Molecular Mechanisms of Radiation Induced Dna Damage: H-Addition to Bases,Direct Ionization and Double Strand Break

Structures and properties of C.(-H) and of TH. were obtained from quantum mechanical calculations. New AMBER parameters for these radicals were obtained to fit their structures and charge distributions. Molecular mechanics simulations of the conformational changes induced in a 12-mer of DNA, d(CGCGAATTCGCG), by these radicals show that the distances between the base and the C₂' of the sugar becomes shorter. Such changes suggest that the base radical can abstract the H,' and transfer the radical from the base to the sugar. Once the radical becomes centered on the sugar a strand break can follow. A simultaneous formation of guanine and thymine radicals on opposite strands may lead to a double strand break.     

Molecular Mechanisms of Radiation Induced Dna Damage: H-Addition to Bases, Direct Ionization and Double Strand Break

Structures and properties of C.(-H) and of TH. were obtained from quantum mechanical calculations. New AMBER parameters for these radicals were obtained to fit their structures and charge distributions. Molecular mechanics simulations of the conformational changes induced in a 12-mer of DNA, d(CGCGAATTCGCG), by these radicals show that the distances between the base and the C₂' of the sugar becomes shorter. Such changes suggest that the base radical can abstract the H,' and transfer the radical from the base to the sugar. Once the radical becomes centered on the sugar a strand break can follow. A simultaneous formation of guanine and thymine radicals on opposite strands may lead to a double strand break.     

6-Amino-8-hydroxy-7,8-dihydro-purine: Radiation Product of Adenine

THERE have been several investigations of the radiation chemistry of DNA and its constituents^1–5 and in this communication I describe the identification of a new major radiation product of adenine.     

Effects of Adenine Derivatives and Auxin-related Compounds on Mitochondrial Membrane Permeability

Adenine derivatives and auxin-related compounds, 2,4-dichlorophenoxyaceticacid (2,4-D) and 2,3,5-triiodobenzoic acid (TIBA), did not inhibitthe transport systems for succinate or malate into mitochondria.In iso-osmotic KC1 medium, some of these compounds increasedion fluxes moderately. TIBA and 2,4-D inhibited the mitochondrialshrinkage induced by the substrates. In contrast, adenine derivativesinhibited only the shrinkage induced by the substrate whoseoxidation they were able to block specifically. (Received February 18, 1987; Accepted June 29, 1987)     

Phosphonylmethyl Analogs of Nucleotides and Their Derivatives: Chemistry and Biology

Abstract

Ribonucleoside O-phosphonylmethyl derivatives are novel isopolar analogs of nucleotides. This review summarizes data on their synthesis and properties, as well as data on novel type of open-chain nucleotide analogs.     

Shape and Volume Changes in Frog Erythrocytes Following Ultraviolet Radiation

Frog erythrocytes in Ringer's solution were exposed to ultraviolet radiation and then followed in camera lucida drawings for changes in shape and dimension. Cell thickness was found to increase while cell width remained constant throughout the period prior to hemolysis. The cell shortened and bulged at the ends during the middle third of the prolytic period while a region around the cell center remained constricted. When this constricted region gave way, the cell became spherical and hemolyzed. Cell volume as calculated from the cell's dimensions increased linearly with time throughout the prolytic period to hemolysis then dropped rapidly to a constant value somewhat higher than the original cell volume. These changes in shape and volume are consistent with a colloid osmotic type of hemolysis but with other factors acting to limit the rate of swelling and the forms assumed during the swelling process. The relationship between the time of hemolysis and the cell surface area exposed to the ultraviolet is discussed as it applies to the site of ultraviolet damage.     

An Antisense Pectin Methylesterase Gene Alters Pectin Chemistry and Soluble Solids in Tomato Fruit

Pectin methylesterase (PME, EC 3.1.11) demethoxylates pectins and is believed to be involved in degradation of pectic cell wall components by polygalacturonase in ripening tomato fruit. We have introduced antisense and sense chimeric PME genes into tomato to elucidate the role of PME in fruit development and ripening. Fruits from transgenic plants expressing high levels of antisense PME RNA showed <10% of wild-type PME enzyme activity and undetectable levels of PME protein and mRNA. Lower PME enzyme activity in fruits from transgenic plants was associated with an increased molecular weight and methylesterification of pectins and decreased levels of total and chelator soluble polyuronides in cell walls. The fruits of transgenic plants also contained higher levels of soluble solids than wild-type fruits. This trait was maintained in subsequent generations and segregated in normal Mendelian fashion with the antisense PME gene. These results indicate that reduction in PME enzyme activity in ripening tomato fruits had a marked influence on fruit pectin metabolism and increased the soluble solids content of fruits, but did not interfere with the ripening process.     

Studies on Radiation Chemistry of Halogenophenols in Aqueous Solution

In relation to the bactericidal action of γ-irradiated halogenophenol solution, radiolysis of p-bromophenol in the aqueous system under anaerobic condition was investigated. Several phenolic compounds could be isolated from the radiolysis products, and three of them were elucidated for their structures. One of them was hydroquinone and the other two were assigned as new asymmetrical dimers, 5-bromo-2,4′-dihydroxybiphenyl and 2-bromo-5,4′-dihydroxybiphenyl, which were confirmed by the syntheses of their methyl ethers.     

Studies on Radiation Chemistry of Halogenophenols in Aqueous Solutions

Among the γ-radiolysis products of p-bromophenol in an aqueous solution, four new oligomers were obtained. By chemical and physical techniques their structures were elucidated as ortho-, meta- and para-terphenyl in which C-4, C-2′ and C-4″ are substituted by hydroxyl groups and C-5′ by a bromine atom and as 5-bromo-2,4′,4″-trihydroxy-m-terphenyl, respectively. These oligomers may be formed by the arylation of p-bromophenol or the dimeric product with an aryl radical intermediate resulted from debromination of p-bromophenol by some radiolysis product(s) of water.     

Direct measurement of superoxide anion produced in biological systems by ESR spectrometry: a pH-jump method

For direct measurement of the ESR signal of superoxide anion (O2-) produced in biological samples, O2- generated at a physiological pH was trapped in alkaline media instead of by a rapid freezing method, and then its signal was measured by ESR spectroscopy at 77 K. A reaction mixture for O2- generation, such as xanthine oxidase-xanthine and neutrophils, was incubated at a physiological pH (pH 7.0-7.5) for a suitable reaction period (30s), then an aliquot (300 microliters) was pipetted out and squirted into 600 microliters of 0.5 M NaOH to stabilize O2- (pH-jump). The alkaline mixture was promptly introduced into an ESR tube and frozen by dipping the tube directly into a cooling liquid. A typical signal of O2- was detected by ESR spectroscopy and the amount of trapped O2- was measured quantitatively at 77 K. The back reaction of O2- generation from H2O2 was negligible in 0.5 M NaOH. To avoid any artificial spectrum due to autoxidation of biological samples by the pH-jump procedure, the background spectrum should be subtracted from the obtained spectrum. This pH-jump method should be widely available for direct demonstration of O2- production in biological systems at physiological pH, because an advantage of this method is the simple operation for trapping O2- without the use of any rapid-mixing apparatus as compared with the rapid freezing method.     

Rapid Communication: Neuropeptide Expression and Processing as Revealed by Direct Matrix-Assisted Laser Desorption Ionization Mass Spectrometry of Single Neurons

Abstract: Neuropeptides were directly detected in single identified neurons and the neurohemal area of peptidergic (neuroendocrine) systems in the Lymnaea brain by using matrix-assisted laser desorption ionization mass spectrometry (MALDI-MS). The samples were placed in matrix solution and ruptured to allow mixing of cell contents with the matrix solution. After formation of matrix crystals, the analytes were analyzed by MALDI-MS. It was surprising that clean mass spectra were produced, displaying extreme sensitivity of detection. In one of the neuroendocrine systems studied, we could demonstrate for the first time, by comparing the peptide patterns of soma and of neurohemal axon terminals, that processing of the complex prohormone expressed in this system occurs entirely in the soma. In the other system studied, novel peptides could be detected in addition to peptides previously identified by conventional molecular biological and peptide chemical methods. Thus, complex peptide processing and expression patterns could be predicted that were not detected in earlier studies using conventional methods. As the first MALDI- MS study of direct peptide fingerprinting in the single neuron these experients demonstrate that MALDI-MS forms a new and valuable approach to the study of the synthesis and expression of bioactive peptides, with potential application to single-cell studies in vertebrates, including humans.     

Direct observations of the redox states of frozen cherry buds by a unique in vivo ESR

Low temperatures cause cellular damage in flower buds of the sweet cherry (Prunus avium L. cv. Satohnishiki). In this study, the redox states within the cherry buds suffering freezing damage were non-destructively observed by a unique in vivo electron spin resonance (ESR) technique with a spin probe such as carbamoyl-PROXYL. The ESR signals of carbamoyl-PROXYL-treated bud were continuously recorded under freezing and thawing condition, which was decreased to approximately -4 degrees C and maintained for 1.5h, and then returned to room temperature. Most of the buds began to freeze at -2.5 to -3.9 degrees C. The peak areas of the ESR signals significantly increased during the period of temperature rise. These results show that the reduced carbamoyl-PROXYL within the frozen bud was re-oxidized and became ESR-detectable while the bud was thawing. Our in vivo ESR technique has confirmed the oxidative transition of the redox states within the buds during thawing.     

Role of the Adenine Ligand on the Stabilization of the Secondary and Tertiary Interactions in the Adenine Riboswitch

Riboswitches are RNA-based genetic control elements that function via a conformational transition mechanism when a specific target molecule binds to its binding pocket. To facilitate an atomic detail interpretation of experimental investigations on the role of the adenine ligand on the conformational properties and kinetics of folding of the add adenine riboswitch, we performed molecular dynamics simulations in both the presence and the absence of the ligand. In the absence of ligand, structural deviations were observed in the J23 junction and the P1 stem. Destabilization of the P1 stem in the absence of ligand involves the loss of direct stabilizing interactions with the ligand, with additional contributions from the J23 junction region. The J23 junction of the riboswitch is found to be more flexible, and the tertiary contacts among the junction regions are altered in the absence of the adenine ligand; results suggest that the adenine ligand associates and dissociates from the riboswitch in the vicinity of J23. Good agreement was obtained with the experimental data with the results indicating dynamic behavior of the adenine ligand on the nanosecond time scale to be associated with the dynamic behavior of hydrogen bonding with the riboswitch. Results also predict that direct interactions of the adenine ligand with U74 of the riboswitch are not essential for stable binding although it is crucial for its recognition. The possibility of methodological artifacts and force-field inaccuracies impacting the present observations was checked by additional molecular dynamics simulations in the presence of 2,6-diaminopurine and in the crystal environment.     

Direct and Indirect Effects of Solar Ultraviolet Radiation on Attached Bacteria and Algae in Lotic Systems

I examined the effects of solar ultraviolet radiation (UVR) on attached bacteria and algal densities in lotic systems in outdoor artificial stream apparatus. Flumes were covered with four types of film for UVR screening treatments, and attached bacterial cell densities and their temporal variations were compared between conditions excluding and including solar UVR. Attached bacterial cell densities were depressed by solar UVR, and both accrual rate and saturated density were significantly lower in the +UVR (full solar radiation) condition than in −UVR and dark conditions. Solar UVR also indirectly affected the rate of algal accrual. Microscopic direct observations of attached bacterial cell density and algae on substrata showed that solar UVR depressed the accrual of attached bacteria and consequently the frequency of sites with high bacterial cell density that can trap suspended algae in the water. The final amount of algal accrual in the +UVR condition was one-fourth of that in the −UVR condition. Therefore, the effects of solar UVR may be more serious in systems where periphyton are frequently removed by floods.