S. SCHWARTZ L. M. M
LLER D. CALL N. L. CHAO A. CACCONE 《Molecular ecology resources》2004,4(3):333-335
The one‐lined pencilfish Nannostomus unifasciatus is a small fish from the flooded forests of the Amazon basin. Pencilfish are popular in aquaria and are used as ornamental fishery resource by riverine communities from central Amazonia. Here we report a set of nine microsatellite loci for N. unifasciatus. Number of alleles and heterozygosity per locus in a sample of 30 pencilfish ranged from 4 to 19 and from 0.39 to 0.86, respectively. These markers will prove useful to investigate population genetic structure, identify conservation units, and to conduct phylogeographical reconstructions in pencilfish from the flooded forests of Amazonia. 相似文献
7.
The retreating edge hypothesis for species responding to climate change predicts severe bottlenecks and eventual extinction. The disjunct Lost Pines population at the westernmost edge of the widespread Pinus taeda range is well suited for testing this prediction. The occurrence of one or more genetic bottlenecks in the Lost Pines population was tested using 34 nuclear microsatellite markers and a control sample from the larger, more continuous east Texas P. taeda forests. The Lost Pines population has undergone drastic contractions in effective population size between 3000 and 30 000 years bp. These results were supported by: (i) detection of transient heterozygosity excess, (ii) a mode-shift indicator of allele frequencies, and (iii) a ratio of allele number to allele size range. No bottleneck was detected for the east Texas control using any of the three methods. The distribution of allele frequencies was skewed for the Lost Pines population compared to the control, indicating a loss of rare alleles. However, allelic diversity was similar between the Lost Pines population and its east Texas control; the mean allele number per locus was 5.29 and 5.38, respectively. It is proposed that the Lost Pines population was the western refugium for P. taeda during Pleistocene glaciation and that East Texas P. taeda forests descended from the bottlenecked Lost Pines population. 相似文献
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Gohta Kinoshita;Takuma Sato;Shota Murakami;Vladimir Monakhov;Alexey P. Kryukov;Lyubov V. Frisman;Yoshihiro Tsunamoto;Yoshihisa Suyama;Takahiro Murakami;Hitoshi Suzuki;Jun J. Sato; 《Journal of Biogeography》2024,51(5):924-939
The continental island system comprising Sakhalin, Hokkaido and the southern Kuril Islands (SHSK) in northeastern Asia serves as one of the southernmost habitats for many boreal and arctic organisms, with colonization via land bridges formed during glacial periods. To understand the impacts of past land-bridge formation under Quaternary climate changes across SHSK, we investigated the demographic history of forest-dwelling marten species. 相似文献
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Abril Rodríguez-Banderas Carlos F. Vargas-Mendoza Anna Buonamici Giovanni G. Vendramin 《Journal of Biogeography》2009,36(9):1807-1820
Aim Mexico is a centre of diversity for species of the genus Pinus, most of which have restricted geographical distributions. An exception is Pinus leiophylla Schiede and Deppe, which is widely distributed throughout most of Mexico’s mountainous regions. We attempt to reconstruct the phylogeographic history of this species, in order to determine if its current broad distribution is associated with major events of environmental change that occurred during the Quaternary. Location Coniferous forests in Sierra Madre Occidental, Eje Volcánico Transversal and Sierra Montañosa del Norte de Oaxaca, Mexico. Methods A total of 323 individuals of both P. leiophylla var. leiophylla and P. leiophylla var. chihuahuana sampled from 22 populations were screened for variation at six paternally inherited chloroplast DNA microsatellite markers (cpSSR). In addition to haplotypic diversity estimates and neutrality tests, the following clustering methods were employed: principal components analysis (PCA), analysis of molecular variance (AMOVA), spatial analysis of molecular variance (SAMOVA), haplotype network and a technique similar to Croizat’s panbiogeographical method of individual and generalized tracks. Results The combination of mutations at the six microsatellites yielded a total of 92 different haplotypes. The percentage of shared haplotypes between varieties (P. leiophylla var. leiophylla and P. leiophylla var. chihuahuana) was only 2.2%. The average haplotypic diversity for the species was H = 0.760. PCA and SAMOVA indicate the presence of four main genetic clusters. The estimated divergence time between the two most frequent haplotypes was between 75,000 and 110,000 years. Significantly large negative Fs values suggest that most of the sampled populations are currently expanding. Individual and generalized tracks identified three potential zones that may have harboured ancestral populations of P. leiophylla and from which the expansion of this species started, as well as two secondary contact zones between the two varieties. Main conclusions The results indicate that one of the three potential areas hypothesized to have harboured ancestral populations of P. leiophylla may be related to the origin of P. leiophylla var. chihuahuana, while the other two may be related to the origin of P. leiophylla var. leiophylla. The current broad distribution of P. leiophylla is probably associated with its strong colonization ability. 相似文献
13.
Aim The aims of this paper are to reconstruct the vegetation and fire history over the past 2000 years in a well‐preserved rain‐forest area, to understand interactions between climate, fire, and vegetation, and to predict how rain forest responds to global warming and increased intensity of human activity. Location Xishuangbanna, south‐west China, 21–22° N, 101–102° E. Methods Phytolith (plant opal silica bodies) morphotypes, assemblages, and indices were used to reconstruct palaeovegetation and palaeoclimate changes in detail. Micro‐charcoal particles found in phytolith slides, together with burnt phytoliths and highly weathered bulliform cells, were employed to reconstruct a record of past fire occurrence. A survey of field sediments, lithology, and 14C dating were also employed. Results Phytoliths were divided into 11 groups and classified into 33 well‐described morphotypes according to their shape under light microscopy and their presumed anatomical origins and ecological significance. The phytolith assemblages were divided into six significant zones that reveal a complete history of vegetation changes corresponding to climate variation and fire occurrence. Phytolith assemblages and indices show that the palaeoclimate in the study area is characterized by the alternation of warm–wet and cool–dry conditions. Phytolith and charcoal records reveal that 12 fire episodes occurred. Comparison of burnt phytoliths with an aridity index (Iph) shows that fire episodes have a strong relationship with drought events. Main conclusions Our results indicate that fire occurrence in the tropical rain forest of Xishuangbanna is predominantly under the control of natural climate variability (drought events). Nearly every fire episode is coupled with a climatic event and has triggered vegetation composition changes marked by a pronounced expansion of grasses. This indicates that drought interacts with fire to exert a strong influence on the ecological dynamics of the rain forest. However, the impact of human activity in recent centuries is also significant. Our results are important for understanding the interactions between climate, fire, and vegetation, and for predicting how rain forest responds to global warming and increased human activity. 相似文献
14.
In Europe, the Quaternary is characterized by climatic fluctuations known to have led tomany cycles of contraction and expansion of species geographical ranges. In addition,during the Holocene, historical changes in human occupation such as colonization orabandonment of traditional land uses can also affect habitats. These climatically oranthropically induced geographic range changes are expected to produce considerableeffective population size change, measurable in terms of genetic diversity andorganization. The rock ptarmigan (Lagopus muta) is a small-bodied grouseoccurring throughout Northern hemispheric arctic and alpine tundra. This species is notconsidered threatened at a continental scale, but the populations in the Pyrenees are ofconcern because of their small population size, geographical isolation and low geneticdiversity. Here, we used 11 microsatellites to investigate genetic variations anddifferentiations and infer the overall demographic history of Pyrenean rock ptarmiganpopulations. The low genetic variability found in these populations has been previouslythought to be the result of a bottleneck that occurred following the last glacial maximum(i.e., 10 000 years ago) or more recently (i.e., during the last 200 years). Ourresults clearly indicate a major bottleneck affecting the populations in the last tenth ofthe Holocene. We discuss how this decline can be explained by a combination of unfavorableand successive events that increased the degree of habitat fragmentation. 相似文献
15.
Aim There are currently few population genetic studies on widely distributed SE Asian terrestrial organisms. We have studied the genetic diversification pattern of the giant wood spider, Nephila pilipes (Araneae: Tetragnathidae) to see whether fluctuations in rain forest extents generated by Quaternary climatic changes left signatures on populations of this agile terrestrial arthropod. Location The collecting localities were distributed in the following seven regions: (1) N Australia; (2) India (Calcutta, Karziranga and Sukna); (3) SE Asia (N Vietnam, Malaysia, Singapore and Bali); (4) SE China (Fujian, Guandong, Hong Kong and Hainan); (5) SW China (Guangxi and Yunnan); (6) E Asian islands (Ryukyu islands and Taiwan); and (7) the Philippine Islands. Methods A total of 374 specimens were collected from the East Asian continent and islands, SE Asia, India, and northern Australia. Mitochondrial cytochrome oxidase I gene partial sequences were used as the molecular marker to infer the phylogeographic diversification patterns. Results From the specimens collected, 67 haplotypes were identified, which could be grouped into five major clades. The dominant clade contained populations in regions ranging from Okinawa to Bali (spanning a distance of more than 4000 km), but their genetic variations were not structured and were not significantly associated with geographical distances. Three clades contained specimens collected from peripheral regions of the distribution range of N. pilipes, such as India, N Australia, and NE Asia. Members of the clade distributed in NE Asia were sympatric but those of the clades distributed in Australia and India were allopatric with those of the dominant clade. Main conclusions The results of this study indicate that, during Quaternary glacial periods, the rain forests in SE Asia might have been more or less continuous and thus generated an unstructured genetic diversification pattern of N. pilipes inhabiting this region. However, during such periods, populations in peripheral regions such as India, N Australia and NE Asia might have been isolated in refugia, thus accounting for the observed genetic divergence from populations in the SE Asian region. 相似文献
16.
Aim We aim to propose validated, spatially explicit hypotheses for the late Quaternary distribution of the Brazilian Atlantic forest, and thereby provide a framework for integrating analyses of species and genetic diversity in the region. Location The Atlantic forest, stretching along the Brazilian coast. Methods We model the spatial range of the forest under three climatic scenarios (current climate, 6000 and 21,000 years ago) with BIOCLIM and MAXENT. Historically stable areas or refugia are identified as the set of grid cells for which forest presence is inferred in all models and time projections. To validate inferred refugia, we test whether our models are matched by the current distribution of the forest and by fossil pollen data. We then investigate whether the location of inferred forest refugia is consistent with current patterns of species endemism and existing phylogeographical data. Results Forest models agree with pollen records and predict a large area of historical forest stability in the central corridor (Bahia), as well as a smaller refuge (Pernambuco) along the Brazilian coast, matching current centres of endemism in multiple taxa and mtDNA diversity patterns in a subset of the species examined. Less historical stability is predicted in coastal areas south of the Doce river, which agrees with most phylogeographical studies in that region. Yet some widely distributed taxa show high endemism in the southern Atlantic forest. This may be due to limitations of the modelling approach, differences in ecology and dispersal capability, historical processes not contemplated by the current study or inadequacy of the available test data sets. Main conclusions Palaeoclimatic models predict the presence of historical forest refugia in the Atlantic rain forest and suggest spatial variation in persistence of forests through the Pleistocene, predicting patterns of biodiversity in several local taxa. The results point to the need for further studies to document genetic and species endemism in the relatively poorly known and highly impacted areas of Atlantic rain forests of north‐eastern Brazil. 相似文献
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Jean Maley with the collaboration of Alex Chepstow-Lusty 《Vegetation History and Archaeobotany》2001,10(2):117-120
The oil palm (Elaeis guineensis) is naturally abundant in all the African rain forests. Because this tree is a heliophytic, pioneering species, it can rapidly
colonize the periphery of the rain forest and gaps created inside, regardless of the cause. In the majority of traditional
African societies, people exploit natural oil palm groves; no attempt is made to propagate the palm by sowing or transplanting
seedlings. The late Holecene phase of dramatic forest decline, around 2500 uncal. B.P., was particularly favourable to oil
palm expansion. The scale and timing of this palaeoenvironmental variation, and the subsequent response of this pioneer tree,
cannot be interpreted as indicating human activities, let alone an indication of cultivation.
Received December 4, 2000 / Accepted March 8, 2001 相似文献
19.
Hermann Behling 《Vegetation History and Archaeobotany》1996,5(3):241-246
Palynological studies on late Quaternary lake sediments from the region of the Amazon estuary, 100 km north-east of Belém, Pará State, Brazil, enable reconstruction of lowland Amazonian rain forest during the Late-glacial and Holocene periods. Late-glacial forests included populations of Podocarpus which suggests a distinct climatic cooling. Ilex was abundant in the early Holocene. Records of the mangrove taxon, Rhizophora, indicate rapid Atlantic sea-level rise in the beginning of the Holocene. High charcoal representation may reflect the first arrival of Amerindians in the Amazon coastal area, probably about 10 800 B.P. 相似文献
20.
Mayle FE Power MJ 《Philosophical transactions of the Royal Society of London. Series B, Biological sciences》2008,363(1498):1829-1838
This paper uses a palaeoecological approach to examine the impact of drier climatic conditions of the Early-Mid-Holocene (ca 8000-4000 years ago) upon Amazonia's forests and their fire regimes. Palaeovegetation (pollen data) and palaeofire (charcoal) records are synthesized from 20 sites within the present tropical forest biome, and the underlying causes of any emergent patterns or changes are explored by reference to independent palaeoclimate data and present-day patterns of precipitation, forest cover and fire activity across Amazonia. During the Early-Mid-Holocene, Andean cloud forest taxa were replaced by lowland tree taxa as the cloud base rose while lowland ecotonal areas, which are presently covered by evergreen rainforest, were instead dominated by savannahs and/or semi-deciduous dry forests. Elsewhere in the Amazon Basin there is considerable spatial and temporal variation in patterns of vegetation disturbance and fire, which probably reflects the complex heterogeneous patterns in precipitation and seasonality across the basin, and the interactions between climate change, drought- and fire susceptibility of the forests, and Palaeo-Indian land use. Our analysis shows that the forest biome in most parts of Amazonia appears to have been remarkably resilient to climatic conditions significantly drier than those of today, despite widespread evidence of forest burning. Only in ecotonal areas is there evidence of biome replacement in the Holocene. From this palaeoecological perspective, we argue against the Amazon forest 'dieback' scenario simulated for the future. 相似文献