Morphological and molecular phylogenetic analysis of two Saprolegnia sp. (Oomycetes) isolated from silver crucian carp and zebra fish

Two Saprolegnia isolates, JY isolated from silver crucian carp (Carassius auratus gibelio Bloch) and BMY isolated from zebra fish (Brachydanio rerio Hamilton) came from infections occurring concurrently in different locations in China. To confirm whether the two isolates were from the same Saprolegnia clone, comparative studies have been carried out based on their morphological, physiological and molecular characteristics. Observations showed that morphologically (both asexual and sexual organs) the two isolates were broadly similar and both isolates underwent repeated zoospore emergence. Comparing 704 base pairs of internal transcribed spacer (ITS) region and the 5.8S rDNA, we found isolates JY and BMY shared an identical ITS sequence with a minor variation (99.6 % similarity). Forty available sequences for representatives Saprolegnia spp. belonged to four phylogenetically separate clades. The two studied isolates fell within clade I that comprised a group of isolates which showed almost an identical ITS sequence but had been identified as a number of different morphological species. Our findings suggest that isolates JY and BMY appear to belong to the S. ferax clade and this clade (I) contains a number of closely related phylogenetic species. This is distinct from the more common fish pathogenic isolates, which belong to the S. parasitica clade (III) and are characterized by having cysts decorated by bundles of long hooked hairs and two further clades (II and IV) containing largely saprotrophic or soil born species.     

Aquatic fungi of Iraq: Species of Saprolegnia

Five species of Saprolegnia have been isolated from the water samples obtained monthly from Shatt Al-Arab estuary from September, 1976 to August, 1977. These are S. ferax, S. anisospora, S. diclina, S. terrestris and S. parasitica. Out of 81 isolates 43 reached sexual maturity while 38 remained sterile. Maximum abundance was found during winter months while minimum in summer months.     

Identification of mutans streptococci with monoclonal antibodies

Mutans streptococci have been correlated with dental caries. The identification of the species within this group is still a problem. The characterization of a monoclonal antibody (Mab) OMVU10 against S. sobrinus as well as the isolation and characterization of Mabs against S. mutans (OMVU30 and OMVU31), S. cricetus (OMVU40) and mutans streptococci (OMVU2) is described. The epitope specificity for OMVU10 and OMVU31 was cell-wall antigen B in both cases although both Mabs recognized different species-specific epitopes. OMVU40 was cross reactive with Steptococcus sanguis taxon 3. All other Mabs were specific for one species. Using these Mabs, a key to the identification of mutans streptococci is developed. This key was tested for 85 wild type isolates of mutans streptococci and proved to be highly reliable and easy to perform.     

Diversity of viruses in Cryphonectria parasitica and C. nitschkei in Japan and China, and partial characterization of a new chrysovirus species

We surveyed native populations of the chestnut blight fungus, Cryphonectria parasitica, in Japan and China, and C. nitschkei, a sympatric species on chestnut trees in Japan, to learn more about the diversity of hypoviruses and other double-stranded (ds) RNA viruses. In a sample of 472 isolates of C. parasitica and 45 isolates of C. nitschkei from six prefectures in Japan, we found 27 containing one or more dsRNAs. Twelve isolates of C. parasitica and two isolates of C. nitschkei were infected with Cryphonectria hypovirus 1 (CHV-1); four of these 12 C. parasitica isolates also contained other dsRNAs that did not hybridize to CHV-1. In China, only one of 85 C. parasitica isolates was CHV-1-infected; no dsRNAs were detected in the other isolates from China. No other known hypoviruses were found in this study. However, we found two previously undescribed dsRNAs in Japan approximately 9 kb in size that did not hybridize to each other or to any known dsRNAs from C. parasitica. We also found three additional groups of dsRNAs, one of which represents the genome of a new member of the virus family Chrysoviridae and was found only in C. nitschkei; the other two dsRNAs were found previously in isolates of C. parasitica from Japan or China. The most significant result of this survey is the discovery of novel dsRNAs that can be characterized in future research.     

Effects of pH and temperature on growth ofSaprolegnia diclina andS. parasitica isolated from various sources

Saprolegnia diclina andS. parasitica isolated from three sources could germinate in strong acidic conditions. Growth ability correlated with the species of fungi rather than with the sources from which they were isolated.S.diclina isolates appeared to germinate at a pH condition as low as 3.5, whereasS. parasitica isolates could not germinate at below pH 3.8.S. parasitica isolates from visceral mycoses still showed good growth at 30°C, whereas other isolates did not. Also,S. parasitica isolates from visceral mycoses produced more abundant motile zoospores, and continued to do so for a longer period of time (28 d), thanS. parasitica isolates from external saprolegniasis andS. diclina isolates.     

Some biochemical characteristics of fungi isolated from salmonid eggs

Fungal isolates from salmonid eggs displayed apparently unique patterns of biochemical characteristics at both the generic and specific levels. of the five genera examinedAchlya andPythium were able to assimilate 13–16 out of 19 carbohydrates.Aphanomyces was able to assimilate only glucose and starch, which was assimilated by all isolates. Members ofSaprolegnia displayed identical patterns of carbohydrate assimilation, except forS. hypogyna, which was also able to assimilate melibiose, in common withAchlya, Pythium, andLeptolegnia. Pythium was the only genus capable of assimilating salicin. OnlyAchlya andP. monospermum were able to assimilate rhamnose. In terms of amino acid assimilation isolates ofSaprolegnia ferax andS. diclina displayed an identical patterns, as did isolates ofS. parasitica andS. hypogyna. OnlyAphanomyces frigidophilus isolate was capable of assimilating cysteine. All genera exceptPythium assimilated glutamine, a fundamental amino acid. All isolates exhibited lipase and fatty acid esterase activities but no cellulase acitivity. The biochemical characteristics discovered in this study offer possibilities for identification and classification of these fungi, which are discussed herein.     

Salinity tolerance of Saprolegnia parasitica coker

Experiments on two strains ofS. parasitica have shown that this species together with other species ofSaprolegnia have a high tolerance to salinity when vegetative growth alone is considered. The effect of temperature and salinity on asexual sporulation shows that at temperatures of up to 20°C good sporulation occurs in salinities of 3.5%.. At temperatures above this, sporulation is repressed and gammae tend to be formed. Temperature appears to have a marked effect on the initial germination of zoospores, but after 12 hours this effect is minimized.

---

Zusammenfassung Untersuchungen an zwei Stämmen vonS. parasitica haben gezeigt, daß diese Art, zusammen mit anderen Arten vonSaprolegnia, eine hohe Toleranz gegen Salinität hat, wenn das vegetative Wachstum allein in Betracht gezogen wird. Die Wirkung von Temperatur und Salinität an asexuellen Sporulation zeigt, daß bei Temperaturen bis zu 20°C eine gute Sporulation in einer Salinität von 3.5%. vorherrscht. Bei höheren Temperaturen wird Sporulation unterdrückt und bilden sich Gammae. Temperatur scheint eine bedeutende Wirkung an der initialen Germination von Zoosporen zu haben, jedoch ist diese Wirkung nach 12 Stunden minimal.

     

Molecular characterization and identification ofSaprolegnia by restriction analysis of genes coding for ribosomal RNA

Restriction fragment length polymorphisms (RFLPs) in two regions of the ribosomal DNA (rDNA) repeat unit were examined in 33 strains representing 18 species ofSaprolegnia. The Polymerase Chain Reaction (PCR) was used to separately amplify the 18S rDNA and the region spanning the two internal transcribed spacers (ITS) and the 5.8S ribosomal RNA gene. Amplified products were subjected to a battery of restriction endonucleases to generate various fingerprints. The internal transcribed spacer region exhibited more variability than the 18S rDNA and yielded distinctive profiles for most of the species examined. Most of the species showing 100% similarity for the 18S rDNA could be distinguished by 5.8S + ITS restriction polymorphisms except forS. hypogyna, S. delica, S. lapponica, andS. mixta. The rDNA data indicate thatS. lapponica andS. mixta are conspecific withS. ferax, whereas there is no support for the proposed synonymies ofS. diclina withS. delica and ofS. mixta withS. monoica. Results from cluster analysis of the two data sets were very consistent and tree topologies were the same, regardless of the clustering method used. A further examination of multiple strains in theS. diclina-S. parasitica complex showed that restriction profiles are conserved across different strains ofS. parasitica originating from the U.K. and Japan.HhaI andBsaI restriction polymorphisms were observed in isolates from the U.S. and India. The endonucleaseBstUI was diagnostic forS. parasitica, generating identical fingerprints for all strains regardless of host and geographic origin. Except for the atypical strain ATCC 36144, restriction patterns were also largely conserved inS. diclina. Correlation of the rDNA data with morphological and ultrastructural features showed thatS. diclina andS. parasitica are not conspecific. Restriction polymorphisms in PCR-amplified rDNA provide a molecular basis for the classification ofSaprolegnia and will be useful for the identification of strains that fail to produce antheridia and oogonia.     

Taxonomic and phylogenetic analysis of Saprolegniaceae (Oomycetes) inferred from LSU rDNA and ITS sequence comparisons

The aim of this study was to improve our knowledge about the taxonomy and phylogeny of the family Saprolegniaceae, a group of water molds including several pathogens of plants, fish and crustacea. ITS and LSU rDNA were sequenced for representatives of forty species corresponding to ten genera (Achlya, Aphanomyces, Brevilegnia, Dictyuchus, Leptolegenia, Plectospira, Pythiopsis, Saprolegnia, Thraustotheca). Phenetic and cladistic analyses were then carried out. The species Brevilegnia bispora does not appear to belong to the family Saprolegniaceae. Plectospira myrianda clusters with Aphanomyces spp. and they constitute an ancestral group. (Thraustotheca clavata is closely related to the eccentric species of the genus Achlya. The genus Achlya appears polyphyletic, corroborating more or less the three known subgroups, defined by their sexual spore type (eccentric, centric and subcentric). The achlyoid type of spore dehiscence, shared by Aphanomyces and Achlya genera, is shown to be an ancestral character. The saprolegnioid, dictyoid and thraustothecoid types of spore dehiscence are derived characters but their relative evolutionary positions are not resolved.     

Ophiostoma arduennense sp. nov. (Ophiostomatales, Ascomycota) from Fagus sylvatica in southern Belgium

Ophiostoma arduennense sp. nov. is described from several cultures isolated from Fagus sylvatica in southern Belgium. The species is mainly characterized by globose perithecia with small button-like bases ornamented with brown hyphal hairs of variable length and, long cylindrical necks ending in ostiolate hyphae. It is homothallic with small reniform ascospores and no apparent anamorph. It is closely associated with the ambrosia beetles Xyloterus domesticus and X. signatus. Its phylogenetic relationships within Ophiostoma are discussed and the species is compared with other Ophiostoma species associated with European beech or other broad-leaved trees in Europe, especially species of the O. quercus–O. piceae complex. The species is responsible for a dark brown staining of the sapwood and its role in the decline of beech in Southern Belgium is also discussed.     

Cryopreservation of three Saprolegnia species (Oomycota): Preliminary evidence for the long-term archiving of water mould species

Saprolegnia spp. water moulds are opportunistic pathogens that can cause economic losses to aquaculture. The diseases caused by them are difficult to control since use of the effective drug, malachite green oxalate, is no longer permitted in several regions (including the European Union and USA). To develop an effective control strategy, Saprolegnia isolates must be maintained in the laboratory. Cryopreservation is a useful solution for long-term maintenance; however, at present, there is no developed protocol for the cryopreservation of Saprolegnia spp. Here, we isolated and identified three Saprolegnia species, S. parasitica, S. australis and S. ferax, and developed a deep-freezing protocol that enables the long-term archiving of these species. The survival and growth rates of isolates kept at −80 °C for 3, 6, 9 and 12 months, were tested and compared among the species examined. Although the growth rates of frozen isolates were significantly lower than those of the control (i.e. non-frozen) isolates, the overall survival rate (>90%) indicated the effectiveness of the technique developed. Thus, the protocol developed appears to be a promising method for the long-term preservation of Saprolegnia isolates and may facilitate the creation of stock collections.     

An evolutionarily conserved nested gene pair — Mab21 and Lrba/Nbea in metazoan

The embedding of one gene in another as a nested gene pair is a unique phenomenon of gene clustering in the metazoan genome. A gene-centric paralogous genomic sequence comparison strategy was used in this study to align these paralogous nested pairs, Mab21l2-Lrba and Mab21l1-Nbea, to identify the associated paralogous non-coding elements (pNEs) they shared. A majority of these pNEs in the Mab21l2-Lrba locus display tissue-specific enhancer activities recapitulating the expression profiles of Mab21l2 and Mab21l1. Since these enhancers are spread into the introns of Lrba, dissociation of the two genes will likely disrupt the function of at least one of them. Phylogenetic analysis of this complex locus in different species suggests that Mab21 was probably locked in the Lrba/Nbea intron in the ancestral metazoan species, in which the cis-elements uncovered in this study may act as a selective force to prevent the dissociation of this gene pair in vertebrates.     

Prosthecium species with Stegonsporium anamorphs on Acer

Data from microscopic morphology, single-spore cultures, and DNA analyses of teleomorphs and anamorphs support the recognition of five species of Prosthecium with Stegonsporium anamorphs on Acer: P. acerinum sp. nov., the teleomorph of S. acerinum; P. acerophilum comb. nov., formerly known as Dictyoporthe acerophila; P. galeatum comb. nov., originally described as Massaria galeata; P. opalus sp. nov.; and P. pyriforme sp. nov., the teleomorph of S. pyriforme s. str. The morphology of both type specimens and freshly collected material was investigated. The teleomorphs have brown ellipsoidal ascospores with five distosepta and often a longitudinal distoseptum. The anamorphs of all species described here belong to Stegonsporium; their connection to the Prosthecium teleomorphs was demonstrated by morphology and DNA sequences of single spore cultures derived from both ascospores and conidia. The anamorphs and teleomorphs of all five Prosthecium species are described and illustrated by LM images, and a key to these species is provided. As perceived from this work, S. pyriforme is restricted to Europe and does not occur in North America, whereas S. acerinum is restricted to North America, not found in Europe. The host associations given in the literature are revised and evidence is provided that only A. opalus, A. pseudoplatanus, and A. saccharum are confirmed hosts of Prosthecium with Stegonsporium anamorphs. Molecular phylogenetic analyses of tef1, ITS rDNA, and partial nuLSU rDNA sequences confirm that the species with Stegonsporium anamorphs are closely related to P. ellipsosporum, the generic type species. Stilbospora macrosperma is confirmed as the anamorph of P. ellipsosporum by DNA data of single spore isolates obtained from both ascospores and conidia.     

中国黄耆属糙叶组叶表皮毛状体微形态学特征

采用体视显微镜和扫描电子显微镜,对中国产黄耆属糙叶组34种植物的叶表皮毛状体的形态特征及其分布进行了观察,以探讨中国黄耆属糙叶组物种表皮毛微观形态的变异式样及其分类学意义,为糙叶组物种的分类鉴定提供依据。结果表明：除乳白花黄耆（A. galactites）仅在叶下表面被毛外,其余种类上下表皮均有毛,且毛的分布、形态、长度和臂比在不同种类间存在差异。叶表皮毛为伏贴或开展的中空管状毛,伏贴毛着生部位基部膨大,整体形态从中部向两端由粗逐渐变细,开展的毛大部分为细长的丝状或线状,光滑或具条纹状纹饰,上面分布有乳突。研究认为,叶表皮表面伏贴、短而平直、其上光滑具密集乳突、臂比值小、整体宽扁的毛是祖先特征;而叶表皮表面向上开展、长而密集、外形呈丝状或线形、其上具条纹状纹饰、乳突稀疏、臂比值大的毛是进化特征。     

The effect of aluminium concentration on root hairs in white clover (Trifolium repens L.)

The effect of aluminium (Al) on root hair length and number is quantified using solution culture techniques with genotypes from white clover cultivar Tamar, that had previously been selected for long and short root hairs. The population differences were maintained in control (0 Al) treatments, with the long-haired population having hairs three times longer than the short-haired population. At an activity of 2.2 µM Al³⁺, root hair length decreased in both populations, the magnitude of the decrease being greater for the long-haired population. Root hair numbers decreased in a similar manner for both populations. At an activity of 4.4 µM Al³⁺ or higher, root hairs virtually disappeared and root growth was very stunted. The effect of Al on root hair development has not been previously quantified, however other workers have observed reduced root hair development in other species at activities of Al greater than 2.5 µM Al³⁺.     

Vigna mungo, V. radiata and V. unguiculata plants sampled in different agronomical–ecological–climatic regions of India are nodulated by Bradyrhizobium yuanmingense

Vigna mungo, Vigna radiata and Vigna unguiculata are important legume crops cultivated in India, but little is known about the genetic resources in native rhizobia that nodulate these species. To identify these bacteria, a core collection of 76 slow-growing isolates was built from root nodules of V. mungo, V. radiata and V. unguiculata plants grown at different sites within three agro-ecological-climatic regions of India. The genetic diversity of the bacterial collection was assessed by restriction fragment length polymorphism (RFLP) analysis of PCR-amplified DNA fragments of the 16S–23S rDNA intergenic spacer (IGS) region, and the symbiotic genes nifH and nodC. One rDNA IGS type grouped 91% of isolates, but more diversity was found at the symbiotic loci (17 symbiotic genotypes). Overall, no host plant specificity was shown, the three host plant species sharing common bradyrhizobial genotypes that represented 62% of the collection. Similarly, the predominant genotypes were found at most sampling sites and in all agro-ecological-climatic regions. Phylogenies inferred from IGS sequencing and multi-locus sequence analysis of the dnaK, glnII and recA genes indicated that all isolates but one were clustered with the Bradyrhizobium yuanmingense species. The nifH phylogeny also grouped the different nif haplotypes within a cluster including B. yuanmingense, except for one infrequent nif haplotype which formed a new lineage within the Bradyrhizobium genus. These results may reflect a long history of co-evolution between B. yuanmingense and Vigna spp. in India, while intra-species polymorphism detected in the symbiotic loci may be linked with the long history of diversification of B. yuanmingense coinciding with that of its host legumes.     

短丝绿绒蒿, 青海罂粟科一新种

该文描述了自青海南部发现的罂粟科绿绒蒿属一新种,短丝绿绒蒿。此种可能隶属琴叶绿绒蒿亚属,滇西绿绒蒿组,滇西绿绒蒿系,与此系其它种的区别在于此种的披针状条形花瓣,较少、较短的雄蕊(花丝长1～5 mm),无花柱的雌蕊,和被具短毛的硬毛的子房。     

New species of Phaeoramularia, Pseudocercospora and Stenella from Western Ghats of India

Four new species of the hyphomycete genera Phaeoramularia viz. Ph. caesalpinae, Pseudocercospora viz., Ps. tiliacearum, Stenella, viz. S. argyreiae and S. grewiae occurring on Caesalpinia bonducella Fleming (Caesalpiniaceae), Grewia sp. (Tiliaceae), Argyrea sp. Lour (Convolvulaceae) and Grewia sp. L. (Tiliaceae), respectively are described and illustrated here. All these fungi were collected from Western Ghats of India.     

An Electron Microscope Study of Cysts in the Saprolegniaceae

The structure of the zoospore cysts of various members of theSaprolegniaceae has been studied by electron microscopy. InSaprolegnia ferax, S. dioica, in Isoachlya eccentrica and I.unispora the primary cysts were smooth, whilst the secondarycysts bore stalked double-headed hooks. In S. parasitica thesecondary cysts bore tufts of longer hooks. In Protoachlya,Achlya, and Brevilegnia neither type of cyst bore hooks. InDictyuchus sterile the secondary cysts bore large spiny projections.The primary cysts in many species bore tufts of radiating hairs,and it is suggested that these are the remains of ciliated flagella.