Concentration-dependent patterns of leucine incorporation by coastal picoplankton

Coastal pelagic environments are believed to feature concentration gradients of dissolved organic carbon at a microscale, and they are characterized by pronounced seasonal differences in substrate availability for the heterotrophic picoplankton. Microbial taxa that coexist in such habitats might thus differ in their ability to incorporate substrates at various concentrations. We investigated the incorporation patterns of leucine in four microbial lineages from the coastal North Sea at concentrations between 0.1 and 100 nM before and during a spring phytoplankton bloom. Community bulk incorporation rates and the fraction of leucine-incorporating cells in the different populations were analyzed. Significantly fewer bacterial cells incorporated the amino acid before (13 to 35%) than during (23 to 47%) the bloom at all but the highest concentration. The incorporation rate per active cell in the prebloom situation was constant above 0.1 nM added leucine, whereas it increased steeply with substrate concentration during the bloom. At both time points, a high proportion of members of the Roseobacter clade incorporated leucine at all concentrations (55 to 80% and 86 to 94%, respectively). In contrast, the fractions of leucine-incorporating cells increased substantially with substrate availability in bacteria from the SAR86 clade (8 to 31%) and from DE cluster 2 of the Flavobacteria-Sphingobacteria (14 to 33%). The incorporation patterns of marine Euryarchaeota were between these extremes (30 to 56% and 48 to 70%, respectively). Our results suggest that the contribution of microbial taxa to the turnover of particular substrates may be concentration dependent. This may help us to understand the specific niches of coexisting populations that appear to compete for the same resources.     

Photosynthetic production and exoenzymatic degradation of organic matter in the euphotic zone of a eutrophic lake

Photosynthetic production of organic matter, and its exoenzymaticdecomposition were studied in the euphotic zone of a naturallyeutrophic lake during early spring phytoplankton bloom, andafter its breakdown. Phytoplankton were the major biomass producerswhen algae were actively growing, and the algal fraction (>3.0µm) contributed on average 75–80% to the total biomassof microplankton. When the phytoplankton bloom began to declinebacterial biomass increased rapidly and, at the end of the bloom,bacteria contributed 48.7–69.98% to the total biomassof microplankton. The high bacterial abundance during phytoplanktonbloom breakdown followed the highest rates of glucose uptake,and the highest rates of alkaline phosphatase, leucine-amino-peptidase,ß-galactosidase and ß-glucosidase activities.The majority of enzyme activity was associated with the bacterialsize fraction of seston. The activities of free (dissolved inwater) exoenzymes were negligible. The synthesis of bacterialexoenzymes was under control of an induction/derepression mechanism,and depended on the amount of easily assimilable substrates,and/or the presence of polymeric organic compounds in the water,which served as substrates for exoenzymatic hydrolysis. Thetight metabolic coupling between bacterial exoenzymatic hydrolysisand uptake of low molecular weight substrates, and its ecologicalsignificance is discussed.     

Concentration-Dependent Patterns of Leucine Incorporation by Coastal Picoplankton

Coastal pelagic environments are believed to feature concentration gradients of dissolved organic carbon at a microscale, and they are characterized by pronounced seasonal differences in substrate availability for the heterotrophic picoplankton. Microbial taxa that coexist in such habitats might thus differ in their ability to incorporate substrates at various concentrations. We investigated the incorporation patterns of leucine in four microbial lineages from the coastal North Sea at concentrations between 0.1 and 100 nM before and during a spring phytoplankton bloom. Community bulk incorporation rates and the fraction of leucine-incorporating cells in the different populations were analyzed. Significantly fewer bacterial cells incorporated the amino acid before (13 to 35%) than during (23 to 47%) the bloom at all but the highest concentration. The incorporation rate per active cell in the prebloom situation was constant above 0.1 nM added leucine, whereas it increased steeply with substrate concentration during the bloom. At both time points, a high proportion of members of the Roseobacter clade incorporated leucine at all concentrations (55 to 80% and 86 to 94%, respectively). In contrast, the fractions of leucine-incorporating cells increased substantially with substrate availability in bacteria from the SAR86 clade (8 to 31%) and from DE cluster 2 of the Flavobacteria-Sphingobacteria (14 to 33%). The incorporation patterns of marine Euryarchaeota were between these extremes (30 to 56% and 48 to 70%, respectively). Our results suggest that the contribution of microbial taxa to the turnover of particular substrates may be concentration dependent. This may help us to understand the specific niches of coexisting populations that appear to compete for the same resources.     

Biodegradation of photosynthetically produced extracellular organic carbon from intertidal benthic algae

14C-labeled extracellular products of a natural microphytobenthic community and two species of benthic diatoms (Nitzschia hybridaeformis and Amphora coffeaeformis) were fractionated into extracellular dissolved organic carbon (14C-EDOC), organic carbon extracted with EDTA (14C-EDTA-extractable OC) and extracellular polymeric substances (14C-EPS). The biodegradation of this labeled extracellular organic carbon by bacteria in sediments was examined to determine the processes of enzymatic degradation of photosynthetically-produced extracellular organic carbon from microphytobenthos in an intertidal flat ecosystem. In addition, primary production as well as extracellular enzyme activities (beta- and alpha-glucosidase) were measured to evaluate the possible relationship between organic carbon production and microbiological degradation at the Isshiki intertidal flat in Mikawa Bay, Japan. With all three 14C-fractions extracted from a natural microphytobenthic assemblage and two species of benthic diatoms, more than 50% of the added substrates were mineralized within 24 h by the bacterial community in sediments. At that time, the percentage of high-molecular-weight compounds (>5 K MW) to total MW compounds of 14C-EDTA-extractable OC and 14C-EPS fractions decreased within 24 h from 50.9 to 6.6% and 74.5 to 11.1%, respectively. In situ, beta- and alpha-glucosidase activity in sediment was higher than in the seawater column (at a depth of 1 m), though the photosynthetic production of microphytobenthos was equal to that of phytoplankton. Based on our previous studies that microphytobenthos produced much more extracellular products than phytoplankton, it is assumed from these results that carbon flowing into the microbial loop through the mediation of enzymatic degradation of extracellular products in a benthic system exceeds that in the overlying water column.     

Attached and free-living bacteria: Production and polymer hydrolysis during a diatom bloom

Abundance, production and extracellular enzymatic activity of free-living and attached bacteria were measured during the development and collapse of a spring bloom in a eutrophic lake. Free-living bacteria accounted for most of the total bacterial production during the first part of the bloom. Their production had a significant positive correlation to chlorophyll (P < .01) and polysaccharide concentration (P < .02) and to potential -glucosidase and aminopeptidase activity (P < .05), suggesting that algal release of dissolved polymeric compounds provided an important carbon source for bacterial production. As the bloom collapsed, we observed a change in the activity and structure of the microbial community. The mean contribution of attached bacteria to total bacterial production increased from 12% during the first part of the bloom to 26% at the end. Also, the extracellular enzymatic activity of attached bacteria increased as the bloom collapsed and constituted up to 75% of the total hydrolytic activity. An estimated disparity between hydrolytic activity and the corresponding carbon demand of attached bacteria suggested a net release of dissolved organic compounds from organic particles via polymer hydrolysis by attached bacteria. Correspondence to: M. Middelboe     

Mesocosm experiments: mimicking seasonal developments of microbial variables in North Sea sediments

This study investigated the suitability of mesocosms for studying the seasonal development of microbial variables in the benthic system of the North Sea. Undisturbed sediment cores were taken from two locations in the North Sea, one with sandy sediment (28 m depth) and the other with silty sediment (38 m depth) and installed in mesocosms in January–April 1989. Cores were kept as in situ temperature in the dark until December 1989. One set of sandy and silty sediments was starved and the other set received a supply of organic matter in May–June, simulating the settlement of the spring bloom of Phaeocystis pouchetii. Seasonal developments in bacterial production (methyl ³H-thymidine incorporation), abundance and biomass of bacteria and nanoflagellates and oxygen consumption were compared between the mesocosms and the field in surface sediments every 1.5 to 2.5 months. Effects of seasonal temperature variations (range 6–17.5 °C) on microbial variables in starved mesocosms were limited, which possibly indicates a subordinate role of temperature in microbial processes in North Sea sediments. Organic matter produced a direct response in bacterial production and oxygen consumption in mesocosms. Bacterial and protozoan abundance also increased. The effect of the organic input disappeared within 2 months and values of enhanced variables declined to initial levels. The organic matter enrichment in mesocosms apparently did not provide sufficient energy to keep the microbenthos active at field levels through summer.These results suggest that in the silty sediments in the field, organic matter is available for bacterial production throughout summer. In sandy sediments, the major organic matter input, which sets the seasonal pattern, appears to be in June. Apparently the seasonal development of microbial variables can be mimicked in mesocosms with organic matter supplies. Differences between the field and mesocosms are further illustrated by carbon budgets. Recycling of bacterial biomass was required to meet the bacterial carbon demand in the budget.Publication No. 22 of the project Applied Scientific Research Neth. Inst. for Sea Res. (BEWON).     

Estimation of export production in the coastal Baltic Sea: effect of resuspension and microbial decomposition on sedimentation measurements

Hydrography, nutrient concentrations, primary production and sedimentation of particulate matter were studied during spring, late summer and autumn in the coastal area of the northern Baltic Sea, SW Finland. Vernal phytoplankton productivity peak and biomass maximum in early May were followed by high sedimentation rates of organic matter at the end of May. In summer, sedimentation rates of organic material were generally low. The decay rates of organic carbon in the sediment traps, estimated by measuring oxygen uptake of settled organic matter, varied between 0.005 to 0.08 d^–1 and were on average 0.02 d^–1. Decomposition of organic matter inside the sediment traps was mainly controlled by temperature, while also organic contents of settled material were significant. Microbial decomposition decreased sedimentation rates of organic carbon and nitrogen on average by 11% and 15%, respectively, during the whole study period of ca. 6 months. Resuspension of organic matter from sediment surface was estimated to contribute ca. 17 and 24% of the total sedimentation of organic carbon during spring and summer, respectively. Export production (i.e. primary sedimentation of organic carbon corrected by decomposition) was estimated to be 32% of the net primary production during the whole productive season and 42% in spring when the flux of primary settling material was greatest. Sedimentation of the spring bloom was the major annual supply of organic matter to the benthos (>80% of the total primary sedimentation).     

The role of sedimentation and resuspension for the transport of sediments and contaminants in the Skagerrak

An investigation was conducted in winter of 1997/1998 in the Skagerrak off southern Norway to collect data on the influence of sedimentation and resuspension on the transport of organic contaminants. Data from the water column and sediments, as well as on sedimentation and current regime near the sea floor, indicated that the deposition of contaminants is a continual process. Deposition is subject not only to seasonal biological processes such as growth and sedimentation of the spring phytoplankton bloom, but also to hydrographic events such as surges in near-bottom currents causing sediment resuspension. Contaminants at the sea floor may be transported considerable distances. It is suggested that in simplest terms, this transport can be envisaged as a conveyor belt skipping along the seabed. The dominant iterative processes regulating this near-bottom transport are sedimentation, resuspension and advection. In this way, particles and associated polycyclic aromatic hydrocarbons, as well as other hydrophobic contaminants, may be transported over hundreds of kilometers.     

Microbial community composition and function in permanently cold seawater and sediments from an arctic fjord of svalbard

Heterotrophic microbial communities in seawater and sediments metabolize much of the organic carbon produced in the ocean. Although carbon cycling and preservation depend critically on the capabilities of these microbial communities, their compositions and capabilities have seldom been examined simultaneously at the same site. To compare the abilities of seawater and sedimentary microbial communities to initiate organic matter degradation, we measured the extracellular enzymatic hydrolysis rates of 10 substrates (polysaccharides and algal extracts) in surface seawater and bottom water as well as in surface and anoxic sediments of an Arctic fjord. Patterns of enzyme activities differed between seawater and sediments, not just quantitatively, in accordance with higher cell numbers in sediments, but also in their more diversified enzyme spectrum. Sedimentary microbial communities hydrolyzed all of the fluorescently labeled polysaccharide and algal extracts, in most cases at higher rates in subsurface than surface sediments. In seawater, in contrast, only 5 of the 7 polysaccharides and 2 of the 3 algal extracts were hydrolyzed, and hydrolysis rates in surface and deepwater were virtually identical. To compare bacterial communities, 16S rRNA gene clone libraries were constructed from the same seawater and sediment samples; they diverged strongly in composition. Thus, the broader enzymatic capabilities of the sedimentary microbial communities may result from the compositional differences between seawater and sedimentary microbial communities, rather than from gene expression differences among compositionally similar communities. The greater number of phylum- and subphylum-level lineages and operational taxonomic units in sediments than in seawater samples may reflect the necessity of a wider range of enzymatic capabilities and strategies to access organic matter that has already been degraded during passage through the water column. When transformations of marine organic matter are considered, differences in community composition and their different abilities to access organic matter should be taken into account.     

Bacterial metabolism in the River Danube: parameters influencing bacterial production

1. Microbial parameters were determined at five sampling sites in the River Danube up-and downstream of Vienna, Austria, twice monthly over an annual cycle. Bacterial production (BP) was estimated from thymidine and leucine incorporations; additionally, the effect of turbulence on BP and the conversion factors for converting incorporation rates into bacterial cell production were determined using the cumulative approach. 2. BP under turbulent conditions was not significantly different from that under stagnant conditions. For thymidine, a mean annual conversion factor of 3.2 ± 10¹⁸ cells mol^?1 thymidine incorporated was calculated. For leucine, the corresponding factor was 0.07 ± 10¹⁸ cells mol^?1 leucine. Average annual BP calculated by thymidine incorporation was significantly higher than BP calculated from leucine incorporation and ranged from 47.2 to 77.5 μg C 1-^?1 day^?1 depending on the tracer and the conversion factor used. 3. Bacterial growth rates ranged from 0.1 day^?1 during winter to 1.7 day^?1 in the summer. A strong correlation was found between temperature as well as chlorophyll a and bacterial growth when temperature was greater than 5 °C; a major spring phytoplankton bloom at a temperature below 5 °C did not increase BP. 4. Dissolved organic carbon (DOC) concentrations varied between 2 and 7.2 mg C 1-^?1 and comprised between 50 and 92% of the total organic carbon pool in the River Danube, Based on the DOC concentration and an assumed bacterial growth yield of 20% we calculated mean DOC turnover times of around 60 days in the winter and less than 8 days during the summer.     

Organic Carbon Degradation in Arctic Marine Sediments,Svalbard: A Comparison of Initial and Terminal Steps

Degradation of marine organic matter under anoxic conditions involves microbial communities working in concert to remineralize complex substrates to CO ₂ . In order to investigate the coupling between the initial and terminal steps of this sequence in permanently cold sediments, rates of extracellular enzymatic hydrolysis and sulfate reduction were measured in parallel cores collected from 5 fjords on the west and northwest coast of Svalbard, in the high Arctic. Inventories of total dissolved carbohydrates were also measured in order to evaluate their potential role in carbon turnover. Polysaccharide hydrolysis rates exhibited substrate-related and, to a lesser extent, depth-related differences (p < 0.0001); laminarin hydrolysis was consistently most rapid at nearly all depths and sites, and fucoidan hydrolysis was least rapid. Although there was a high degree of variability in parallel cores, sulfate reduction rates also exhibited statistically significant depth-and station-related differences. A comparison with data from previous investigations in Svalbard sediments suggests that this variability is linked to substrate availability rather than to organism distribution. Total dissolved carbohydrate concentrations were comparable to those measured in more temperate sediments, and likely comprise a considerable fraction of porewater dissolved organic carbon. A comparison of dissolved carbohydrate inventories with hydrolysis and sulfate reduction rates suggests that the turnover of carbon through the dissolved pool occurs quite rapidly, on the order of a few days to weeks. The transformation of particulate to dissolved organic matter must also be sufficiently rapid to maintain the measured rates of terminal remineralization.     

Seasonal and Diel Variability in Dissolved DNA and in Microbial Biomass and Activity in a Subtropical Estuary

Dissolved DNA and microbial biomass and activity parameters were measured over a 15-month period at three stations along a salinity gradient in Tampa Bay, Fla. Dissolved DNA showed seasonal variation, with minimal values in December and January and maximal values in summer months (July and August). This pattern of seasonal variation followed that of particulate DNA and water temperature and did not correlate with bacterioplankton (direct counts and [³H]thymidine incorporation) or phytoplankton (chlorophyll a and ¹⁴CO₂ fixation) biomass and activity. Microautotrophic populations showed maxima in the spring and fall, whereas microheterotrophic activity was greatest in late summer (September). Both autotrophic and heterotrophic microbial activity was greatest at the high estuarine (low salinity) station and lowest at the mouth of the bay (high salinity station), irrespective of season. Dissolved DNA carbon and phosphorus constituted 0.11 ± 0.05% of the dissolved organic carbon and 6.6 ± 6.5% of the dissolved organic phosphorus, respectively. Strong diel periodicity was noted in dissolved DNA and in microbial activity in Bayboro Harbor during the dry season. A noon maximum in primary productivity was followed by an 8 p.m. maximum in heterotrophic activity and a midnight maximum in dissolved DNA. This diel periodicity was less pronounced in the wet season, when microbial parameters were strongly influenced by episodic inputs of freshwater. These results suggest that seasonal and diel production of dissolved DNA is driven by primary production, either through direct DNA release by phytoplankton, or more likely, through growth of bacterioplankton on phytoplankton exudates, followed by excretion and lysis.     

Production of dissolved DNA, RNA, and protein by microbial populations in a Florida reservoir.

Production of dissolved macromolecules by ambient autotrophic and heterotrophic microbial populations was measured in a eutrophic Florida reservoir by in situ labeling with various radioactive substrates. When [3H]thymidine was used as the precursor, production of labeled dissolved DNA, RNA, and protein was observed. The rate of production of labeled dissolved macromolecules was 3.1% the rate of cellular incorporation of [3H]thymidine, and the production of dissolved DNA represented 2.3% the rate of cellular DNA incorporation. Microautotrophic populations labeled with NaH[14C]CO3 produced dissolved RNA and protein at rates of 0.24 and 0.11 micrograms of C/liter per h, respectively, or 1.8% the total rate of carbon fixation, with no measurable dissolved DNA production. In an attempt to specifically label phytoplankton DNA, samples were incubated with [3H]adenine or 32Pi in the presence and absence of the photosynthetic inhibitor 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU). Although DCMU inhibited 14C fixation by approximately 99%, this antimetabolite had only a slight effect on [3H]adenine incorporation and no effect on 32P incorporation into cellular macromolecules. Significant amounts of dissolved DNA were produced in both [3H]adenine and 32Pi incubations, but again DCMU had no effect on the production rates. These results indicate that actively growing populations of both phytoplankton and bacterioplankton produced dissolved RNA and protein, while only active bacterioplankton produced measurable quantities of dissolved DNA. Dead or senescent phytoplankton may have produced dissolved DNA, but would not be measured in the relatively short incubations used. These findings also indicate that [3H]adenine and 32Pi primarily labeled heterotrophic bacterioplankton and not phytoplankton in this environment.     

Production of dissolved DNA, RNA, and protein by microbial populations in a Florida reservoir.

Production of dissolved macromolecules by ambient autotrophic and heterotrophic microbial populations was measured in a eutrophic Florida reservoir by in situ labeling with various radioactive substrates. When [3H]thymidine was used as the precursor, production of labeled dissolved DNA, RNA, and protein was observed. The rate of production of labeled dissolved macromolecules was 3.1% the rate of cellular incorporation of [3H]thymidine, and the production of dissolved DNA represented 2.3% the rate of cellular DNA incorporation. Microautotrophic populations labeled with NaH[14C]CO3 produced dissolved RNA and protein at rates of 0.24 and 0.11 micrograms of C/liter per h, respectively, or 1.8% the total rate of carbon fixation, with no measurable dissolved DNA production. In an attempt to specifically label phytoplankton DNA, samples were incubated with [3H]adenine or 32Pi in the presence and absence of the photosynthetic inhibitor 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU). Although DCMU inhibited 14C fixation by approximately 99%, this antimetabolite had only a slight effect on [3H]adenine incorporation and no effect on 32P incorporation into cellular macromolecules. Significant amounts of dissolved DNA were produced in both [3H]adenine and 32Pi incubations, but again DCMU had no effect on the production rates. These results indicate that actively growing populations of both phytoplankton and bacterioplankton produced dissolved RNA and protein, while only active bacterioplankton produced measurable quantities of dissolved DNA. Dead or senescent phytoplankton may have produced dissolved DNA, but would not be measured in the relatively short incubations used. These findings also indicate that [3H]adenine and 32Pi primarily labeled heterotrophic bacterioplankton and not phytoplankton in this environment.     

Book reviews

Wetlands have been widely applied for water quality amelioration. Enzymatic analysis was applied in a study of decomposition in constructed wetlands. We hypothesise that soil enzyme activities would be lower in wetland sediment than adjacent upland and that the lower soil enzyme activities are partly responsible for the water quality amelioration. Four soil enzyme activities (β-glucosidase, β-N-acetylglucosaminidase, phosphatase, and arylsulfatase) and microbial activity (electron transport system activity) were measured across a transect from a upland soil to a wetland sediment in two constructed wetland sites in the USA. Along with the activities, hydrochemistry was determined in inflow and outflow of the wetlands. In both wetlands, the enzyme activities in the sediments were significantly lower than the adjacent upland soils. For hydrochemistry, significant decreases were observed in phosphate and nitrate concentrations in outflow water compared to inflow water. However, there were no significant changes in other anions (F^-, Cl^-, SO ₄ ^2- . For dissolved organic carbon, it seems that the wetlands would be a source rather than a sink. The results suggest that the enzymatic approach represents a valuable method to assess decomposition processes in wetland sediments, and that characteristically low enzyme activities in the sediments may be important in the water quality amelioration function. This revised version was published online in July 2006 with corrections to the Cover Date.     

Centennial decline in North Sea water clarity causes strong delay in phytoplankton bloom timing

With climate warming, a widespread expectation is that events in spring, such as flowering, bird migrations, and insect bursts, will occur earlier because of increasing temperature. At high latitudes, increased ocean temperature is suggested to advance the spring phytoplankton bloom due to earlier stabilization of the water column. However, climate warming is also expected to cause browning in lakes and rivers due to increases in terrestrial greening, ultimately reducing water clarity in coastal areas where freshwater drain. In shallow areas, decreased retention of sediments on the seabed will add to this effect. Both browning and resuspension of sediments imply a reduction of the euphotic zone and Sverdrup's critical depth leading to a delay in the spring bloom, counteracting the effect of increasing temperature. Here, we provide evidence that such a transparency reduction has already taken place in both the deep and shallow areas of the North Sea during the 20th century. A sensitivity analysis using a water column model suggests that the reduced transparency might have caused up to 3 weeks delay in the spring bloom over the last century. This delay stands in contrast to the earlier bloom onset expected from global warming, thus highlighting the importance of including changing water transparency in analyses of phytoplankton phenology and primary production. This appears to be of particular relevance for coastal waters, where increased concentrations of absorbing and scattering substances (sediments, dissolved organic matter) have been suggested to lead to coastal darkening.     

Sequential bioavailability of sedimentary organic matter to heterotrophic bacteria

Aquatic sediments harbour diverse microbial communities that mediate organic matter degradation and influence biogeochemical cycles. The pool of bioavailable carbon continuously changes as a result of abiotic processes and microbial activity. It remains unclear how microbial communities respond to heterogeneous organic matrices and how this ultimately affects heterotrophic respiration. To explore the relationships between the degradation of mixed carbon substrates and microbial activity, we incubated batches of organic‐rich sediments in a novel bioreactor (IsoCaRB) that permitted continuous observations of CO₂ production rates, as well as sequential sampling of isotopic signatures (δ¹³C, Δ¹⁴C), microbial community structure and diversity, and extracellular enzyme activity. Our results indicated that lower molecular weight (MW), labile, phytoplankton‐derived compounds were degraded first, followed by petroleum‐derived exogenous pollutants, and finally by higher MW polymeric plant material. This shift in utilization coincided with a community succession and increased extracellular enzyme activities. Thus, sequential utilization of different carbon pools induced changes at both the community and cellular level, shifting community composition, enzyme activity, respiration rates, and residual organic matter reactivity. Our results provide novel insight into the accessibility of sedimentary organic matter and demonstrate how bioavailability of natural organic substrates may affect the function and composition of heterotrophic bacterial populations.     

Differences in the substrate spectrum of extracellular enzymes in shallow lakes of differing trophic status

Organic matter fluxes and food web interactions in lakes depend on the abilities of heterotrophic microbial communities to access and degrade organic matter, a process that begins with extracellular hydrolysis of high molecular weight substrates. In order to determine whether patterns of enzymatic hydrolysis vary among shallow lakes of different trophic status, we investigated the hydrolysis of six specific organic macromolecules (polysaccharides) in the spring and late summer in four adjacent shallow lakes of eutrophic, oligotrophic, and dystrophic status in coastal North Carolina, USA. The spectrum of enzyme activities detected differed strongly between lakes, with all six polysaccharides hydrolyzed in West Mattamuskeet in May, while only two substrates were hydrolyzed in Lake Phelps in August/September. Differences in the spectrum of enzyme activities, and therefore the capabilities of heterotrophic microbial communities, were likely driven by variations among lakes in primary productivity patterns, sediment–water interactions, and/or water chemistry. Our data represent a first step towards a better understanding of carbon substrate availability and differences in carbon cycling pathways in shallow lakes of different trophic status.     

Seasonal microbial processes in a high-latitude fjord (Kongsfjorden, Svalbard): I. Heterotrophic bacteria, picoplankton and nanoflagellates

Temporal dynamics of the microbial food web in the Barents Sea and adjacent water masses in the European Arctic are to a large extent unknown. Seasonal variation in stocks and production rates of heterotrophic bacteria and phototrophic and heterotrophic picoplankton and nanoflagellates was investigated in the upper 50 m of the high-latitude Kongsfjorden, Svalbard, during six field campaigns between March and December 2006. Heterotrophic bacteria, picoplankton and nanoflagellates contributed to ecosystem structure and function in all seasons. Activity within the microbial food web peaked during spring bloom in April, parallel to low abundances of mesozooplankton. In the nutrient-limited post-bloom scenario, an efficient microbial loop, fuelled by dissolved organic carbon from abundant mesozooplankton feeding on phytoplankton and protozooplankton, facilitated maximum integrated primary production rates. A tight microbial food web consisting of heterotrophic bacteria and phototrophic and heterotrophic picoplankton and nanoflagellates was found in the stratified water masses encountered in July and September. Microbial stocks and rates were low but persistent under winter conditions. Seasonal comparisons of microbial biomass and production revealed that structure and function of the microbial food web were fundamentally different during the spring bloom when compared with other seasons. While the microbial food web was in a regenerative mode most of the time, during the spring bloom, a microbial transfer mode represented a trophic link for organic carbon in time and space. The microbial food web’s ability to fill different functional roles in periods dominated by new and regenerated production may enhance the ecological flexibility of pelagic ecosystems in the present era of climate change.