Climate change hastens the turnover of stream fish assemblages

Stream fish are expected to be significantly influenced by climate change, as they are ectothermic animals whose dispersal is limited within hydrographic networks. Nonetheless, they are also controlled by other physical factors that may prevent them moving to new thermally suitable sites. Using presence–absence records in 655 sites widespread throughout nine French river units, we predicted the potential future distribution of 30 common stream fish species facing temperature warming and change in precipitation regime. We also assessed the potential impacts on fish assemblages' structure and diversity. Only cold-water species, whose diversity is very low in French streams, were predicted to experience a strong reduction in the number of suitable sites. In contrast, most cool-water and warm-water fish species were projected to colonize many newly suitable sites. Considering that cold headwater streams are the most numerous on the Earth's surface, our results suggested that headwater species would undergo a deleterious effect of climate change, whereas downstream species would expand their range by migrating to sites located in intermediate streams or upstream. As a result, local species richness was forecasted to increase greatly and high turnover rates indicated future fundamental changes in assemblages' structure. Changes in assemblage composition were also positively related to the intensity of warming. Overall, these results (1) stressed the importance of accounting for both climatic and topographic factors when assessing the future distribution of riverine fish species and (2) may be viewed as a first estimation of climate change impacts on European freshwater fish assemblages.     

Predicting the structure and diversity of young-of-the-year fish assemblages in large rivers

1. Interactions between environmental variables and 0+ fish assemblages in the upper River Garonne (France) were quantified during late August 1995.
2. The abundance and diversity of the fish assemblages in floodplain channels were modelled using Artificial Neural Network (ANN) analysis and nine variables: the abundance of the six dominant species, fish specific richness, overall abundance of 0+ fish and the Shannon index of diversity. Multiple regression analysis was also used to assess ANN performance.
3. Using 596 samples, correlation coefficients ( r adjusted) between observed and estimated values of the nine dependent parameters were all highly significant ( P < 0.01). Expected values from the tested data were significantly related to the observed values. The correlation coefficient between observed and estimated values ( r ) varied from 0.70 to 0.85.
4. The ANN provided a high quality prediction, despite the complex nature of the relationship between microhabitat composition and fish abundance.
5. Garson's algorithm was used to provide the explanatory power needed in ecology when using black-box models. Parameters contained in the models (i.e. weighting) were used to determine the relative contributions of explanatory variables and thus to ascertain the structure of fish communities.     

Spatial and Temporal variations of mangrove fish assemblages in Martinique (French West Indies)

A study of the mangrove fish fauna in a bay of Martinique Island (French West Indies) was carried out at different seasons during two consecutive years. fishes were sampled with specific hoop-nets in the coastal areas at 8 stations.A total of 87 species was collected in the bay. Most individuals were represented by small-size specimens and juveniles. The overall species richness varied according to the stations and the sampling periods. The biomass and number of individuals were variable according to the location but remained stable in time. A factor correspondence analysis and a hierarchical clustering with median links were used to follow the evolution of the stations in space and time. Two types of stations were differentiated: the stations characterized by the mangrove and those under the influence of seagrass beds. A seasonal cycle, opposing the dry periods to the others, was observed.Thus, it seems that the use of the mangrove habitat by the fishes is optimized through a complete reorganization of communities in terms of species composition whereas the overall number and biomass remain stable. This model remains valid even for the most constraining biota of the mangrove ecosystem inhabited by a small number of well adapted species.     

Ecological integrity assessment of the fish assemblages of the Matigulu/Nyoni and Umvoti estuaries,KwaZulu-Natal,South Africa

The estuarine fish community index (EFCI) and an estuarine fish guild assessment (EFGA) were used in 2004 and 2008 to determine the ecological state and effects of selected ecosystem variables on the Umvoti and Matigulu/Nyoni estuaries. The EFCI indicated that the Matigulu/Nyoni Estuary was in a moderate state and that the Umvoti Estuary was in a poor to very poor state. The EFGA revealed a clear spatial differentiation, based on the estuaries’ fish community structures, that was being driven primarily by the freshwater-dominated state of the Umvoti Estuary and the poor water quality of the Umvoti Estuary. The analysis of estuarine fish assemblage characteristics was shown to contribute towards the management and conservation of these systems.     

Changes in the composition of British butterfly assemblages over two decades

Changes in the abundance and distribution of individual species have been widely documented in Britain and other countries in recent decades, but little has been done to determine changes in community composition over broad geographic areas. Here, we studied species turnover in 51 butterfly assemblages in Britain since 1976, examining extinction and colonisation events together with variation in the abundances of the species. We showed that the species turnover that occurred over 20 years in Britain was associated with colonisation and extinction events and also with variability in the abundance of the species. These changes in community composition differed according to the habitat requirements of the species and their previous distributions, being more evident for habitat specialists and for southerly distributed species. Colonising species often became abundant components of the communities they joined, although this was more evident for generalist than for specialist species. The abundance of species following their arrival, increased with time since colonisation. Species turnover associated with southerly species expanding northwards is consistent with being a response to climate change. The results suggest that climate- and habitat-driven changes in the identity and abundance of species within communities are widespread, and probably ubiquitous. Similar changes are likely to be occurring in other groups of organisms that are similarly undertaking major range shifts associated with climate change.     

Woodland area,species turnover and the conservation of bird assemblages in lowland England

A study over 4 years into the number of breeding bird species and species turnover (extinctions and colonisations) in relation to area was conducted in 35 woodlands, set in an intensively farmed landscape, in north-east Essex, UK. A total of 46 species was recorded. The number of species breeding increased with woodland area; the slope of the species–area relationship did not differ between years. Habitat diversity was the only other measured variable to influence species richness. Absolute species turnover was independent of woodland area but relative turnover declined with increase in woodland area. The numbers of territories of nine species were determined. For four summer visitors the number of woods occupied increased as the overall populations increased but, for the other species, changes in overall population size led to changes in numbers in occupied woods. Chaffinch Fringilla coelebs and Song Thrush Turdus philomelos were more associated with woodland edges, Nightingale Luscinia megarhynchos, Garden Warbler Sylvia borin, Chiffchaff Phylloscopus collybita and Willow Warbler P. trochilus with interiors. Several species showed an inverse relationship between population density and woodland area. Collections of small woods hold similar species richness to single large woods. While the acquisition of large woods for conservation purposes should be a priority, the extension of smaller woods to a size of about 10 ha would be highly beneficial to both the species richness and population stability of regional woodland bird assemblages.     

Signature of ecological partitioning in the maintenance of damselfly diversity

1.?Ecological differences among co-occurring taxa are often invoked as an explanation for the maintenance of biodiversity. Whether these differences facilitate coexistence, which allows unequal competitors to remain in systems and thus maintain biodiversity, is still unclear. 2.?Here, we used observational and experimental studies to test for ecological partitioning in ways that would promote coexistence among three co-occurring damselfly genera. We evaluated two necessary conditions for coexistence: (i) that the damselfly genera differ in their abilities to engage in interactions with other damselfly genera and environmental conditions such that their relative abundances covary differently along environmental gradients and (ii) that an increase in intrageneric abundance is more detrimental to performance-related demographic features of each genus than increases in intergeneric abundances. 3.?Observational studies across 40 lakes showed that relative abundances of each genus covaried differently along an environmental gradient of lake abiotic and biotic features consistent with ecological partitioning. Field experiments in which we manipulated both intra- and intergeneric densities demonstrated that per capita growth rates of each genus are negatively density-dependent and are only limited by increases in intra- not intergeneric densities. 4.?Collectively, these results show a clear signature of ecological partitioning among each genus, which should prevent competitive exclusion and maintain each genus in this system. The results do not guarantee local coexistence among the three genera but are consistent with criteria that should promote their coexistence. Our results also suggest that a food web model coupling keystone predation and apparent competition is likely necessary to explain the ecological dynamics of persistence among these genera.     

Temporal variability in fish assemblages from disturbed and undisturbed streams

Fish assemblages were sampled by electrofishingover a two- to ten-year period in undisturbedand anthropogenically disturbed South Carolinacoastal plain streams. Jaccard similarity,Bray–Curtis similarity, and Spearman rankcorrelations among samples collected from thesame sites over time were significantly greaterat undisturbed sites than at disturbed sites,suggesting greater fish assemblage persistenceand stability at the undisturbed sites. TheIndex of Biotic Integrity (IBI) also exhibitedsignificantly less variation over time atundisturbed sites than at disturbed sites.Physical habitat structure changed more overtime at disturbed sites than at undisturbedsites, and this variability was directlyrelated to temporal variability in fishassemblage structure. Comparisons betweenmultiple and single pass electrofishing samplessuggested that only a small proportion of thetemporal variability observed at the studysites was caused by inefficient sampling.Assessment of temporal variation in fishassemblage structure can serve as an indicatorof environmental disturbance and facilitate thedistinction of substantive ecological changefrom normal background variation.     

太湖鱼类群落结构及多样性

为了解太湖鱼类群落结构和多样性的分布特征,于2009-2010年利用拖网等网具对该水域的鱼类资源进行了调查.结果表明:本次调查共采获鱼类50种,隶属10目15科40属,其中鲤形目种类最多,占总数的68％;鱼类生态类型以湖泊定居性种类为主,群落优势种为湖鲚(Coilia ectenes taihuensis)、间下鱵(Hyporhamphus intermedius)和陈氏短吻银鱼(Salangichthys jordani)等小型鱼类;与历史资料相比,太湖鱼类的物种数量下降,优势种组成发生较大变化,鱼类群落中体质量＜30 g的小型鱼类占绝对优势,渔业资源小型化趋势明显.由于过度捕捞和湖泊环境恶化,鱼类群落生物多样性指数均表现偏低,物种丰富度指数D为1.54,多样性指数H’N、H’w分别为0.21和0.46,均匀度指数J'N、.J'w分别为0.07和0.14;太湖各湖区间鱼类种群和多样性的差别一定程度上反映出鱼类群落结构与湖泊营养盐、透明度等环境特征相适应的特点.     

Lake depth and geographical position modify lake fish assemblages of the European 'Central Plains' ecoregion

1. Classification of European lake fish assemblages can be based on fish‐assemblage structure or morphological, geographical, physical and chemical lake attributes. However, substantial gaps in knowledge exist with respect to the correspondence between both classification approaches. 2. Here, we compiled fish assemblage data from 165 lakes situated in the European ‘Central Plains’ ecoregion. Cluster analysis of fish abundances was performed to compare fish assemblage types of the entire ecoregion with those from previous country‐specific studies. Nonparametric group comparisons, classification trees and partial canonical ordinations were used to infer the correspondence between fish assemblage types and morphology, geographical position and nutrient concentration of the lakes. 3. Three distinct fish assemblages were revealed: vendace (Coregonus albula), ruffe (Gymnocephalus cernuus) and roach (Rutilus rutilus) lake types. Both latitude and lake depth were the best determinants of lake type, but total phosphorus (TP) concentrations were also important. Vendace lakes were deep and had low TP concentrations, whereas the shallower ruffe and roach lakes had higher TP values. Roach lakes were more frequent in the north‐west area of the ecoregion, whereas ruffe lakes were more often found south of the Baltic Sea. 4. Controlling for the influence of nutrient concentration showed that lake morphology and geographical position were important determinants of fish assemblages. However, the variance explained was low (<20%), implying that biological interactions may also be important in forming the lake‐specific fish assemblages. 5. The results suggest that fish assemblages differ between deep and shallow lakes, and between the north‐west and south‐east locations within the Central Plains ecoregion. Accordingly, establishment of depth‐related lake morphotypes is needed, and the European ecoregions recommended to be used in evaluation systems according to the Water Framework Directive seem to be too coarse to reflect the subtle differences of fish species richness along geographical gradients.     

Positive relationships between genetic diversity and abundance in fishes

Molecular markers, such as mitochondrial DNA and microsatellite loci, are widely studied to assess population genetics and phylogeography; however, the selective neutrality of these markers is increasingly being questioned. Given the importance of molecular markers in fisheries science and conservation, we evaluated the neutrality of both mtDNA and microsatellite loci through their associations with population size. We surveyed mtDNA and microsatellite data from the primary literature and determined whether genetic diversity increased with abundance across a total of 105 marine and freshwater fishes, with both global fisheries catch data and body size as proxies for abundance (with an additional 57 species for which only body size data were assessed). We found that microsatellite data generally yielded higher associations with abundance than mtDNA data, and within mtDNA analyses, number of haplotypes and haplotype diversity were more strongly associated with abundance than nucleotide diversity, particularly for freshwater fishes. We compared genetic diversity between freshwater and marine fishes and found that marine fishes had higher values of all measures of genetic diversity than freshwater fishes. Results for both mtDNA and microsatellites generally conformed to neutral expectations, although weaker relationships were often found between mtDNA nucleotide diversity and ‘abundance’ compared to any other genetic statistic. We speculate that this is because of historical events unrelated to natural selection, although a role for selection cannot be ruled out.     

Relationship between evenness and body size in species rich assemblages

Evenness is a key measure of community structure. Here, we examine the relationship between evenness and size–abundance distributions for both individuals and species using data gathered from Amazonian fish assemblages. We show that evenness increases as the fraction of numerically abundant species in larger body-size classes rises. As any processes that enable larger bodied species to increase their numerical dominance will influence evenness, these results help explain why evenness is an important correlate of ecosystem function.     

Functional significance of ungulate diversity in African savannas and the ecological implications of the spread of pastoralism

The African savanna biome supports a higher diversity of ungulate species than is found in any other biome or continent. This exceptional faunal diversity and herbivore biomass density is directly linked to the high spatial heterogeneity of African savanna ecosystems. The dependence of herbivore dietary tolerance on body size translates into important size-related differences between savanna ungulate species in terms of habitat specificity, geographical range, and the share of community resources exploited. Intact savanna ungulate communities, with species distributed across body size classes and feeding guilds (grazer/browser), have strong regulatory influences on savanna ecosystem structure and function. Replacement with livestock systems of low diversity and high biomass density within a narrow body size range has occurred through the removal of competitors, pathogens, and predators, and the widespread provisioning of water. Overgrazing by livestock, coupled with episodic droughts, has caused widespread rangeland degradation and loss of floristic and faunal diversity which, by current models, is unlikely to recover to 'climax conditions even with destocking. In selected regions where potential still exists, African savanna biodiversity and human economic development will both be best served by the integration of sustainable wildlife utilization into multispecies animal production systems.     

Seasonal variation in the composition of fish assemblages in small Amazonian forest streams: evidence for predictable changes

1. The effects of seasonal inundation on the biology of fishes on floodplains of large Amazonian rivers are well studied. However, the small seasonal changes in headwater streams are generally considered to have little effect on fish assemblages. 2. In this study, we analysed seasonal changes in the species composition and abundance of fish in small Amazonian forest streams. We sampled fish with hand and seine nets in headwater streams in a 10 000 ha terra‐firme forest reserve near Manaus, Brazil. Each stream was surveyed at the end of the 2005 dry season, at the beginning of the 2006 rainy season and at the beginning of the 2006 dry season, by means of a standardized sampling effort. 3. The numbers of individuals and species caught were higher in the dry season, but rarefaction analyses indicated that greater species numbers could have been due simply to the larger number of individuals caught. 4. Between the dry and rainy season, the direction of changes in species composition in multivariate space varied among sites, especially for quantitative (abundance) data. However, the observed variation among sites was the less than expected if the directions of change were random. 5. Fish assemblages in the second dry season were more similar to those in the previous dry season than expected if changes in species composition among seasons were random. This indicates that a general seasonal pattern in fish assemblages can be detected, despite the existence of some erratic site‐specific changes. 6. Most of the species that showed large seasonal variations in density occupy temporary ponds during the rainy season, when much of the valley is inundated and pond networks form adjacent to streams. Short‐duration lateral migrations to these ponds may play an important role in the seasonal fish‐assemblage dynamics in Amazonian headwater streams. 7. Our results contrast with previous studies on small Amazonian streams, which have found little seasonal change in fish assemblages, and highlight the importance of the abundance of common species as an indicator of general fish assemblage structure in biological monitoring programmes.     

Temporal variation of rocky intertidal resident fish assemblages - patterns and possible mechanisms with a note on sampling protocols

In this paper we review the temporal patterns of variation of rocky intertidal resident fish assemblages and discuss possible mechanisms that may explain these patterns. These assemblages tend to be highly resilient and stable on an inter-annual basis, but tend to undergo marked seasonal fluctuations, as different species recruit and reach different phases of their life cycles. Larval supply is usually not a limiting factor suggesting that post-recruitment deterministic mechanisms exert a strong influence on assemblage organization. At methodological level, it is argued that traditional destructive sampling techniques should be avoided whenever possible. It is proposed that a deeper understanding of these assemblages requires more detailed information on intraspecific interactions between members of each constituent species, and information on the interactions between limited numbers of species for which mutually influences are particularly strong. It is argued that size, topography and biotic cover of a pool may provide a limited number of favourable sites for fishes of a given species and class size so that intraspecific competition, and possibly predation of the individuals less able to get access to best sites, may explain to a considerable extent the inter-annual stability and resilience of these assemblages.     

Strong intraspecific variation in genetic diversity and genetic differentiation in Daphnia magna: the effects of population turnover and population size

Theory predicts that genetic diversity and genetic differentiation may strongly vary among populations of the same species depending on population turnover and local population sizes. Yet, despite the importance of these predictions for evolutionary and conservation issues, empirical studies comparing high‐turnover and low‐turnover populations of the same species are scarce. In this study, we used Daphnia magna, a freshwater crustacean, as a model organism for such a comparison. In the southern/central part of its range, D. magna inhabits medium‐sized, stable ponds, whereas in the north, it occurs in small rock pools with strong population turnover. We found that these northern populations have a significantly lower genetic diversity and higher genetic differentiation compared to the southern/central populations. Total genetic diversity across populations was only about half and average within‐population diversity only about a third of that in southern/central populations. Moreover, an average southern population contains more genetic diversity than the whole metapopulation system in the north. We based our analyses both on silent sites and microsatellites. The similarity of our results despite the contrasting mutation rates of these markers suggests that the differences are caused by contemporary rather than by historical processes. Our findings show that variation in population turnover and population size may have a major impact on the genetic diversity and differentiation of populations, and hence may lead to differences in evolutionary processes like local adaptation, hybrid vigour and breeding system evolution in different parts of a species range.     

Integrating spatial and temporal variability into the analysis of fish food web linkages in Tijuana Estuary

Our understanding of fish feeding interactions at Tijuana Estuary was improved by incorporating estimates of spatial and temporal variability into diet analyses. We examined the stomach contents of 7 dominant species (n=579 total fish) collected between 1994 and 1999. General feeding patterns pooled over time produced a basic food web consisting of 3 major trophic levels: (1) primary consumers (Atherinops affinis, Mugil cephalus) that ingested substantial amounts of plant material and detritus; (2) benthic carnivores (Clevelandia ios, Hypsopsetta guttulata, Gillichthys mirabilis, and Fundulus parvipinnis) that ingested high numbers of calanoid copepods and exotic amphipods (Grandidierella japonica); and (3) piscivores (Paralichthys californicus and Leptocottus armatus) that often preyed on smaller gobiids. Similarity-based groupings of individual species' diets were identified using nonmetric multidimensional scaling to characterize their variability within and between species, and in space and time. This allowed us identify major dietary shifts and recognize events (i.e., modified prey abundance during 1997–98 El Ni no floods) that likely caused these shifts.     

Species turnover, community boundaries and biogeographical composition of dung beetle assemblages across an altitudinal gradient in South Africa

Aim To identify biogeographical boundaries which are obscured by faunal overlap and habitat modification. Location KwaZulu-Natal in south-east, South Africa beyond the southern tip of the Moçambique Coastal Plain. Methods Species abundance data for dung beetles (Scarabaeidae: Scarabaeinae) were collected at six levels from the coastal escarpment (30°16′S – 500 m) to the top of the nearby Drakensberg (29°35′S – 2850 m). Cross-altitudinal boundaries were identified using clustering techniques, beta-diversity indices, and range edge analysis. Biogeographical data for the species were drawn from an extensive reference collection and used to classify the biogeographical affinities of the assemblages. Results Three discrete communities are defined (<10% similarity) from species abundance distributions. These communities occur in coastal forest (500 m), coastal to highveld grassland (500–1500 m), and montane grassland (1900–2850 m). Two of these communities are biogeographically homogeneous comprising >89% east coast endemics (coastal forest) or >84% South African montane endemics (montane grassland) in terms of abundance. The third community in coastal to highveld grassland is biogeographically more heterogeneous. Predominant biota of this community comprise both South African highveld endemics and elements with distributions extending into the tropics. At highveld levels (1500 m), there are proportionately more highveld endemics whereas at lowland levels (500 m), there are proportionately more tropical elements. At 1000 m, there was a change in the balance between these two groups across an anthropogenic gradient due to a decline in the proportion of endemics in favour of temperate/tropical generalists. This gradient from a natural grassland fragment to improved pastures of Kikuyu grass also parallels a decline in species richness and abundance. Species turnover analyses showed three different cross-altitudinal patterns. Range-edge analysis showed a trimodal pattern of species turnover (peaks in forest and the Drakensberg foothills as in the community analysis but also at 1000 m). Five beta-diversity indices showed either a bimodal pattern of turnover (forest/grassland and foothills/middle Drakensberg slopes) or a trimodal turnover pattern (forest/grassland, highveld/Drakensberg foothills, Drakensberg peaks). Main conclusions Clear altitudinal zonation is revealed by community and biogeographical analysis but one natural biogeographical boundary may be obscured by the process of habitat modification. This boundary at 1000 m is revealed by range-edge analysis and is supported by findings for plant communities. Beta-diversity, species turnover patterns diverged slightly from those suggested by the community and range-edge analyses.     

On estimating diversity in species-rich fish assemblages: an example with coral-reef fishes of eastern Indonesia

A new procedure for estimating fish species richness in open or semi-open habitats is presented with unpublished data on the coral-reef fish assemblages of Raja Ampat, eastern Indonesia, known as the centre of marine biodiversity in the western Pacific.     

Navigation impacts on freshwater fish assemblages: the ecological relevance of swimming performance

Waterways provide many ecological and socialservices, such as water supply, navigation,freshwater reservoirs for aquatic organisms,recreation, and fisheries. However, in heavilydeveloped waterways, the diversity andproductivity of fish assemblages typicallybecome reduced, mainly due to migrationbarriers, pollution, habitat loss, and biotopesimplification. Additionally, navigation maydirectly or indirectly reduce fish assemblages,amplifying the effects of habitat destruction.This study summarizes navigation impacts toimprove the evaluation of direct navigationeffects on fish assemblages. Literature onhydraulic forces created by moving tows wasreviewed to compare the pressures induced byshipping with the biological capabilities offish, especially with their swimming speeds.Available studies of swimming performance offreshwater fishes were compiled to developgeneral models of length-specific burst, aswell as critical swimming speeds. Modelsregressing total length on burst and criticalswimming speeds were highly significant.Linking applied hydrology and hydraulicengineering with fish ecology and physiology,absolute speed was concluded to be the bestpredictor for thresholds and limitations ofhabitat use by fish. A navigation-inducedhabitat bottleneck hypothesis (NBH) wasinferred from the threshold flow velocity,determining habitat availability for fish.According to the NBH presented here, swimmingperformance of juvenile freshwater fish is themajor bottleneck for fish recruitment inwaterways, as a result of their inability towithstand bank-directed navigation-inducedphysical forces. In essence, under commonnavigation conditions, with respect to inlandwaterway morphology, channel cross section,vessel speeds, and dimensions of commercialvessels, the navigation-induced return currentsalong the shore are usually around 0.8 ms^–1 (0.7–1.0 m s^–1) accompanied by a0.1–0.3 m drawdown. Under such conditions, theproposed threshold for small fish survival wasestimated to be 147 mm total length at criticalswimming performance (>20 s – 60 min withoutfatigue) and 47 mm at burst performance (<20s). These theoretical findings were supportedby empirical studies of fish recruitment inwaterways. The strong dependence of fishrecruitment on hydraulic forces opens uppossibilities of formulating suitable criteriafor safe ship operation (speed and distance tobank), as well as for effective fairwaymanagement (construction and maintenance) andsustainable fish conservation (species andproduction). A more ecologically orientatedhydraulic engineering will not constraincommercial navigation and their socioeconomicbenefits, but it will substantially enhancefish recruitment in waterways and theirecological sustainability, for the overallbenefit of fish, fisheries, and society.