Carbon and Nitrogen Sources for Protein Synthesis and Growth of Sugar-beet Leaves

Protein synthesis in very young leaves utilizes carbon fromphotosynthesis and from translocated sucrose, and nitrogen translocatedin both xylem and phloem. The carbon of young leaf protein isderived mainly from assimilated CO₂, while translocated sucrosecontributes proportionately more of its carbon to insolublecarbohydrate. Most protein amino-acids become labelled from¹⁴CO₂, glutamate being the notable exception. Glutamine or glutamateis synthesized from sucrose in roots, and is translocated toyoung leaves. It is suggested that a small but significant proportionof the nitrogen requirement of the young leaf is translocatedfrom roots as glutamine, in the phloem. Inorganic nitrogen istranslocated in xylem.     

Role of Carbon and Nitrogen Sources in Bacterial Growth and Sporulation

A simple growth medium is reported, in which Bacillus megaterium forms heat-stable spores, heat-labile spores, or only vegetative cells by changing the carbon and nitrogen source. Studies carried out in such media could be very useful in elucidating biochemical events which lead to bacterial sporulation.     

Assimilatory Sulfur Metabolism in Marine Microorganisms: Sulfur Metabolism, Protein Synthesis, and Growth of Alteromonas luteo-violaceus and Pseudomonas halodurans During Perturbed Batch Growth

The antibiotic protein synthesis inhibitor chloramphenicol specifically blocked the incorporation of [³⁵S]sulfate into the residue protein of two marine bacteria, Pseudomonas halodurans and Alteromonas luteo-violaceus. Simultaneous inhibition of total protein synthesis occurred, but incorporation of ³⁵S into low-molecular-weight organic compounds continued. A. luteo-violaceus rapidly autolyzed, with similar reduction in cell counts, total culture protein and cellular sulfur, whereas P. halodurans remained viable. Treatment with chloramphenicol, growth during nitrogen and carbon limitation, and the carbon and energy sources used for growth did not alter the sulfur content of P. halodurans protein. The mean value (1.09%, by weight), representing a wide variety of environmentally relevant growth conditions, was in agreement with model protein composition. The variability of cellular composition of P. halodurans and A. luteo-violaceus is discussed with respect to the measurement of bacterial growth in natural environments. Total carbon and nitrogen per cell varied greatly (coefficient of variation, ca. 100%) depending on growth conditions. Variation in total sulfur and protein per cell was much less (coefficient of variation, <50%), but the least variation was found for sulfate incorporation into residue protein (coefficient of variation, ca. 15%). Thus, sulfate incorporation into residue protein can be used as an accurate measurement of de novo protein synthesis in these bacteria.     

Manipulation of the Dissolved Organic Carbon Pool in an Agricultural Stream: Responses in Microbial Community Structure, Denitrification, and Assimilatory Nitrogen Uptake

Carbon (C) and nitrogen (N) are strongly coupled across ecosystems due to stoichiometrically balanced assimilatory demand as well as dissimilatory processes such as denitrification. Microorganisms mediate these biogeochemical cycles, but how microbial communities respond to environmental changes, such as dissolved organic carbon (DOC) availability, and how those responses impact coupled biogeochemical cycles in streams is not clear. We enriched a stream in central Indiana with labile DOC for 5?days to investigate coupled C and N cycling. Before, and on day 5 of the enrichment, we examined assimilatory uptake and denitrification using whole-stream ¹⁵N-nitrate tracer additions and short-term nitrate releases. Concurrently, we measured bacterial and denitrifier abundance and community structure. We predicted N assimilation and denitrification would be stimulated by the addition of labile C and would be mediated by increases in bacterial activity, abundance, and a shift in community structure. In response to the twofold increase in DOC concentrations in the water column, N assimilation increased throughout the enrichment. Community respiration doubled during the enrichment and was associated with a change in bacterial community structure (based on terminal restriction fragment length polymorphisms of the 16S rRNA gene). In contrast, there was little response in denitrification or denitrifier community structure, likely because labile C was assimilated by heterotrophic communities on the stream bed prior to reaching denitrifiers within the sediments. Our results suggest that coupling between C and N in streams involves potentially complex interactions with sediment texture and organic matter, microbial community structure, and possibly indirect biogeochemical pathways.     

Nitrogen, Carbon, and Sulfur Metabolism in Natural Thioploca Samples

Filamentous sulfur bacteria of the genus Thioploca occur as dense mats on the continental shelf off the coast of Chile and Peru. Since little is known about their nitrogen, sulfur, and carbon metabolism, this study was undertaken to investigate their (eco)physiology. Thioploca is able to store internally high concentrations of sulfur globules and nitrate. It has been previously hypothesized that these large vacuolated bacteria can oxidize sulfide by reducing their internally stored nitrate. We examined this nitrate reduction by incubation experiments of washed Thioploca sheaths with trichomes in combination with ¹⁵N compounds and mass spectrometry and found that these Thioploca samples produce ammonium at a rate of 1 nmol min⁻¹ mg of protein⁻¹. Controls showed no significant activity. Sulfate was shown to be the end product of sulfide oxidation and was observed at a rate of 2 to 3 nmol min⁻¹ mg of protein⁻¹. The ammonium and sulfate production rates were not influenced by the addition of sulfide, suggesting that sulfide is first oxidized to elemental sulfur, and in a second independent step elemental sulfur is oxidized to sulfate. The average sulfide oxidation rate measured was 5 nmol min⁻¹ mg of protein⁻¹ and could be increased to 10.7 nmol min⁻¹ mg of protein⁻¹ after the trichomes were starved for 45 h. Incorporation of ¹⁴CO₂ was at a rate of 0.4 to 0.8 nmol min⁻¹ mg of protein⁻¹, which is half the rate calculated from sulfide oxidation. [2-¹⁴C]acetate incorporation was 0.4 nmol min⁻¹ mg of protein⁻¹, which is equal to the CO₂ fixation rate, and no ¹⁴CO₂ production was detected. These results suggest that Thioploca species are facultative chemolithoautotrophs capable of mixotrophic growth. Microautoradiography confirmed that Thioploca cells assimilated the majority of the radiocarbon from [2-¹⁴C]acetate, with only a minor contribution by epibiontic bacteria present in the samples.     

几种不同碳、氮源对隐甲藻生长及二十二碳六烯酸产量的影响

目的：找出有利于隐甲藻生长和二十二碳六烯酸（DHA）积累的碳、氮源。方法：利用不同碳、氮源培养隐甲藻,收集藻体后提取脂肪酸并甲酯化,然后利用毛细管气相色谱法进行分析。结果：最适的单一碳、氮源分别为葡萄糖、酵母粉,在此培养条件下隐甲藻培养72h后的生物量（干重）和DHA产量分别为3．90和0．642g／L。结论：葡萄糖、酵母粉分别作为碳、氮源时更有利于隐甲藻的生长和DHA的积累。     

Effects of Air Contact on Growth,Inorganic Carbon Sources,and Nitrogen Uptake by an Amphibious Freshwater Macrophyte

Callitriche cophocarpa Sendtner is a heterophyllous amphibious macrophyte that produces apical rosettes of floating leaves. The importance of air contact for inorganic carbon and N uptake and for growth was investigated. Plants were grown with the floating rosette in contact with air of various humidities (10, 50, and >90% relative humidity) and with the submerged parts in N-free water at 350 [mu]M free CO2 and the roots in sediment with low or high NH3-N content. Humidity greatly affected the transpiration rate, whereas growth rate and N content were unaffected and were comparable to values measured for fully submerged shoots. Air contact had, however, a significant impact on growth when the free CO2 concentration in the water was low. Thus, the growth rate of shoots with air contact was about 3 times faster than the rate of fully submerged shoots when grown at air-equilibrium concentration of dissolved free CO2 in the water (16 [mu]M). This difference decreased with increased dissolved free CO2 concentration in the water, and the two shoot types grew at the same rate when the submerged shoots received >350 [mu]M free CO2. The quantitative importance of the floating rosette for total carbon uptake declined also with decreased ratio of floating rosette to total shoot weight. It is concluded that floating rosettes can enhance the inorganic carbon uptake of Callitriche. In contrast, air contact is of minor importance for nutrient transport.     

碳源和氮源对黑盖木层孔菌菌丝生长的影响

研究了四种碳源(蔗糖、乳糖、葡萄糖、可溶性淀粉)和九种氮源(玉米面、麸皮、马铃薯、大豆粉、酵母粉、蛋白胨、硝酸钾、硝酸铵、尿素)对黑盖木层孔菌菌丝生长的影响。从不同代数的菌丝体中提取多糖,并测定多糖含量、分子量分布范围及单糖组成。结果表明:黑盖木层孔菌菌丝生长的最佳碳源为可溶性淀粉,最佳氮源为玉米面,最优碳氮组合为蔗糖和玉米面的组合。不同代数的菌丝体多糖性状基本稳定。     

不同碳氮营养源和培养温度对大球盖菇菌丝生长的影响

研究了碳源、氮源和温度对大球盖菇菌丝生长的影响,结果表明碳源中蔗糖对大球盖菇的菌丝生长最有利,其次为可溶性淀粉. 氮源中尿素最好,其次为蛋白胨和酵母膏;经温度梯度试验得出大球盖菇菌丝生长温度在 5～35 ℃,适宜生长温度为 25～30 ℃.经生料栽培发现大球盖菇适于麦秸、稻草上生长.     

Utilization of Organic Nitrogen Sources by Two Phytoplankton Species and a Bacterial Isolate in Pure and Mixed Cultures

Algal production of dissolved organic carbon and the regeneration of nutrients from dissolved organic carbon by bacteria are important aspects of nutrient cycling in the sea, especially when inorganic nitrogen is limiting. Dissolved free amino acids are a major carbon source for bacteria and can be used by phytoplankton as a nitrogen source. We examined the interactions between the phytoplankton species Emiliania huxleyi and Thalassiosira pseudonana and a bacterial isolate from the North Sea. The organisms were cultured with eight different amino acids and a protein as the only nitrogen sources, in pure and mixed cultures. Of the two algae, only E. huxleyi was able to grow on amino acids. The bacterium MD1 used all substrates supplied, except serine. During growth of MD1 in pure culture, ammonium accumulated in the medium. Contrary to the expectation, the percentage of ammonium regenerated from the amino acids taken up showed no correlation with the substrate C/N ratio. In mixed culture, the algae grew well in those cultures in which the bacteria grew well. The bacterial yields (cell number) were also higher in mixed culture than in pure culture. In the cultures of MD1 and T. pseudonana, the increase in bacterial yield (number of cells) over that of the pure culture was comparable to the bacterial yield in mixed culture on a mineral medium. This result suggests that T. pseudonana excreted a more-or-less-constant amount of carbon. The bacterial yields in mixed cultures with E. huxleyi showed a smaller and less consistent difference than those of the pure cultures of MD1. It is possible that the ability of E. huxleyi to use amino acids influenced the bacterial yield. The results suggest that interactions between algae and bacteria influence the regeneration of nitrogen from organic carbon and that this influence differs from one species to another.     

The Role of Dissolved Organic Carbon, Dissolved Organic Nitrogen, and Dissolved Inorganic Nitrogen in a Tropical Wet Forest Ecosystem

Although tropical wet forests play an important role in the global carbon (C) and nitrogen (N) cycles, little is known about the origin, composition, and fate of dissolved organic C (DOC) and N (DON) in these ecosystems. We quantified and characterized fluxes of DOC, DON, and dissolved inorganic N (DIN) in throughfall, litter leachate, and soil solution of an old-growth tropical wet forest to assess their contribution to C stabilization (DOC) and to N export (DON and DIN) from this ecosystem. We found that the forest canopy was a major source of DOC (232 kg C ha^–1 y^–1). Dissolved organic C fluxes decreased with soil depth from 277 kg C ha^–1 y^–1 below the litter layer to around 50 kg C kg C ha^–1 y^–1 between 0.75 and 3.5m depth. Laboratory experiments to quantify biodegradable DOC and DON and to estimate the DOC sorption capacity of the soil, combined with chemical analyses of DOC, revealed that sorption was the dominant process controlling the observed DOC profiles in the soil. This sorption of DOC by the soil matrix has probably led to large soil organic C stores, especially below the rooting zone. Dissolved N fluxes in all strata were dominated by mineral N (mainly NO₃⁻). The dominance of NO₃^– relative to the total amount nitrate of N leaching from the soil shows that NO₃^– is dominant not only in forest ecosystems receiving large anthropogenic nitrogen inputs but also in this old-growth forest ecosystem, which is not N-limited.     

Isolation and Characterization of a Fast-Growing, Thermophilic Methanobacterium Species

A thermophilic, autotrophic methanogen (strain CB12, DSM 3664) was isolated from a mesophilic biogas digestor. This bacterium used H₂-CO₂ or formate as a substrate and grew as short rods, sometimes in pairs and in crooked filaments. Motility was not observed. Its optimum temperature (56°C) was lower than that of other thermophilic members of the genus Methanobacterium. The maximum observed specific growth rate was 0.564 h⁻¹ (74-min doubling time).     

Growth, Nitrogen Fixation, and Spectral Attenuation in Cultivated Trichodesmium Species

Physiological studies of Trichodesmium species have been hindered by difficulties in maintaining actively growing, nitrogen-fixing cultures. Previous cultivation successes have not been widely duplicated. We present here a simple modified seawater medium and handling techniques which have been used to maintain actively growing Trichodesmium thiebautii in laboratory culture for over 1 year. The cultured population, isolated from coastal Atlantic waters, has a growth rate of 0.23 division day^-1 and exhibits light-dependent nitrogen fixation during exponential growth. Various morphologies, including solitary trichomes, and aggregates (spherical puffs and fusiform tufts) are present during growth. Spectral and scalar irradiance were measured within naturally occurring (coastal Atlantic) aggregates with small (diameter, 50 to 70 μm) spherical fiber-optic sensors. In contrast to naturally occurring puffs, cultivated Trichodesmium aggregates exhibited spectral properties consistent with low-light adaptation. Cultivated puff-type aggregates were also examined by using oxygen microelectrodes. The simple medium and approach used for cultivation should be easily reproducible and amenable to further manipulations and modifications useful for physiological studies of Trichodesmium spp. in culture.     

铜、镉胁迫下施硫肥和有机肥对冬小麦碳氮运转的影响

采用盆栽试验,研究了铜、镉胁迫条件下施硫和有机肥对冬小麦碳氮运转的影响。结果表明,与各自对照相比,铜、镉胁迫下低施硫和有机肥的处理增加了小麦叶片、茎鞘、颖壳穗轴等营养器官花前贮藏物质、氮素的再运转量和运转率以及营养器官花前贮藏物质、氮素的总再运转量和总运转率,高施硫和有机肥的铜、镉处理则规律性不明显。在铜、镉胁迫条件下,施用硫肥和有机肥处理增加了小麦成熟期籽粒重和花后光合同化物输入籽粒量以及籽粒氮素含量和花后氮素积累量。与各自对照相比,铜胁迫下施硫和有机肥的处理与镉胁迫下低施硫和有机肥的处理增加了成熟期小麦的穗数、穗粒数和千粒重,提高了籽粒产量,其中以T\-5处理增产幅度最大;镉胁迫下高施硫和有机肥的处理则变化不大。铜、镉胁迫下低施硫和有机肥的处理均增加了籽粒淀粉含量,而高施硫和有机肥的铜、镉处理则未表现出此规律。此外,铜、镉胁迫下施硫和有机肥的各处理增加了籽粒蛋白质的含量。     

Nitrogen Metabolism of Lemna minor. I. Growth, Nitrogen Sources and Amino Acid Inhibition

Lemna minor grown in sterile culture on a minerals-sucrose medium can utilize as nitrogen source, in order of increasing growth rate: ammonia, nitrate, a mixture of glutamic and aspartic acids plus arginine, or a balanced mixture of amino acids (hydrolyzed casein). Maximum growth is found with nitrate plus hydrolyzed casein.Many synthetic mixtures of amino acids are unable to support growth. Many single amino acids are inhibitory, and when added (at 2 mm or less) to cultures, growing in the presence of nitrate, cause a decrease in growth rate or even death of the plants (e.g. with alanine, valine, methionine or leucine). Some of these inhibitory effects are also found when the amino acid is added to cultures growing on ammonia or hydrolyzed casein. Arginine was the only amino acid of those tested which gave a marked stimulation of growth when added to cultures growing with inorganic nitrogen.The rapid rate of growth, sterile nature of tissue, decreased biological variation of samples containing many plants and ability to utilize different culture media make this an attractive organism for studies on higher plant metabolism.     

Sugars and Amino Acids as Carbon, Nitrogen, or Energy Sources for Coccidioides immitis Spherules and Endospores

Of various carbohydrates and amino acids tested, glucose, mannose, fructose, and glutamate were the most efficient substrates metabolized by the endospores and spherules of Coccidioides immitis.     

Dissolved Organic Carbon in Alaskan Boreal Forest: Sources, Chemical Characteristics, and Biodegradability

The fate of terrestrially-derived dissolved organic carbon (DOC) is important to carbon (C) cycling in both terrestrial and aquatic environments, and recent evidence suggests that climate warming is influencing DOC dynamics in northern ecosystems. To understand what determines the fate of terrestrial DOC, it is essential to quantify the chemical nature and potential biodegradability of this DOC. We examined DOC chemical characteristics and biodegradability collected from soil pore waters and dominant vegetation species in four boreal black spruce forest sites in Alaska spanning a range of hydrologic regimes and permafrost extents (Well Drained, Moderately Well Drained, Poorly Drained, and Thermokarst Wetlands). DOC chemistry was characterized using fractionation, UV–Vis absorbance, and fluorescence measurements. Potential biodegradability was assessed by incubating the samples and measuring CO₂ production over 1 month. Soil pore water DOC from all sites was dominated by hydrophobic acids and was highly aromatic, whereas the chemical composition of vegetation leachate DOC varied significantly with species. There was no seasonal variability in soil pore water DOC chemical characteristics or biodegradability; however, DOC collected from the Poorly Drained site was significantly less biodegradable than DOC from the other three sites (6% loss vs. 13–15% loss). The biodegradability of vegetation-derived DOC ranged from 10 to 90% loss, and was strongly correlated with hydrophilic DOC content. Vegetation such as Sphagnum moss and feathermosses yielded DOC that was quickly metabolized and respired. In contrast, the DOC leached from vegetation such as black spruce was moderately recalcitrant. Changes in DOC chemical characteristics that occurred during microbial metabolism of DOC were quantified using fractionation and fluorescence. The chemical characteristics and biodegradability of DOC in soil pore waters were most similar to the moderately recalcitrant vegetation leachates, and to the microbially altered DOC from all vegetation leachates.     

Growth and Transcriptional Changes in Poplar Under Different Nitrogen Sources

Plant Molecular Biology Reporter - Nitrogen greatly affects primary plant growth and development. The relationship between nitrogen availability and source and its effect on secondary growth is...     

Reactive Oxygen,Nitrogen, Carbonyl and Sulfur Species and Their Roles in Plant Abiotic Stress Responses and Tolerance

Plants being sessile organisms are often exposed to various abiotic stress conditions, which greatly hamper the growth, yields as well as the quality of produce. Plants respond to abiotic stresses in an exceptionally complex and coordinated manner, involving the interactions and crosstalk with many metabolic-molecular pathways. One of the most common responses is generation of reactive chemical species including reactive oxygen species (ROS), reactive nitrogen species (RNS), reactive carbonyl species (RCS) and reactive sulfur species (RSS). ROS and RNS have long attracted attention from the plant researchers for both their damaging as well as protective effects. However, several reports are emerging to confirm similar roles played by the relatively newer 'reactive' members, the RCS and RSS. Plant reactive species are also hailed as vivacious signaling molecules that play regulatory roles in many plant metabolic procedures. Undeniably, these reactive species are involved in virtually all aspects of plant cell functions. Reactive species and the antioxidant machinery maintain a delicate but critical cellular redox-balance which gets disturbed under stress conditions, where their biosynthesis, transportation, scavenging and the overall metabolism gets decisive for plant survival. The current review aims to highlight and discuss the role of ROS, RNS, RCS, and RSS in plants especially under abiotic stresses, cross-talks between them, current approaches and technological advents for their characterization, and a perspective view on exploration/manipulation of the pathways and check-points involved in biosynthesis, transport and scavenging of these reactive species for engineering abiotic stress tolerant crop plants.