Heavy Metal Accumulation in Four Species of Sea Turtles from the Baja California Peninsula, Mexico

Heavy metals were assessed in four species of sea turtles from the Baja California Peninsula, Mexico, representing the first report of heavy metal concentrations in tissues of post-yearling sea turtles from the Eastern Pacific. Concentrations of Cd measured in C. mydas kidney (653 μg/g dry wt) were the highest ever reported for any sea turtle species. Cd accumulated preferentially in kidney and the ratios of kidney to liver Cd in Baja California turtles were among the highest reported for sea turtles globally. Zn, Ni, and Mn concentrations were also significantly higher in kidney than other tissues, while Cu and Fe were greatest in liver, and all metals were lowest in muscle. With the exception of one value (69.9 μg/g in kidney of C. caretta), Pb was low in all tissues from Baja California. In comparisons across species, kidney of C. mydas had greater Zn and Ni concentrations as compared to other species, although there was no difference in liver metal levels among the species. Positive correlations were detected in the concentrations of Cd, Cu and Ni with the straight carapace length of C. caretta.     

Natural disturbance and treefalls in a pine-oak forest on the Peninsula of Baja California,Mexico

The magnitude of natural disturbances by treefalls and their spatial occurrence were studied in a pine-oak forest of Sierra de La Laguna, located at the southern part of the Peninsula of Baja California in Mexico.Twenty transects covering 4 ha, perpendicular to north- and south-facing slopes were sampled. The percentages of rocky outcrops, slope, orientation, and gap size created by treefalls were recorded. The mode of tree death, treefall direction, trunk length, and basal diameter were also measured. Data were analyzed using principal component analysis, one-way ANOVA, multiple comparison tests by contrasts, and chi-square independence tests.Results suggest that exogenous disturbances have an important effect in this community. A mean number of 80 gaps per ha was recorded comprising 18.1% of the observed area. Gap sizes were fitted to a lognormal distribution as 2.3±1.4 and patches were found to be created by single treefalls. Analysis of dead material shows that there are significant differences between numbers of fallen trees on N vs S facing slopes, and that forms of dead trees are significantly associated with species. Snapped trees represent 39.5% of treefalls, dead standing trees 26.4%, uprooted trees 20.5% and cut-down trees 0.9%. The frequency of occurrence of various forms of the dead trees suggests that the cause of mortality is primarily due to the high incidence of tropical hurricanes, and secondly to the combined effect of wind and natural fire which occurs during the rainy summer season.     

Uranium-series ages of marine terraces,La Paz Peninsula,Baja California Sur,Mexico

Uranium-series dating of coral samples from raised marine terrace deposits between 1.5 and 10 m above sea level in the La Paz Peninsula area, Baja California Sur, yielded ages between 123 ka and 138 ka that are in agreement with previously reported results. The stratigraphy and ages of marine units near the El Coyote Arroyo indicate the presence of two high stands of the sea during the last interglacial or oxygen isotope substage 5e at about 140 ka and 123 ka. Accepting 5 m for the sea level during the last interglacial transgression, we calculate average uplift rates for the marine terraces of about 70 mm/ka and 40 mm/ka. These slow rates of uplift indicate a relative stability of the La Paz peninsula area for the past 140 000 years. In contrast, areas of Baja California affected by major faultf experienced higher rates of uplift. Rockwell et al. (1987) reported vertical uplift rates of 180 to 300 mm/ka at Punta Banda within the Aqua Blanea fault zone in northern Baja California.     

The coastal salt marshes of California and Baja California

A comparative study of the North American salt marshes between Magdalena Plain (Baja California, 24° N)_and the north of San Francisco (California 38° N) is made in order to establish relationships between floristic and zonal gradients. The sigmatistic-phytosociological method along with Average Linkage Clustering are used to describe the zonation of these salt marshes and to define the optimum zone of several halophilous plants and communities.Abbreviations (As) Arthrocnemum subterminalis - (Ds) Distichlis spicata - (Fg) Frankenia salina - (Jc) Jaumea carnosa - (MI) Monanthochloe littoralis - (S1) Sarcocornia pacifica, prostrate biotype - (S2) Sarcocornia pacifica, erect biotype - (Sp) Spartina foliosa     

Dry vegetation in relation to the physical environment in the Baja California Peninsula,Mexico

Abstract. An ordination analysis of vegetation and flora of Los Cabos Region, Baja California Peninsula, Mexico and its relationships with their environment and geomorphic characteristics was studied at 38 sites, selected based on ecoregion mapping units (EMU) previously delineated for the study area. Multivariate methods were used to analyse the relationship between physical characteristics of the environment and the two primary vegetation types, the Dry tropical forest (DTF) and the Xerophilous scrubland (XS), which together represent 83% of the vegetation cover in the study area. Sites were grouped based on both physical characteristics and relative abundance of plant species. The results of the statistical analysis suggest that altitude, rainfall, temperature, and lithology can help explaining differences between these important vegetation types. In the case of XS, the morpho‐physiognomic characteristics of vegetation in each site discriminated between two scrub types.     

Mid-eocene climatic change,Southwestern California and Northwestern Baja California

A widespread paleosol of Paleocene and Early Eocene age occurs in southwestern California and northwestern Baja California. The dominant quartz-kaolinite mineralogy and cation-depleted chemistry of the buried soil indicate a humid, tropical paleoclimate similar to the modern equatorial belt. Although the Paleocene—Eocene paleomagnetic latitudes are similar to the modern latitudes (36–37°N to 32–33°N, respectively), rainfall was about 125–190 cm per year and average annual temperature was about 20–25°C in marked contrast to the present annual rainfall of 25 cm and average annual temperature of 16°C.A variety of indicators in the Late Eocene sedimentary succession suggests a change to a semi-arid paleoclimate. The nonmarine portions of the Late Eocene sedimentary record are dominated by a cobble conglomerate lithosome deposited in fluvial, alluvial fan and fan delta systems. Intertongued with the conglomerate is a sandstone lithosome deposited in flood-plain and nearshore marine environments. The conglomerate clasts were transported to the depositional site via a long-distance (200–300 km), moderate gradient, braided river system mostly by flash floods. Characteristic post-depositional, in situ fracturing of conglomerate clasts probably occurred due to salt crystallization.Within the flood plain sandstones, and to a lesser degree the conglomerates, are multiple well-developed caliche horizons of probable pedogenic origin. Clay minerals from the Late Eocene rocks are dominantly vermiculite and smectite with lesser chlorite and illite; this is in marked contrast to the kaolinite that comprises the underlying Early Paleogene lateritic paleosol.The character of the Late Eocene sedimentary succession indicates a semi-arid climate. Rainfall probably did not exceed 63 cm per year; it probably was seasonal and by occasional flash floods. This paleoclimate contrasts markedly with the earlier humid tropical paleoclimate and must indicate a widespread climatic change in late Middle Eocene time.     

Deep-water bivalves from the oxygen minimum zone area off the western Peninsula of Baja California,Mexico

ABSTRACT

Eighteen species of deep-sea bivalves were collected below the Oxygen Minimum Zone (OMZ) core off western Mexico. This material was obtained during the research cruises XVI, XVIB (off the northwestern Peninsula of Baja California), and VIII (Gulf of California) of the TALUD project aboard the R/V El Puma. The samples were taken with an epibenthic sledge (710–2077?m deep) and with a box corer (750–2600?m). The species belong to 10 families: Solemyidae, Nuculanidae, Malletiidae, Tindariidae, Limopsidae, Propeamussiidae, Tellinidae, Periplomatidae, Poromyidae and Lyonsiellidae. Environmental parameters (oxygen, salinity, sediments composition and temperature) are given for each sampling station. Tolerance to oxygen depletion is analysed for all deep-water species collected by the TALUD survey off the Baja California Peninsula. The additional file includes shell characteristics and distributional information for each species.     

Characterization of nine microsatellite loci on endemic kangaroo rats Dipodomys simulans peninsularis from southern Baja California Peninsula

Nine polymorphic microsatellite loci were isolated to investigate the effects of habitat fragmentation on gene flow and genetic variation of the peninsular kangaroo rat Dipodomys simulans peninsularis on agricultural landscape from the Baja California Peninsula. The markers had an average of 9.11 alleles per locus (range 2–14), with mean observed and expected heterozygosities 0.646 (range 0.333–0.900) and 0.788 (range 0.284–0.932), respectively. No evidence of linkage disequilibrium was found across pairs of loci, and only one locus exhibited evidence of null alleles.     

Seasonal and interannual variation of sterols in macrophytes from the Pacific coast of Baja California Peninsula (Mexico)

The seasonal and interannual proximate and sterol composition were assessed in two red (Gelidium robustum, Gelidiaceae and Gracilariopsis sjoestedtii, Gracilariaceae), two brown (Ecklonia arborea, Lessoniaceae and Macrocystis pyrifera, Laminariaceae), and two green (Ulva lactuca and Ulva clathrata, Ulvaceae) macroalgae species and the seagrass Phyllospadix torreyi (Zosteraceae) sampled over 3 years in a subtropical climate in Baja California Sur, Mexico. Each macroalga had a particular sterol composition that was typical of their taxonomic group. The red algae had cholesterol as the major sterol; 92% on average in G. robustum and 90% in G. sjoestedtii, followed by t‐dehydrosterol and brassicasterol. In the brown algae the major sterol was fucosterol, which accounted for approx. 90% and 92% of total sterols for M. pyrifera and E. arborea, respectively, followed by campesterol (7% and 5%) and isofucosterol (1.5% and 1.3%). The green algae had isofucosterol as the major sterol, with 92% on average for U. lactuca and 87% for U. clathrata, followed by cholesterol, fucosterol, and brassicasterol or norcholesterol. The seagrass P. torreyi had β‐sitosterol as the major sterol (39 to 89%, depending on the season), followed by campesterol (4 to 7%), stigmasterol (3 to 6%), and isofucosterol (1.7 to 3.5%). Four (cholesterol, campesterol, fucosterol, and isofucosterol) of the 14 sterols identified in macroalgae and the seagrass could be used to differentiate between classes (Florideophyceae – red, Phaeophyceae – brown, Ulvophyceae – green, and Monocots – seagrass) both seasonally and interannually. The seasonal and interannual sterol composition of macroalgae and seagrass was quite stable, with the exception of red G. sjoestedtii sampled in August and green macroalga U. lactuca and seagrass P. torreyi both sampled in May 2002. Seasonal and interannual variations of proximate and sterol composition are discussed in relation to their reproductive state and environmental parameters.     

Cyanobacterial Microbiotic Crusts in Eroded Soils of a Tropical Dry Forest in the Baja California Peninsula,Mexico

This study deals with the cyanobacterial composition, and the nitrogen fixation of four members, of cryptobiotic crusts collected from eroded soils in a transitional area between arid and tropical climatic environments. Identification was based on microscopic analyses. Morphotypes were identified directly from reactivated natural crusts and from cultured strains. The identified morphotypes were Scytonema cf. ocellatum, Scytonema sp., Microcoleus cf. paludosus, M. cf. sociatus, Calothrix cf. elenkinii, C. cf. marchica, Nostoc cf. microscopicum, and Phormidium sp. Results show that the cyanobacterial composition of the microbiotic crusts studied is different from those in warmer and cooler deserts, particularly the absence of Microcoleus cf. vaginatus and Nostoc cf. commune in our samples. Such differences could be caused by the transitional character of the area. The results of the acetylene reduction assay show that the capacity of nitrogen fixation of some morphotypes is limited to the heterocyst-forming morphotypes.     

Louse flies on birds of Baja California

Louse flies were collected from 401 birds of 32 species captured in autumn of 1996 in Baja California Sur (Mexico). Only one louse fly species (Microlynchia pusilla) was found. It occurred in four of the 164 common ground doves (Columbina passerina) collected. This is a new a host species for this louse fly.     

Polymorphic microsatellite loci for the sand pocket mouse Chaetodipus arenarius, an endemic from the Baja California Peninsula

Fifteen polymorphic microsatellite loci were isolated from an enriched genomic library of the sand pocket mouse Chaetodipus arenarius. The mean number of alleles per locus was 11.53 (range five to 19) and the average observed heterozygosity was 0.764 (range 0.121 to 1.0). The markers will be used for detecting the impact of human-induced habitat fragmentation on patterns of gene flow, genetic structure, and extinction risk. In addition, these markers will be useful across the genus because most of the loci cross-amplified and were polymorphic in three other species of Chaetodipus.     

Regionalization of the avifauna of the Baja California Peninsula, Mexico: a parsimony analysis of endemicity and distributional modelling approach

Aim To analyse the distributional patterns of the Baja California Peninsula's resident avifauna, and to generate a regionalization based on a method that uses a parsimony analysis (parsimony analysis of endemicity, PAE) of point data and modelled potential distributions. Location The Baja California Peninsula, Mexico. Methods A data base was constructed containing records of 113 species of resident terrestrial birds present in the Baja California Peninsula. Records and localities were obtained from the literature and from specimens housed in scientific collections world‐wide. Raw data points and potential distribution maps obtained using the software Genetic Algorithms for Rule‐set Prediction (GARP), were analysed with PAE. Results The data base consisted of 4164 unique records (only one combination of species/locality) belonging to 113 terrestrial resident bird species, in a total of 809 localities. From the point distribution matrix, the analysis generated 500 equally parsimonious trees, from which a strict consensus cladogram with 967 steps was obtained. The cladogram shows a basal polytomy and some geographical correspondence of a few resolved groups obtained in the analysis. These results do not allow the recognition of areas defined by avifaunistic associations. From the potential distribution matrix, the analysis generated 501 equally parsimonious trees, and a strict consensus cladogram of 516 steps was obtained. The cladogram shows a higher resolution because of the number of resolved groups with better geographical correspondence and therefore regions are well‐defined. Main conclusions The correspondence of some groupings of species suggest their validity as areas with biogeographical (historical and/or ecological) meaning. This regionalization in the Baja California avifauna seems to be consistent with previous regionalizations for other groups. Hence, PAE is a useful tool for area categorization if reliable point records and prediction tools are available. Our results suggest that the geographical definition is much better using potential data generated by GARP, particularly when they are contrasted with the results from point data. Thus, this is an excellent alternative for developing biogeographical studies, as well as for improving the use of data from scientific collections and other sources of biodiversity information.     

Deep genealogies and the mid-peninsular seaway of Baja California

Geological forces and long-term climate changes can have profound effects on species. Such effects may be manifested in the pattern and magnitude of genealogical diversity, as revealed by mitochondrial DNA (mtDNA) lineages. The relative importance of the different forces on a regional biota must be evaluated along with a good understanding of geological and climatological history. The peninsula of Baja California of north-western Mexico is one area where both geology and climate have affected the historical biogeography of the regional biota. Molecular studies based on the genealogical relationships among mtDNA lineages have contributed greatly towards elucidating the historical biogeography of Baja California. Perhaps most noticeably, numerous concordant breaks in mtDNA genealogies half-way along the peninsula suggest a vicariant history in which the mid-peninsula was temporarily submerged. This vicariant explanation has recently been criticized, as no conclusive geological evidence exists for a continuous submergence of the mid-peninsula. As an alternative, a scenario based on climatological factors has been suggested. Here we discuss the validity of the hypothesized mid-peninsular vicariance event and the climate-based alternative in explaining the concordant genealogical breaks. We argue that, despite the significant changes in climate brought about by the glacial cycles throughout the Quaternary, a vicariant history involving a mid-peninsular seaway remains the most parsimonious explanation of the observed patterns in mtDNA genealogies.     

Phylogenetic structure among pocket gopher populations,genus Thomomys (Rodentia: Geomyidae), on the Baja California Peninsula

We determined the phylogenetic relationships, population history, and hierarchical structure of genetic variation in pocket gophers distributed on the Baja California Peninsula (BCP), based on extensive geographic sampling. Using a fragment of the mitochondrial gene cytochrome b (cyt b), we found three latitudinal structured geographic clades (northern, central, and southern). The northern clade occurs in the border area of the USA and the north of BCP, the central clade occurs from the peninsular highlands through the Central Desert of Baja California, and the southern clade is distributed south of the San Ignacio Lagoon. AMOVA showed that genetic variation is higher among clades (64%) than within populations (18.1%). The deepest divergence among clades is very shallow (～300 000 years), which suggests that climatic changes during the Pleistocene or some inhospitable habitats have affected the structure of this group, rather than influences from older marine transgressions. Phylogenetic groups disclosed by our results do not coincide with the current infraspecific classification; therefore, we propose a change of epithet for BCP gophers (Thomomys nigricans) and a new subspecific taxonomic arrangement with four subspecies: Thomomys nigricans anitae, Thomomys nigricans martirensis, Thomomys nigricans nigricans, and Thomomys nigricans russeolus. © 2013 The Linnean Society of London     

Molecular genetic analysis of two native desert palm genera,Washingtonia and Brahea,from the Baja California Peninsula and Guadalupe Island

The complex geological and ecological processes that have generated high levels of biodiversity and endemism in the Baja California Peninsula have been the subject of intensive study. However, relatively little is known about phylogeography of the iconic endemic palm species of this region. We therefore analyzed a total of 2,294 bp of chloroplast and 738 bp of nuclear sequence data in 169 samples of five native palm species from Baja California, Sonora and Guadalupe Island. We found that Washingtonia and Brahea palms had low levels of genetic diversity and were highly structured, with the majority of species and major geographic regions being characterized by distinct haplotypes. We also found strong support for currently recognized species in Washingtonia, but our results were less clear cut for Brahea due to haplotype sharing. Furthermore, patterns of population structure were broadly consistent with historical vicariant events such as the inundation of the Isthmus of La Paz, the formation of the Sea of Cortez, and the more recent colonization and isolation of Guadalupe Island's palms. Our findings contribute toward a growing appreciation of the complexity of plant responses to past geological changes and also provide valuable baseline genetic data on relict American palm species.