Inactivation of ccmO in Synechococcus sp. Strain PCC 7942 Results in a Mutant Requiring High Levels of CO2

Inactivation of ccmO in Synechococcus sp. strain PCC 7942 resulted in a mutant which possesses aberrant carboxysomes and a normal inorganic carbon uptake capability but a reduced ability to photosynthetically utilize the internal inorganic carbon pool. Consequently, it exhibits low apparent photosynthetic affinity for extracellular inorganic carbon and demands high levels of CO₂ for growth.     

Impact of sinking carbon flux on accumulation of deep-ocean carbon in the Northern Indian Ocean

The export of carbon through the biological pump from the surface to the deep ocean has a direct influence on the removal of CO₂ from the atmosphere. This is because the carbon is sequestered for only a few days to months in the surface while the carbon removed from the surface to deep waters takes hundreds of years to re-enter the atmosphere. The highest dissolved inorganic carbon (DIC) is expected in the deep waters of the North Pacific due to longer age of waters. On contrary, the higher deep water DIC is found in the northern Indian Ocean than elsewhere in the World Oceans. The sinking fluxes of particulate organic (POC) and inorganic carbon (CaCO₃) are found to be the highest in the northern Indian Ocean. The rates of bacterial respiration, organic carbon regeneration and inorganic carbon dissolution are also found to be the highest in the northern Indian Ocean than elsewhere. A most efficient biological pump appears to be operating in the northern Indian Ocean that transports surface-derived organic/inorganic carbon to deeper layers where it is converted and stored for longer times in dissolved inorganic form.     

Source—sink characteristics of carbon transport in Chara hispida

Abstract Rates of uptake of ¹⁴C-labelled inorganic carbon were measured for whole Chara hispida plants, detached parts of the shoot and isolated (split-chamber technique) apices, lateral branchlets and rhizoid—node complexes. The rates of inorganic carbon uptake by the rhizoid—node complex expressed per gram fresh weight whole plant were three to four orders of magnitude less than the uptake for the whole plant. Up to 70% of the carbon taken up by the rhizoid—node complex was translocated to the shoot. After 12 h exposure to ¹⁴C-labelled inorganic carbon the concentration of ¹⁴C was greater in apices than in uppermost or central internodal cells and in all lateral branchlets, regardless of whether label was supplied to the whole plant or isolated rhizoid—node complexes. Measurement of inorganic carbon uptake by detached internodal cells and detached and isolated apices and lateral branchlets showed that lateral branchlets had the greatest rates of inorganic carbon uptake. During 12 h exposure to ¹⁴C, isolated lateral branchlets translocated to the attached shoot 55% of the labelled carbon taken up; for isolated apices this value was only 13%. It is concluded that it is highly unlikely that the rhizoid of Chara hispida could acquire a significant fraction of the whole plant requirement for inorganic carbon and that apices are sink regions for photosynthate while lateral branchlets are source regions.     

Modelling microalgal activity as a function of inorganic carbon concentration: accounting for the impact of pH on the bicarbonate system

The aim of this study is to develop a generic model that can predict algal photosynthetic activity as a function of total inorganic carbon and pH, which will assist in the design and operation of algal culture systems. This is important as the availability of inorganic carbon plays a critical role in algal growth and product accumulation, and in practice, pH is not constant in an algal culture. Hence, such a model will assist in predicting and understanding carbon limitation in algae growth and product accumulation systems. The model builds on published work on inorganic carbon uptake in natural algal systems and extends it to systematically account for wide pH and total inorganic carbon ranges. This study develops and validates a simple model which integrates a summative carbon dioxide and bicarbonate Monod kinetic relationship with inorganic carbon equilibrium chemistry. This is the first time that the algal photosynthetic oxygen production rate has been described as a function of both total inorganic carbon and pH. The model was tested against published and experimental data over an extended pH and total inorganic carbon range. Kinetic parameters estimated by the model match those presented in the literature. The Chlorella alga tested in the experiments showed little affinity for bicarbonate which agrees with previous observations for this alga.     

Storage/Turnover Rate of Inorganic Carbon and Its Dissolvable Part in the Profile of Saline/Alkaline Soils

Soil inorganic carbon is the most common form of carbon in arid and semiarid regions, and has a very long turnover time. However, little is known about dissolved inorganic carbon storage and its turnover time in these soils. With 81 soil samples taken from 6 profiles in the southern Gurbantongute Desert, China, we investigated the soil inorganic carbon (SIC) and the soil dissolved inorganic carbon (SDIC) in whole profiles of saline and alkaline soils by analyzing their contents and ages with radiocarbon dating. The results showed that there is considerable SDIC content in SIC, and the variations of SDIC and SIC contents in the saline soil profile were much larger than that in the alkaline profile. SDIC storage accounted for more than 20% of SIC storage, indicating that more than 1/5 of the inorganic carbon in both saline and alkaline soil is not in non-leachable forms. Deep layer soil contains considerable inorganic carbon, with more than 80% of the soil carbon stored below 1 m, whether for SDIC or SIC. More importantly, SDIC ages were much younger than SIC in both saline soil and alkaline soil. The input rate of SDIC and SIC ranged from 7.58 to 29.54 g C m^-2 yr^-1 and 1.34 to 5.33 g C m^-2 yr^-1 respectively for saline soil, and from 1.43 to 4.9 g C m^-2 yr^-1 and 0.79 to 1.27 g C m^-2 yr^-1respectively for alkaline soil. The comparison of SDIC and SIC residence time showed that using soil inorganic carbon to estimate soil carbon turnover would obscure an important fraction that contributes to the modern carbon cycle: namely the shorter residence and higher input rate of SDIC. This is especially true for SDIC in deep layers of the soil profile.     

Diel Pattern of Photosynthate Partitioning in Phytoplankton Population in an Oligomesotrophic Lake

The aim of this study was to measure the short-term changes in inorganic carbon allocation into various macromolecular compounds (proteins, polysaccharides and lipids) throughout a diurnal cycle in the oligomesotrophic Lake Pavin (Massif Central of France) at the depths of 5, 15 and 30 m. Biochemical fractionation was done by consecutive differential extractions in order to separate proteins, polysaccharides, lipids and low molecular weight compounds (LMW) by virtue of their relative solubilities in different extraction solvents. Over the entire diurnal cycle inorganic carbon was preferentially incorporated into proteins (M = 30%), then into polysaccharides (M = 28%), LMWs (M = 27%) and lipids (M = 15%). However, at 5 m, diurnal variations were reflected by the high percentage of the inorganic carbon incorporated into polysaccharides during periods of high light intensity and decreased at dawn and dusk. The reverse pattern was observed for the allocation of inorganic carbon to proteins.     

Correlation between Carbonic Anhydrase Activity and Inorganic Carbon Internal Pool in Strain Synechocystis PCC 6174

Existence of an internal carbonic anhydrase was demonstrated in the cyanobacterium Synechocystis PCC 6714. The enzyme, present at a low specific activity, was inducible by limitation in inorganic carbon and inhibited both in vivo and in vitro by acetazolamide. The internal inorganic carbon pool as determined by mass spectrometry, was similarly modulated by the actual inorganic carbon growth regime; its building up was also sensitive to acetazolamide. A possible role of carbonic anhydrase in inorganic carbon metabolism regulation through the control of the dimension and nature of the inorganic carbon pool is discussed.     

Crassulacean acid metabolism in the context of other carbon-concentrating mechanisms in freshwater plants: a review

Inorganic carbon can be in short supply in freshwater relative to that needed by freshwater plants for photosynthesis because of a large external transport limitation coupled with frequent depleted concentrations of CO(2) and elevated concentrations of O(2). Freshwater plants have evolved a host of avoidance, exploitation and amelioration strategies to cope with the low and variable supply of inorganic carbon in water. Avoidance strategies rely on the spatial variation in CO(2) concentrations within and among lakes. Exploitation strategies involve anatomical and morphological features that take advantage of sources of CO(2) outside of the water column such as the atmosphere or sediment. Amelioration strategies involve carbon-concentrating mechanisms based on uptake of bicarbonate, which is widespread, C(4)-fixation, which is infrequent, and crassulacean acid metabolism (CAM), which is of intermediate frequency. CAM enables aquatic plants to take up inorganic carbon in the night. Furthermore, daytime inorganic carbon uptake is generally not inhibited and therefore CAM is considered to be a carbon-conserving mechanism. CAM in aquatic plants is a plastic mechanism regulated by environmental variables and is generally downregulated when inorganic carbon does not limit photosynthesis. CAM is regulated in the long term (acclimation during growth), but is also affected by environmental conditions in the short term (response on a daily basis). In aquatic plants, CAM appears to be an ecologically important mechanism for increasing inorganic carbon uptake, because the in situ contribution from CAM to the C-budget generally is high (18-55%).     

Effect of photon flux density on inorganic carbon accumulation and net CO2 exchange in a high-CO2-requiring mutant of Chlamydomonas reinhardtii

The effect of photon flux density on inorganic carbon accumulation and photosynthetic CO₂ assimilation was determined by CO₂ exchange studies at three, limiting CO₂ concentrations with a ca-1 mutant of Chlamydomonas reinhardiii. This mutant accumulates a large internal inorganic carbon pool in the light which apparently is unavailable for photosynthetic assimilation. Although steady-state photosynthetic CO₂ assimilation did not respond to the varying photon flux densities because of CO₂ limitation, components of inorganic-carbon accumulation were not clearly light saturated even at 1100 mol photons m^-2 s^-1, indicating a substantial energy requirement for inorganic carbon transport and accumulation. Steady-state photosynthetic CO₂ assimilation responded to external CO₂ concentrations but not to changing internal inorganic carbon concentrations, confirming that diffusion of CO₂ into the cells supplies most of the CO₂ for photosynthetic assimilation and that the internal inorganic carbon pool is essentially unavailable for photosynthetic assimilation. The estimated concentration of the internal inorganic carbon pool was found to be relatively insensitive to the external CO₂ concentration over the small range tested, as would be expected if the concentration of this pool is limited by the internal to external inorganic carbon gradient. An attempt to use this CO₂ exchange method to determine whether inorganic carbon accumulation and photosynthetic CO₂ assimilation compete for energy at low photon flux densities proved inconclusive.     

Nutrient limitation of phytoplankton in a naturally acidic lake (Lake Caviahue, Argentina)

As a result of a low pH, the inorganic carbon of acidic lakes is present as CO₂ at air-equilibrium concentration and is substantially lower than the inorganic carbon concentration in higher-pH waters with bicarbonate. This situation is quite common in artificially acidified lakes and where inorganic carbon is considered the limiting factor in phytoplankton growth. Apart from low inorganic carbon content, Lake Caviahue in Argentina has low nitrogen and high phosphorus content. The aim of this work was to assess the importance of inorganic carbon, phosphorus, and nitrogen, relating data on lake nutrients to phytoplankton species requirements. Lake samples taken in the 2004–2006 period did not show any particular trend in the vertical distribution of the water column of ammonium, inorganic carbon, and phosphorus with reference to either seasonality or depth. A decrease of some 15% in the lake’s phosphorus concentration was observed over the same period. Although the total phytoplankton biomass in Lake Caviahue was similar throughout the period, a seasonal variation was observed. Lab bioassays were carried out with solutions of bicarbonates, ammonium, nitrates, and phosphate. We worked with three species separately, namely, two chlorophytes, Keratococcus rhaphidioides and Watanabea sp.; and one euglenophyte, Euglena mutabilis. Answers to specific nutrient requirements differed for each algal species: both chlorophytes prefer ammonium or nitrates added on their own, whereas the euglenophyte registered a higher growth rate with the joint addition of ammonium and phosphorus. Even when the limiting nutrient(s) for phytoplankton yield and rate varied between species, we observed a tendency for nitrogen limitation in Lake Caviahue.     

Inorganic carbon uptake kinetics of the stream macrophyte Callitriche cophocarpa Sendt.

Photosynthetic carbon uptake of Callitriche cophocarpa Sendt. was examined in plants collected from six Danish streams and in plants grown under variable inorganic carbon conditions in the laboratory. Both field and laboratory plants showed a low affinity for inorganic carbon (CO₂ compensation points ranging from 0.7 to 22 μM, and K_0.5(CO₂) from 51 to 121 μM), consistent with C-3 photosynthesis and use of CO₂ alone. Variation in inorganic carbon uptake characteristics was low in both groups of plants. Only in laboratory-grown plants was a coupling found between carbon uptake and the inorganic carbon regime of the medium. The carbon extraction capacity, expressed as a percentage of the initial amount of dissolved inorganic carbon (DIC) assimilated in PH-drift experiments, increased from −1.4 to 11.8% with declining external carbon availability, and the initial slope of the CO₂ response curve increased from 6.4 to 15.3 g⁻¹ h⁻¹ dm³. The plasticity of the inorganic carbon uptake system of C. cophocarpa was very low compared to the plasticity observed for submerged macrophytes with accessory carbon uptake systems (i.e. HCO₃⁻ use or C-4 photosynthesis), suggesting that the plasticity of the C-3 photosynthetic apparatus as such is restricted. The low carbon affinity of C. cophocarpa indicates that this species depends on CO₂ oversaturation for a sufficient supply of CO₂ for photosynthesis and growth.     

A protein involved in co-ordinated regulation of inorganic carbon and glucose metabolism in the facultative photoautotrophic cyanobacteriumSynechocystis PCC6803

The involvement of a gene ofSynechocystis PCC6803,icfG, in the co-ordinated regulation of inorganic carbon and glucose metabolism, was established. TheicfG gene codes for a 72 kDa protein, which shows no homology with those registered in data libraries. Expression oficfG required glucose, the actual inducer probably being glucose-6-phosphate, and was independent of light and of the external inorganic carbon concentration. Mutants carrying an inactivated copy oficfG were constructed. Their growth characteristics were identical to those of the wild type under all regimes except in limiting inorganic carbon with glucose being present either before or after the transfer to the limiting conditions. These conditions completely prevented growth, both in the light and in the dark. The inhibition could be relieved by several intermediates of the tricarboxylic acid cycle. Assays of various enzymic activities related to inorganic carbon uptake and to its assimilationvia either the Calvin cycle or phosphoenolpyruvate carboxylase did not reveal the level of action of IcfG. Possible models include a blockage of the assimilation of both carbon sources in the absence of IcfG, or the inhibition of Ci incorporation route(s) essential under limiting inorganic carbon conditions, even when glucose is present, and even in the dark.     

A model for diurnal patterns of carbon fixation in a Precambrian microbial mat based on a modern analog

Microbial mat communities are one of the first and most prevalent biological communities known from the Precambrian fossil record. These fossil mat communities are found as laminated sedimentary rock structures called stromatolites. Using a modern microbial mat as an analog for Precambrian stromatolites, a study of carbon fixation during a diurnal cycle under ambient conditions was undertaken. The rate of carbon fixation depends primarily on the availability of light (consistent with photosynthetic carbon fixation) and inorganic carbon, and not nitrogen or phosphorus. Atmospheric PCO2 is thought to have decreased from 10 bars at 4 Ga (10(9) years before present) to approximately 10(-4) bars today, implying a change in the availability of inorganic carbon for carbon fixation. Experimental manipulation of levels of inorganic carbon to levels that may have been available to Precambrian mat communities resulted in increased levels of carbon fixation during daylight hours. Combining these data with models of daylength during the Precambrian, models are derived for diurnal patterns of photosynthetic carbon fixation in a Precambrian microbial mat community. The models suggest that, even in the face of shorter daylengths during the Precambrian, total daily carbon fixation has been declining over geological time, with most of the decrease having occurred during the Precambrian.     

Stable carbon isotope fractionations of the hyperthermophilic crenarchaeon Metallosphaera sedula

The stable carbon isotopic compositions of the inorganic carbon source, bulk cell material, and isoprenoid lipids of the hyperthermophilic crenarchaeon Metallosphaera sedula, which uses a 3-hydroxypropionate-like pathway for autotrophic carbon fixation, have been measured. Bulk cell material was approximately 3 per thousand enriched in 13C relative to the dissolved inorganic carbon, and 2 per thousand depleted in 13C relative to isoprenoid membrane lipids. The isotope data suggested that M. sedula uses mainly bicarbonate rather than CO(2) as inorganic carbon source, which is in accordance with a 3-hydroxypropionate-like carbon fixation pathway. To the best of our knowledge this is the first report of 13C fractionation effects of such a hyperthermophilic crenarchaeon.     

The interactive effects of light and inorganic carbon on aquatic plant growth

Submerged aquatic macrophytes grow across a wide, often coupled, range of light and inorganic carbon availabilities, and each single factor influences photosynthesis and acclimation. Here we examine the interactive effects of light and inorganic carbon on the growth of Elodea canadensis and Callitriche cophocarpa. The plants were grown in the laboratory at a range of light intensities (0–108 μmol m⁻²s⁻¹) and four inorganic carbon regimes in a crossed factorial design. Plant growth rates, measured over 3–4 weeks of incubation, increased in response to increasing light intensity and inorganic carbon availability, and significant interactive effects were observed. The light-use efficiency for growth at low light increased 2-fold for Callitriche and 6-fold for Elodea between the lowest and highest inorganic carbon concentrations applied. Also, the growth rate at the highest light intensity increased with inorganic carbon availability, but the relative increase was smaller than at low light. Both species acclimated to the light and carbon regime such that the chlorophyll content declined at low and high light intensities and the initial slopes of the photosynthetic CO₂ and HCO₃⁻ response curves declined at high levels of CO₂. Callitriche responded less markedly than Elodea to changing inorganic carbon availability during growth, and the initial slope of the photosynthetic HCO₃⁻ response curve, in particular, was greatly reduced (>90%) in Elodea by high CO₂. It is suggested that the coupled responses of aquatic macrophytes to light and inorganic carbon influence their ability to develop dense stands at high light in shallow water and to extend to greater depths in waters rich in inorganic carbon.     

Bicarbonate Utilization in Anabaena

Blue-green algal growth frequently occurs in water with relatively high pH and high levels of organic carbon which are related by the pH-dependent ionization of inorganic carbon. This relationship, which may regulate natural populations, was examined using a factorial experimental design in which the metabolic response of Anabaena flos-aquae was measured as a function of pH and total inorganic carbon. The concentration of the products of ionization were calculated. Algal responses were determined manometrically as rates of photosynthesis and respiration. The overriding factor regulating the growth of Anabaena was pH, and no obvious relationship was found to exist between oxygen evolution or uptake and the concentration of any form of inorganic carbon.     

长期施肥对红壤微生物生物量碳氮和微生物碳源利用的影响

采集湖南省祁阳县红壤长期定位施肥19年的土壤样品,分析长期不同施肥红壤的微生物生物量碳、氮和微生物碳源利用率,以揭示长期施肥对红壤微生物学性状的影响.结果表明：施肥19年后,有机肥单施或与化肥配合施用均显著提高土壤微生物生物量碳、氮和微生物碳源利用率.单施有机肥的土壤微生物生物量碳、氮含量分别为231和81 mg·kg^-1,化肥有机肥配施分别为148和73 mg·kg^-1,均显著高于化肥配施秸秆、不施肥和单施化肥;施用有机肥和化肥配施秸秆的土壤微生物生物量氮占全氮的比例平均为6.0%,显著高于单施化肥和不施肥.Biolog-ECO分析中,平均吸光值(AWCD)的大小为：化肥有机肥配施、单施有机肥>对照>单施化肥、化肥配施秸秆.单施有机肥或与化肥有机肥配施增加了红壤微生物对碳水化合物、羧酸、氨基酸、聚合物、酚类和胺类的碳源利用率;化肥配施有机肥的红壤微生物对聚合物类碳源利用率最高,化肥配施秸秆的红壤微生物对碳水化合物类碳源的利用率最高.表明施用有机肥能显著提高红壤的微生物生物量碳、氮和微生物碳源利用率,提高红壤肥力,保持作物高产.     

Nutrient availability affects the response of the calcifying chlorophyte Halimeda opuntia (L.) J.V. Lamouroux to low pH

Atmospheric carbon dioxide emissions cause a decrease in the pH and aragonite saturation state of surface ocean water. As a result, calcifying organisms are expected to suffer under future ocean conditions, but their physiological responses may depend on their nutrient status. Because many coral reefs experience high inorganic nutrient loads or seasonal changes in nutrient availability, reef organisms in localized areas will have to cope with elevated carbon dioxide and changes in inorganic nutrients. Halimeda opuntia is a dominant calcifying primary producer on coral reefs that contributes to coral reef accretion. Therefore, we investigated the carbon and nutrient balance of H. opuntia exposed to elevated carbon dioxide and inorganic nutrients. We measured tissue nitrogen, phosphorus and carbon content as well as the activity of enzymes involved in inorganic carbon uptake and nitrogen assimilation (external carbonic anhydrase and nitrate reductase, respectively). Inorganic carbon content was lower in algae exposed to high CO₂, but calcification rates were not significantly affected by CO₂ or inorganic nutrients. Organic carbon was positively correlated to external carbonic anhydrase activity, while inorganic carbon showed the opposite correlation. Carbon dioxide had a significant effect on tissue nitrogen and organic carbon content, while inorganic nutrients affected tissue phosphorus and N:P ratios. Nitrate reductase activity was highest in algae grown under elevated CO₂ and inorganic nutrient conditions and lowest when phosphate was limiting. In general, we found that enzymatic responses were strongly influenced by nutrient availability, indicating its important role in dictating the local responses of the calcifying primary producer H. opuntia to ocean acidification.