Flow extremes and benthic organic matter shape the metabolism of a headwater Mediterranean stream

1. Single‐station diel oxygen curves were used to monitor the oxygen metabolism of an intermittent, forested third‐order stream (Fuirosos) in the Mediterranean area, over a period of 22 months. Ecosystem respiration (ER) and gross primary production (GPP) were estimated and related to organic matter inputs and photosynthetically active radiation (PAR) in order to understand the effect of the riparian forest on stream metabolism. 2. Annual ER was 1690 g O₂ m^?2 year^?1 and annual GPP was 275 g O₂ m^?2 year^?1. Fuirosos was therefore a heterotrophic stream, with P : R ratios averaging 0.16. 3. GPP rates were relatively low, ranging from 0.05 to 1.9 g O₂ m^?2 day^?1. The maximum values of GPP occurred during a few weeks in spring, and ended when the riparian canopy was fully closed. The phenology of the riparian vegetation was an important determinant of light availability, and consequently, of GPP. 4. On a daily scale, light and temperature were the most important factors governing the shape of photosynthesis–irradiance (P–I) curves. Several patterns could be generalised in the P–I relationships. Hysteresis‐type curves were characteristic of late autumn and winter. Light saturation responses (that occurred at irradiances higher than 90 μE m^?2 s^?1) were characteristic of early spring. Linear responses occurred during late spring, summer and early autumn when there was no evidence of light saturation. 5. Rates of ER were high when compared with analogous streams, ranging from 0.4 to 32 g O₂ m^?2 day^?1. ER was highest in autumn 2001, when organic matter accumulations on the streambed were extremely high. By contrast, the higher discharge in autumn 2002 prevented these accumulations and caused lower ER. The Mediterranean climate, and in its effect the hydrological regime, were mainly responsible for the temporal variation in benthic organic matter, and consequently of ER.     

Fluctuating water levels control water chemistry and metabolism of a charophyte‐dominated pond

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Annual cycle and inter-annual variability of gross primary production and ecosystem respiration in a floodprone river during a 15-year period

1. Temporal variation in ecosystem metabolism over a 15‐year period (1986–2000) was evaluated in a seventh order channelised gravel bed river (mean annual discharge 48.7 m³ s^?1) of the Swiss Plateau. The river is subject to frequent disturbance by bed‐moving spates. Daily integrals of gross primary production (GPP) and ecosystem respiration (ER) were calculated based on single‐station diel oxygen curves. 2. Seasonal decomposition of the time series of monthly metabolism rates showed that approximately 50% of the variation of GPP and ER can be attributed to season. Annual GPP averaged 5.0 ± 0.6 g O₂ m^?2 day^?1 and showed no long‐term trend. 3. Ecosystem respiration, averaging 6.2 ± 1.4 g O₂ m^?2 day^?1, declined from 8.8 to 4.1 g O₂ m^?2 day^?1 during the 15‐year period. This significant trend paralleled a decline in nitrate and soluble reactive phosphorus concentrations, and the biochemical oxygen demand discharged by sewage treatment facilities upstream of the study reach. The ratio of GPP to ER (P/R) increased from 0.53 to about 1 as consequence of ER reduction. 4. Bed moving spates reduced GPP by 49% and ER by 19%. Postspate recovery of GPP was rapid between spring and autumn and slow during winter. Recovery of ER lacked any seasonal pattern. Annual patterns of daily GPP and to a minor extent of daily ER can be described as a sequence of recovery periods frequently truncated by spates. 5. The study showed that disturbance by frequent bed‐moving spates resulted in major stochastic variation in GPP and ER but annual patterns were still characterised by a distinct seasonal cycle. It also became evident that stream metabolism is a suitable method to assess effects of gradual changes in water quality.     

Macrophytic, epipelic and epilithic primary production in a semiarid Mediterranean stream

Summary 1. Primary production by Chara vulgaris and by epipelic and epilithic algal assemblages was measured in a semiarid, Mediterranean stream (Chicamo stream, Murcia, Spain) during one annual cycle. 2. The rates of gross primary production (GPP) and community respiration (CR) were determined for each algal assemblage using oxygen change in chambers. The net daily metabolism (NDM) and the GPPd^?1 : CR₂₄ ratio were estimated by patch‐weighting the assemblage‐level metabolism values. 3. Gross primary production and CR showed significant differences between assemblages and dates. The highest rates were measured in summer and spring, while December was the only month when there were no significant differences in either parameters between assemblages. GPP was strongly correlated with respiration, but not with algal biomass. 4. Chara vulgaris showed the highest mean annual metabolic rates (GPP = 2.80 ± 0.83 gC m^?2 h^?1, CR = 0.76 ± 0.29 gC m^?2 h^?1), followed by the epilithic assemblage (GPP = 1.97 ± 0.73 gC m^?2 h^?1, CR = 0.41 ± 0.12 gC m^?2 h^?1) and epipelic algae (GPP = 1.36 ± 0.22 gC m^?2 h^?1, CR = 0.39 ± 0.06 gC m^?2 h^?1). 5. The epipelic assemblage dominated in terms of biomass (82%) and areal cover (88%), compared with the other primary producers. Epipelic algae contributed 84% of gross primary production and 86% of community respiration in the stream. 6. Mean monthly air temperature was the best single predictor of macrophyte respiration and of epipelic GPP and CR. However, ammonium concentration was the best single predictor of C. vulgaris GPP, and suspended solid concentration of epilithon GPP and CR. 7. Around 70% of the variation in both mean GPP and mean CR was explained by the mean monthly air temperature alone. A multiple regression model that included conductivity, PAR and nitrates in addition to mean monthly air temperature, explained 99.99% of the variation in mean CR. 8. Throughout the year, NDM was positive (mean value 7.03 gC m^?2 day^?1), while the GPP : CR₂₄ ratio was higher than 1, confirming the net autotrophy of the system.     

Response of river metabolism to restoration of flow in the Kissimmee River, Florida, U.S.A.

1. The single station diel oxygen curve method was used to determine the response of system metabolism to backfilling of a flood control canal and restoration of flow through the historic river channel of the Kissimmee River, a sub‐tropical, low gradient, blackwater river in central Florida, U.S.A. Gross primary productivity (GPP), community respiration (CR), the ratio of GPP/CR (P/R) and net daily metabolism (NDM) were estimated before and after canal backfilling and restoration of continuous flow through the river channel. 2. Restoration of flow through the river channel significantly increased reaeration rates and mean dissolved oxygen (DO) concentrations from <2 mg L⁻¹ before restoration of flow to 4.70 mg L⁻¹ after flow was restored. 3. Annual GPP and CR rates were 0.43 g O₂ m⁻² day⁻¹ and 1.61 g O₂ m⁻² day⁻¹ respectively, before restoration of flow. After restoration of flow, annual GPP and CR rates increased to 3.95 O₂ m⁻² day⁻¹ and 9.44 g O₂ m⁻² day⁻¹ respectively. 4. The ratio of P/R (mean of monthly values) increased from 0.29 during the prerestoration period to 0.51 after flow was restored, indicating an increase in autotrophic processes in the restored river channel. NDM values became more negative after flow was restored. 5. After flow was restored, metabolism parameters were generally similar to those reported for other blackwater river systems in the southeast U.S.A. Postrestoration DO concentrations met target values derived from free flowing, minimally impacted reference streams.     

Seasonal and interannual variation in carbon dioxide exchange and carbon balance in a northern temperate grassland

Net ecosystem carbon dioxide (CO₂) exchange (NEE) was measured in a northern temperate grassland near Lethbridge, Alberta, Canada for three growing seasons using the eddy covariance technique. The study objectives were to document how NEE and its major component processes—gross photosynthesis (GPP) and total ecosystem respiration (TER)—vary seasonally and interannually, and to examine how environmental and physiological factors influence the annual C budget. The greatest difference among the three study years was the amount of precipitation received. The annual precipitation for 1998 (481.7 mm) was significantly above the 1971–2000 mean (± SD, 377.9 ± 97.0 mm) for Lethbridge, whereas 1999 (341.3 mm) was close to average, and 2000 (275.5 mm) was significantly below average. The high precipitation and soil moisture in 1998 allowed a much higher GPP and an extended period of net carbon gain relative to 1999 and 2000. In 1998, the peak NEE was a gain of 5 g C m^?2 d^?1 (day 173). Peak NEE was lower and also occurred earlier in the year on days 161 (3.2 g C m^?2 d^?1) and 141 (2.4 g C m^?2 d^?1) in 1999 and 2000, respectively. Change in soil moisture was the most important ecological factor controlling C gain in this grassland ecosystem. Soil moisture content was positively correlated with leaf area index (LAI). Gross photosynthesis was strongly correlated with changes in both LAI and canopy nitrogen (N) content. Maximum GPP (A_max: value calculated from a rectangular hyperbola fitted to the relationship between GPP and incident photosynthetic photon flux density (PPFD)) was 27.5, 12.9 and 8.6 µmol m^?2 s^?1 during 1998, 1999 and 2000, respectively. The apparent quantum yield also differed among years at the time of peak photosynthetic activity, with calculated values of 0.0254, 0.018 and 0.018 during 1998, 1999 and 2000, respectively. The ecosystem accumulated a total of 111.9 g C m^?2 from the time the eddy covariance measurements were initiated in June 1998 until the end of December 2000, with most of that C gained during 1998. There was a net uptake of almost 21 g C m^?2 in 1999, whereas a net loss of 18 g C m^?2 was observed in 2000. The net uptake of C during 1999 was the combined result of slightly higher GPP (287.2 vs. 272.3 g C m^?2 year^?1) and lower TER (266.6 vs. 290.4 g C m^?2 year^?1) than occurred in 2000.     

Temperature and the metabolic balance of streams

1. It is becoming increasingly clear that fresh waters play a major role in the global C cycle. Stream ecosystem respiration (ER) and gross primary productivity (GPP) exert a significant control on organic carbon fluxes in fluvial networks. However, little is known about how climate change will influence these fluxes. 2. Here, we used a ‘natural experiment’ to demonstrate the role of temperature and nutrient cycling in whole‐system metabolism (ER, GPP and net ecosystem production – NEP), in naturally heated geothermal (5–25 °C) Icelandic streams. 3. We calculated ER and GPP with a new, more accurate method, which enabled us to take into account the additional uncertainties owing to stream spatial heterogeneity in oxygen concentrations within a reach. ER ranged 1–25 g C m^?2 day^?1 and GPP 1–10 g C m^?2 day^?1. The median uncertainties (based on 1 SD) in ER and GPP were 50% and 20%, respectively. 4. Despite extremely low water nutrient concentrations, high metabolic rates in the warm streams were supported by fast cycling rates of nutrients, as revealed from inorganic nutrient (N, P) addition experiments. 5. ER exceeded GPP in all streams (with average GPP/ER = 0.6) and was more strongly related to temperature than GPP, resulting in elevated negative NEP with warming. We show that, as a first approximation based on summer investigations, global stream carbon emission to the atmosphere would nearly double from 0.12 Pg C year^?1 at 13 °C to 0.21 (0.15–0.33) Pg C year^?1 with a 5 °C warming. 6. Compared to previous studies from natural systems (including terrestrial ecosystems), the temperature dependence of stream metabolism was not confounded by latitude or altitude, seasonality, light and nutrient availability, water chemistry, space availability (water transient storage), and water availability. 7. Consequently, stream nutrient processing is likely to increase with warming, protecting downstream ecosystems (rivers, estuaries, coastal marine systems) during the summer low flows from nutrient enrichment, but at the cost of increased CO₂ flux back to the atmosphere.     

Carbon sequestration and ecosystem respiration for 4 years in a Scots pine forest

The net exchange of CO₂ (NEE) between a Scots pine (Pinus sylvestris L.) forest ecosystem in eastern Finland and the atmosphere was measured continuously by the eddy covariance (EC) technique over 4 years (1999–2002). The annual temperature coefficient (Q₁₀) of ecosystem respiration (R) for these years, respectively, was 2.32, 2.66, 2.73 and 2.69. The light‐saturated rate of photosynthesis (A_max) was highest in July or August, with an annual average A_max of 10.9, 14.6, 15.3 and 17.1 μmol m^?2 s^?1 in the 4 years, respectively. There was obvious seasonality in NEE, R and gross primary production (GPP), exhibiting a similar pattern to photosynthetically active radiation (PAR) and air temperature. The integrated daily NEE ranged from 2.59 to ?4.97 g C m^?2 day^?1 in 1999, from 2.70 to ?4.72 in 2000, from 2.61 to ?4.71 in 2001 and from 5.27 to ?4.88 in 2002. The maximum net C uptake occurred in July, with the exception of 2000, when it was in June. The interannual variation in ecosystem C flux was pronounced. The length of the growing season, based on net C uptake, was 179, 170, 175 and 176 days in 1999–2002, respectively, and annual net C sequestration was 152, 101, 172 and 205 g C m^?2 yr^?1. It is estimated that ecosystem respiration contributed 615, 591, 752 and 879 g C m^?2 yr^?1 to the NEE in these years, leading to an annual GPP of ?768, ?692, ?924 and ?1084 g C m^?2 yr^?1. It is concluded that temperature and PAR were the main determinants of the ecosystem CO₂ flux. Interannual variations in net C sequestration are predominantly controlled by average air temperature and integrated radiation in spring and summer. Four years of EC data indicate that boreal Scots pine forest ecosystem in eastern Finland acts as a relatively powerful carbon sink. Carbon sequestration may benefit from warmer climatic conditions.     

Modelling night‐time ecosystem respiration by a constrained source optimization method

One of the main challenges to quantifying ecosystem carbon budgets is properly quantifying the magnitude of night‐time ecosystem respiration. Inverse Lagrangian dispersion analysis provides a promising approach to addressing such a problem when measured mean CO₂ concentration profiles and nocturnal velocity statistics are available. An inverse method, termed ‘Constrained Source Optimization’ or CSO, which couples a localized near‐field theory (LNF) of turbulent dispersion to respiratory sources, is developed to estimate seasonal and annual components of ecosystem respiration. A key advantage to the proposed method is that the effects of variable leaf area density on flow statistics are explicitly resolved via higher‐order closure principles. In CSO, the source distribution was computed after optimizing key physiological parameters to recover the measured mean concentration profile in a least‐square fashion. The proposed method was field‐tested using 1 year of 30‐min mean CO₂ concentration and CO₂ flux measurements collected within a 17‐year‐old (in 1999) even‐aged loblolly pine (Pinus taeda L.) stand in central North Carolina. Eddy‐covariance flux measurements conditioned on large friction velocity, leaf‐level porometry and forest‐floor respiration chamber measurements were used to assess the performance of the CSO model. The CSO approach produced reasonable estimates of ecosystem respiration, which permits estimation of ecosystem gross primary production when combined with daytime net ecosystem exchange (NEE) measurements. We employed the CSO approach in modelling annual respiration of above‐ground plant components (c. 214 g C m^?2 year^?1) and forest floor (c. 989 g C m^?2 year^?1) for estimating gross primary production (c. 1800 g C m^?2 year^?1) with a NEE of c. 605 g C m^?2 year^?1 for this pine forest ecosystem. We conclude that the CSO approach can utilise routine CO₂ concentration profile measurements to corroborate forest carbon balance estimates from eddy‐covariance NEE and chamber‐based component flux measurements.     

Productivity overshadows temperature in determining soil and ecosystem respiration across European forests

This paper presents CO₂ flux data from 18 forest ecosystems, studied in the European Union funded EUROFLUX project. Overall, mean annual gross primary productivity (GPP, the total amount of carbon (C) fixed during photosynthesis) of these forests was 1380 ± 330 gC m^?2 y^?1 (mean ±SD). On average, 80% of GPP was respired by autotrophs and heterotrophs and released back into the atmosphere (total ecosystem respiration, TER = 1100 ± 260 gC m^?2 y^?1). Mean annual soil respiration (SR) was 760 ± 340 gC m^?2 y^?1 (55% of GPP and 69% of TER). Among the investigated forests, large differences were observed in annual SR and TER that were not correlated with mean annual temperature. However, a significant correlation was observed between annual SR and TER and GPP among the relatively undisturbed forests. On the assumption that (i) root respiration is constrained by the allocation of photosynthates to the roots, which is coupled to productivity, and that (ii) the largest fraction of heterotrophic soil respiration originates from decomposition of young organic matter (leaves, fine roots), whose availability also depends on primary productivity, it is hypothesized that differences in SR among forests are likely to depend more on productivity than on temperature. At sites where soil disturbance has occurred (e.g. ploughing, drainage), soil espiration was a larger component of the ecosystem C budget and deviated from the relationship between annual SR (and TER) and GPP observed among the less‐disturbed forests. At one particular forest, carbon losses from the soil were so large, that in some years the site became a net source of carbon to the atmosphere. Excluding the disturbed sites from the present analysis reduced mean SR to 660 ± 290 gC m^?2 y^?1, representing 49% of GPP and 63% of TER in the relatively undisturbed forest ecosystems.     

Ecological studies on the timberline of Mt. Fuji

An ecological study of dry matter production was made in a dwarf forest dominated byAlnus maximowiczii at the timberline of Mt. Fuji. Annual gross production was estimated by two methods, namely the summation method using stem analysis and total photosynthesis calculated from leaf area and photosynthetic rate per leaf area. Seasonal changes in relative light intensity and in leaf area were measured in a quadrat. Photosynthesis and respiration rates of samples were measured in temperature-regulated assimilation chambers. The phytomass was 2,989 g d.w.m^?2, and those of stems and branches, leaves, and roots were 1,672 g, 293 g, and 1,024 g respectively. The growing period of this plant was about four months and this plant expanded leaves quickly. The maximum gross photosynthetic rate was 21 mg CO₂dm^?2 h^?1 on September 1. Annual net production estimated by examining the annual rings was 922 g d.w.m^?2 year^?1 and annual respiration was 735 g. Annual gross production estimated from photosynthetic rates was 1,747 g d.w.m^?2 year^?1. The sum of annual net production by stem analysis and respiration agree closely with gross production estimated from photosynthetic rate. Gross production of this dwarf forest is comparable to the beech forest of the upper cool temperate zone owing to the high photosynthetic rate ofAlnus maximowiczii.     

The interaction of components controlling net phytoplankton photosynthesis in a well-mixed lake (Lough Neagh, Northern Ireland)

The homogeneous distribution of the phytoplankton in a shallow (mean depth 8·6 m) unstratified lake, L. Neagh, Northern Ireland, facilitated the study of the interaction of components controlling gross photosynthesis per unit area. These included the photosynthetic capacity, the phytoplankton content of the euphotic zone, and a logarithmic function describing the effective radiation input. These factors were analysed for two sites, the open lake and Kinnego Bay, which respectively had standing crops of up to 90 and 300 mg chlorophyll a m^?3 and maximum daily rates of gross integral photosynthesis of 11·7 and 15·6 g O₂ m^?2 day^?1. Values are reduced by the high contribution to light attenuation by non-algal sources, which increases at low standing crops particularly in winter, when values of integral photosynthesis decrease to 0·5 g O₂ m^?2 day^?1. This relative change is the result of self-shading behaviour of the phytoplankton altering the crop content of the euphotic zone at different population densities. Changes in the irradiance function, incorporating day length, are largely responsible for the changes in daily rates of integral gross photosynthesis; as daily irradiance is also a determinant of water temperature, it exerts further influence through the photosynthetic capacity which was strongly correlated with temperature. Much of the gain in gross photosynthesis resulting from higher photosynthetic capacity may not be reflected in a higher net column photosynthesis, because of the greater proportional rise in respiration with temperature. The balance in the water column between respiration losses and photosynthetic input may frequently alter since the ratio of illuminated to dark zones is between 1/4 to 1/5 in the open lake, and small shifts in any of the controlling features may result in conditions unfavourable for growth. This is analysed especially for the increase of diatoms in spring, when small modifications of the underwater light field can delay growth.     

Carbon storage and fluxes in ponderosa pine forests at different developmental stages

We compared carbon storage and fluxes in young and old ponderosa pine stands in Oregon, including plant and soil storage, net primary productivity, respiration fluxes, eddy flux estimates of net ecosystem exchange (NEE), and Biome‐BGC simulations of fluxes. The young forest (Y site) was previously an old‐growth ponderosa pine forest that had been clearcut in 1978, and the old forest (O site), which has never been logged, consists of two primary age classes (50 and 250 years old). Total ecosystem carbon content (vegetation, detritus and soil) of the O forest was about twice that of the Y site (21 vs. 10 kg C m^?2 ground), and significantly more of the total is stored in living vegetation at the O site (61% vs. 15%). Ecosystem respiration (R_e) was higher at the O site (1014 vs. 835 g C m^?2 year^?1), and it was largely from soils at both sites (77% of R_e). The biological data show that above‐ground net primary productivity (ANPP), NPP and net ecosystem production (NEP) were greater at the O site than the Y site. Monte Carlo estimates of NEP show that the young site is a source of CO₂ to the atmosphere, and is significantly lower than NEP(O) by c. 100 g C m^?2 year^?1. Eddy covariance measurements also show that the O site was a stronger sink for CO₂ than the Y site. Across a 15‐km swath in the region, ANPP ranged from 76 g C m^?2 year^?1 at the Y site to 236 g C m^?2 year^?1 (overall mean 158 ± 14 g C m^?2 year^?1). The lowest ANPP values were for the youngest and oldest stands, but there was a large range of ANPP for mature stands. Carbon, water and nitrogen cycle simulations with the Biome‐BGC model suggest that disturbance type and frequency, time since disturbance, age‐dependent changes in below‐ground allocation, and increasing atmospheric concentration of CO₂ all exert significant control on the net ecosystem exchange of carbon at the two sites. Model estimates of major carbon flux components agree with budget‐based observations to within ± 20%, with larger differences for NEP and for several storage terms. Simulations showed the period of regrowth required to replace carbon lost during and after a stand‐replacing fire (O) or a clearcut (Y) to be between 50 and 100 years. In both cases, simulations showed a shift from net carbon source to net sink (on an annual basis) 10–20 years after disturbance. These results suggest that the net ecosystem production of young stands may be low because heterotrophic respiration, particularly from soils, is higher than the NPP of the regrowth. The amount of carbon stored in long‐term pools (biomass and soils) in addition to short‐term fluxes has important implications for management of forests in the Pacific North‐west for carbon sequestration.     

Linking Belowground Carbon Allocation to Anaerobic CH4 and CO2 Production in a Forested Peatland,New York State

Heterotrophic soil microorganisms rely on carbon (C) allocated belowground in plant production, but belowground C allocation (BCA) by plants is a poorly quantified part of ecosystem C cycling, especially, in peat soil. We applied a C balance approach to quantify BCA in a mixed conifer-red maple (Acer rubrum) forest on deep peat soil. Direct measurements of CH₄ and CO₂ fluxes across the soil surface (soil respiration), production of fine and small plant roots, and aboveground litterfall were used to estimate respiration by roots, by mycorrhizae and by free-living soil microorganisms. Measurements occurred in two consecutive years. Soil respiration rates averaged 1.2 bm μmol m^{? 2} s^{? 1} for CO₂ and 0.58 nmol m^{? 2} s^{? 1} for CH₄ (371 to 403 g C m^{? 2} year^{? 1}). Carbon in aboveground litter (144 g C m^{? 2} year^{? 1}) was 84% greater than C in root production (78 g C m^{? 2} year^{? 1}). Complementary in vitro assays located high rates of anaerobic microbial activity, including methanogenesis, in a dense layer of roots overlying the peat soil and in large-sized fragments within the peat matrix. Large-sized fragments were decomposing roots and aboveground leaf and twig litter, indicating that relatively fresh plant production supported most of the anaerobic microbial activity. Respiration by free-living soil microorganisms in deep peat accounted for, at most, 29 to 38 g C m^{? 2} year^{? 1}. These data emphasize the close coupling between plant production, ecosystem-level C cycling and soil microbial ecology, which BCA can help reveal.     

A simple calibrated model of Amazon rainforest productivity based on leaf biochemical properties

A simple ‘big leaf’ ecosystem gas exchange model was developed, using eddy covariance data collected at an undisturbed tropical rainforest in south-western Amazonia (Brazil). The model used mechanistic equations of canopy biochemistry combined with an empirical stomatal model describing responses to light, temperature and humidity. After calibration, the model was driven using hourly data from a weather station at the top of the tower at the measurement site, yielding an estimate of gross primary productivity (annual photosynthesis) in 1992/1993 of about 200 mol C m^?2 year ^?. Although incoming photon flux density emerged as the major control on photosynthesis in this forest, at a given PAR CO₂ assimilation rates were higher in the mornings than in the afternoons. This was attributable to stomatal closure in the afternoon in response to increasing canopy-to-air vapour pressure differences. Although most morning gas exchange was clearly limited by the rate of electron transport, afternoon gas exchange was generally observed to be very nearly co-limited by both Rubisco activity (V_max) and electron transport rate. The sensitivity of the model to changes in nitrogen allocation showed that the modelled ratio of V_max to electron transport (J_max) served nearly to maximize the annual carbon gain, and indeed, would have resulted in almost maximum annual carbon gain at the pre-industrial revolution atmospheric CO₂ concentration of 27 Pa. Modelled gross primary productivity (GPP) was somewhat lower at 27 Pa, being about 160 mol C m^?2 year^?1. The model suggests that, in the absence of any negative feedbacks on GPP, future higher concentrations of atmospheric CO₂ will continue to increase the GPP of this rainforest, up to about 230 mol C m^?2 year^?1 at 70 Pa.     

The significance of side-arm connectivity for carbon dynamics of the River Danube, Austria

1. Side‐arms connected to the main stem of the river are key areas for biogeochemical cycling in fluvial landscapes, exhibiting high rates of carbon processing. 2. This work focused on quantifying autochthonous and allochthonous carbon pools and, thereby, on comparing transport and transformation processes in a restored side‐arm system of the River Danube (Regelsbrunn). We established a carbon budget and quantified carbon processing from March to September 2003. In addition, data from previous studies during 1997 to 1999 were assessed. 3. Gross primary production (GPP) and community respiration were estimated by diel oxygen time curves and an oxygen mass balance. Plankton primary production was determined to estimate its contribution to GPP under different hydrological conditions. 4. Based on the degree of connectivity, three hydrological phases were differentiated. Most of the organic matter, dominated by allochthonous carbon, was transported in the main channel and through the side‐arm during floods, while at intermediate and low flows (and thus connectivity), transformation processes became more important and autochthonous carbon dominated the carbon pool. The side‐arm system functioned as a sink for particulate matter [total suspended solids and particulate organic carbon (POC)] and a source of dissolved organic carbon (DOC) and chlorophyll‐a. 5. Autochthonous primary production of 4.2 t C day^?1 in the side‐arm was equivalent to about 20% of the allochthonous inputs of 20 t C day^?1 (POC and DOC) entering the area at mean flow (1% of the discharge of the main channel). Pelagic photosynthesis was generally high at mean flow (1.3–3.8 g C m^?2 day^?1), and contributed up to 90% of system productivity. During long stagnant periods at low discharge, the side‐arm was controlled by biological processes and a shift from planktonic to benthic activity occurred (benthic primary production of 0.4–14 g C m^?2 day^?1). 6. The transformation of the organic matter that passes through the side‐arm under different hydrological conditions, points to the importance of these subsystems in contributing autochthonous carbon to the food web of the main channel.     

Diurnal variations in the carbon chemistry of two acidic peatland streams in north-east Scotland

1. Two acidic peatland upland streams in north‐east Scotland draining catchments of 1.3 and 41.4 km² were sampled each season for 2 years to investigate diurnal variations in dissolved and gaseous forms of carbon. Stream metabolism, alkalinity, discharge, pH, air and water temperatures were measured to aid data interpretation. 2. Free CO₂ showed marked diurnal variation with lowest concentrations during the period from late morning to early afternoon and highest during the hours of darkness. Although alkalinity and pH also showed some diurnal fluctuations, in comparison with other more productive alkaline systems, variation was small. Dissolved organic carbon (DOC) showed no significant diurnal pattern. However, significant changes in stream discharge influenced DOC concentrations, as well as over‐riding diurnal patterns of free CO₂, alkalinity and pH. 3. The highest diurnal ratios (maximum concentration/minimum concentration) in CO₂, gross primary productivity (GPP) and community respiration (CR) occurred in spring and summer and the lowest in autumn and winter. Variation in biotic in‐stream processes caused changes in CO₂ concentrations and temperature affected both the solubility of CO₂ and changes in up‐stream CO₂ inputs. There was no significant difference in diurnal fluctuations between the two orders of stream studied. 4. The mean GPP (as CO₂) was 0.81 g CO₂ m^?2 day^?1 and mean CR 2.67 g CO₂ m^?2 day^?1. The mean primary production/respiration (P/R) ratio was 0.26 ± 0.09 and 0.33 ± 0.15 in the first and second order streams, respectively. These values are low compared with published data because these heterotrophic headwater streams are dominated by benthic respiration and upstream allochthonous inputs with little autotrophic metabolism, particularly during the colder autumn and winter months. 5. The results have implications for the calculation of dissolved inorganic carbon (DIC) fluxes in streamwater. Samples taken during daylight hours tend to have lower concentrations of free CO₂ and HCO₃^? than samples taken during darkness. During spring, concentrations of free CO₂ were measured up to 2.4 (annual mean 1.8) times higher at night than during the day at a similar discharge. It is suggested that fluxes based on daytime measurements alone will under‐estimate the annual flux of these determinands in streamwater by as much as 40%.     

High rates of net primary production and turnover of floating grasses on the Amazon floodplain: implications for aquatic respiration and regional CO2 flux

We investigated whether rates of net primary production (NPP) and biomass turnover of floating grasses in a central Amazon floodplain lake (Lake Calado) are consistent with published evidence that CO₂ emissions from Amazon rivers and floodplains are largely supplied by carbon from C4 plants. Ground‐based measurements of species composition, plant growth rates, plant densities, and areal biomass were combined with low altitude videography to estimate community NPP and compare expected versus observed biomass at monthly intervals during the aquatic growth phase (January–August). Principal species at the site were Oryza perennis (a C3 grass), Echinochloa polystachya, and Paspalum repens (both C4 grasses). Monthly mean daily NPP of the mixed species community varied from 50 to 96 g dry mass m^?2 day^?1, with a seasonal average (±1SD) of 64±12 g dry mass m^?2 day^?1. Mean daily NPP (±1SE) for P. repens and E. polystachya was 77±3 and 34±2 g dry mass m^?2 day^?1, respectively. Monthly loss rates of combined above‐ and below‐water biomass ranged from 31% to 75%, and averaged 49%. Organic carbon losses from aquatic grasses ranged from 30 to 34 g C m^?2 day^?1 from February to August. A regional extrapolation indicated that respiration of this carbon potentially accounts for about half (46%) of annual CO₂ emissions from surface waters in the central Amazon, or about 44% of gaseous carbon emissions, if methane flux is included.     

Seasonal and annual variation of carbon exchange in an evergreen Mediterranean forest in southern France

We present 9 years of eddy covariance measurements made over an evergreen Mediterranean forest in southern France. The goal of this study was to quantify the different components of the carbon (C) cycle, gross primary production (GPP) and ecosystem respiration (R_eco), and to assess the effects of climatic variables on these fluxes and on the net ecosystem exchange of carbon dioxide. The Puéchabon forest acted as a net C sink of ?254 g C m^?2 yr^?1, with a GPP of 1275 g C m^?2 yr^?1 and a R_eco of 1021 g C m^?2 yr^?1. On average, 83% of the net annual C sink occurred between March and June. The effects of exceptional events such the insect‐induced partial canopy defoliation that occurred in spring 2005, and the spring droughts of 2005 and 2006 are discussed. A high interannual variability of ecosystem C fluxes during summer and autumn was observed but the resulting effect on the annual net C budget was moderate. Increased severity and/or duration of summer drought under climate change do not appear to have the potential to negatively impact the average C budget of this ecosystem. On the contrary, factors affecting ecosystem functioning (drought and/or defoliation) during March–June period may reduce dramatically the annual C balance of evergreen Mediterranean forests.     

Partitioning of ecosystem respiration of CO2 released during land‐use transition from temperate agricultural grassland to Miscanthus × giganteus

Conversion of large areas of agricultural grassland is inevitable if European and UK domestic production of biomass is to play a significant role in meeting demand. Understanding the impact of these land‐use changes on soil carbon cycling and stocks depends on accurate predictions from well‐parameterized models. Key considerations are cultivation disturbance and the effect of autotrophic root input stimulation on soil carbon decomposition under novel biomass crops. This study presents partitioned parameters from the conversion of semi‐improved grassland to Miscanthus bioenergy production and compares the contribution of autotrophic and heterotrophic respiration to overall ecosystem respiration of CO₂ in the first and second years of establishment. Repeated measures of respiration from within and without root exclusion collars were used to produce time‐series model integrations separating live root inputs from decomposition of grass residues ploughed in with cultivation of the new crop. These parameters were then compared to total ecosystem respiration derived from eddy covariance sensors. Average soil surface respiration was 13.4% higher in the second growing season, increasing from 2.9 to 3.29 g CO₂‐C m^?2 day^?1. Total ecosystem respiration followed a similar trend, increasing from 4.07 to 5.4 g CO₂‐C m^?2 day^?1. Heterotrophic respiration from the root exclusion collars was 32.2% lower in the second growing season at 1.20 g CO₂‐C m^?2 day^?1 compared to the previous year at 1.77 g CO₂‐C m^?2 day^?1. Of the total respiration flux over the two‐year time period, aboveground autotrophic respiration plus litter decomposition contributed 38.46% to total ecosystem respiration while belowground autotrophic respiration and stimulation by live root inputs contributed 46.44% to soil surface respiration. This figure is notably higher than mean figures for nonforest soils derived from the literature and demonstrates the importance of crop‐specific parameterization of respiration models.