The influence of biotic interactions on soil biodiversity

Belowground communities usually support a much greater diversity of organisms than do corresponding aboveground ones, and while the factors that regulate their diversity are far less well understood, a growing number of recent studies have presented data relevant to understanding how these factors operate. This review considers how biotic factors influence community diversity within major groups of soil organisms across a broad spectrum of spatial scales, and addresses the mechanisms involved. At the most local scale, soil biodiversity may potentially be affected by interactions within trophic levels or by direct trophic interactions. Within the soil, larger bodied invertebrates can also influence diversity of smaller sized organisms by promoting dispersal and through modification of the soil habitat. At larger scales, individual plant species effects, vegetation composition, plant species diversity, mixing of plant litter types, and aboveground trophic interactions, all impact on soil biodiversity. Further, at the landscape scale, soil diversity also responds to vegetation change and succession. This review also considers how a conceptual understanding of the biotic drivers of soil biodiversity may assist our knowledge of key topics in community and ecosystem ecology, such as aboveground–belowground interactions, and the relationship between biodiversity and ecosystem functioning. It is concluded that an improved understanding of what drives the diversity of life in the soil, incorporated within appropriate conceptual frameworks, should significantly aid our understanding of the structure and functioning of terrestrial communities.     

Linking biodiversity indicators,ecosystem functioning,provision of services and human well-being in estuarine systems: Application of a conceptual framework

Assuming that human well-being strongly relies on the services provided by well-functioning ecosystems, changes in the ecological functioning of any system can have direct and indirect effects on human welfare. Intensive land use and tourism have expanded in recent decades along coastal ecosystems, together with increasing demands for water, food and energy; all of these factors intensify the exploitation of natural resources. Many of the interrelations between ecosystem functioning and the provision of ecosystem services (ES) still require quantification in estuarine systems. A conceptual framework to assess such links in a spatially and temporally explicit manner is proposed and applied to the Mondego estuary (Portugal). This framework relies on three consecutive steps and discriminates among biodiversity structural components, ecosystem functioning and stability and the services provided by the ecosystem.Disturbances in abiotic factors were found to have a direct effect on biodiversity, ecosystem functioning and the provision of ES. The observed changes in the species composition of communities had a positive effect on the ecosystem's productivity and stability. Moreover, the observed changes in the estuarine ES provision are likely to arise from changing structural and abiotic factors and in the present case from the loss or decline of locally abundant species. This study also indicates that linear relationships between biodiversity, ecosystem functioning and services provision are unlikely to occur in estuarine systems. Instead, cumulative and complex relations are observed between factors on both temporal and spatial scales. In this context, the results suggest several additional conclusions: (1) biodiversity and ecosystem functioning interaction with human well-being need to be incorporated into decision-making processes aimed at the conservative management of systems; (2) the institutional use of research results must be part of the design and implementation of sustainable management activities; and (3) more integrative tools/studies are required to account for the interactions of estuarine ecosystems with surrounding socio-economic activities. Therefore, when performing integrated assessments of ecosystem dynamics, it becomes essential to consider not only the effects of biodiversity and ecosystem functioning on services provision but also the effects that human well-being and ES provision may have on estuarine biodiversity and ecosystem functioning.The proposed framework implies taking into account both the functional and the commodities points of view upon natural ecosystems and by this representing a line of thought which will deserve further research to explore more in detail the conceptual links between biodiversity–ecosystem functioning–services provided.     

Unifying sources and sinks in ecology and Earth sciences

The paired source and sink concepts are used increasingly in ecology and Earth sciences, but they have evolved in divergent directions, hampering communication across disciplines. We propose a conceptual framework that unifies existing definitions, and review their most significant consequences for the various disciplines. A general definition of the source and sink concepts that transcends disciplines is based on net flows between the components of a system: a source is a subsystem that is a net exporter of some living or non‐living entities of interest, and a sink is a net importer of these entities. Sources and sinks can further be classified as conditional and unconditional, depending on the intrinsic propensity of subsystems to either produce (source) or absorb (sink) a surplus of these entities under some (conditional) or all (unconditional) conditions. The distinction between conditional and unconditional sources and sinks, however, is strongly context dependent. Sources can turn into sinks, and vice versa, when the context is changed, when systems are subject to temporal fluctuations or evolution, or when they are considered at different spatial and temporal scales. The conservation of ecosystem services requires careful consideration of the source?sink dynamics of multiple ecosystem components. Our synthesis shows that source?sink dynamics has profound consequences for our ability to understand, predict, and manage species and ecosystems in heterogeneous landscapes.     

Successional theories

Succession is a fundamental concept in ecology because it indicates how species populations, communities, and ecosystems change over time on new substrate or after a disturbance. A mechanistic understanding of succession is needed to predict how ecosystems will respond to land-use change and to design effective ecosystem restoration strategies. Yet, despite a century of conceptual advances a comprehensive successional theory is lacking. Here we provide an overview of 19 successional theories (‘models’) and their key points, group them based on conceptual similarity, explain conceptual development in successional ideas and provide suggestions how to move forward. Four groups of models can be recognised. The first group (patch & plants) focuses on plants at the patch level and consists of three subgroups that originated in the early 20th century. One subgroup focuses on the processes (dispersal, establishment, and performance) that operate sequentially during succession. Another subgroup emphasises individualistic species responses during succession, and how this is driven by species traits. A last subgroup focuses on how vegetation structure and underlying demographic processes change during succession. A second group of models (ecosystems) provides a more holistic view of succession by considering the ecosystem, its biota, interactions, diversity, and ecosystem structure and processes. The third group (landscape) considers a larger spatial scale and includes the effect of the surrounding landscape matrix on succession as the distance to neighbouring vegetation patches determines the potential for seed dispersal, and the quality of the neighbouring patches determines the abundance and composition of seed sources and biotic dispersal vectors. A fourth group (socio-ecological systems) includes the human component by focusing on socio-ecological systems where management practices have long-lasting legacies on successional pathways and where regrowing vegetations deliver a range of ecosystem services to local and global stakeholders. The four groups of models differ in spatial scale (patch, landscape) or organisational level (plant species, ecosystem, socio-ecological system), increase in scale and scope, and reflect the increasingly broader perspective on succession over time. They coincide approximately with four periods that reflect the prevailing view of succession of that time, although all views still coexist. The four successional views are: succession of plants (from 1910 onwards) where succession was seen through the lens of species replacement; succession of communities and ecosystems (from 1965 onwards) when there was a more holistic view of succession; succession in landscapes (from 2000 onwards) when it was realised that the structure and composition of landscapes strongly impact successional pathways, and increased remote-sensing technology allowed for a better quantification of the landscape context; and succession with people (from 2015 onwards) when it was realised that people and societal drivers have strong effects on successional pathways, that ecosystem processes and services are important for human well-being, and that restoration is most successful when it is done by and for local people. Our review suggests that the hierarchical successional framework of Pickett is the best starting point to move forward as this framework already includes several factors, and because it is flexible, enabling application to different systems. The framework focuses mainly on species replacement and could be improved by focusing on succession occurring at different hierarchical scales (population, community, ecosystem, socio-ecological system), and by integrating it with more recent developments and other successional models: by considering different spatial scales (landscape, region), temporal scales (ecosystem processes occurring over centuries, and evolution), and by taking the effects of the surrounding landscape (landscape integrity and composition, the disperser community) and societal factors (previous and current land-use intensity) into account. Such a new, comprehensive framework could be tested using a combination of empirical research, experiments, process-based modelling and novel tools. Applying the framework to seres across broadscale environmental and disturbance gradients allows a better insight into what successional processes matter and under what conditions.     

山地景观生态学研究进展

山地环境对全球变化的高度敏感性及其在陆地淡水资源与生物资源方面的巨大影响,推动山地景观生态学迅猛发展。在系统分析2000年以来山地景观生态学文献计量基础上,针对山地景观生态学主要学科方向与科学问题,以山地垂直带谱结构分布模式与形成机制,山地景观生态功能的分布格局与驱动因素,山地景观生态结构与格局对全球变化的响应等三大领域为重点,综述了自2000年以来的主要研究进展和取得的新认识,归纳了每个领域现阶段存在的主要前沿问题。围绕上述山地景观生态学重点领域,提出了山地景观生态学未来重点发展的6个研究方向:全球山地环境变化综合观测网络与方法、山地多维景观生态格局与时空变化规律及其驱动机制、整合景观生态学方法的林线动态与机制研究、山地生物生产力和物种多样性变化与模拟、景观生态水碳耦合循环变化与影响、山地垂直带谱结构理论与模式等,为进一步推动山地景观生态学发展、准确理解山地环境对全球变化的响应规律及其影响提供理论参考。     

土壤呼吸作用时空动态变化及其影响机制研究与展望

测定不同陆地生态系统土壤呼吸速率及其时空波动, 阐明其影响因子, 对于全球碳素平衡预算和全球变化潜在效应估计是最为基本的数据。然而, 有关土壤呼吸作用变异性及其影响因素的知识仍存在局限性, 一些关键的过程和机制还有待阐明。该文综述了近年来土壤呼吸作用时空动态规律、影响机制和模拟方面的研究进展, 指出环境因子和生物因子共同驱动着土壤呼吸作用的时间动态变化; 土壤呼吸作用在不同时间尺度上还具有明显的空间异质性, 这主要是植被覆盖、根系分布、主要的环境因素和土壤特性空间分布的异质性造成的。生物因子是影响土壤呼吸作用时空动态变化的主要因素之一。然而, 目前所使用的土壤呼吸作用经验模型通常利用土壤温度、土壤湿度或者两者的交互作用模拟土壤呼吸作用动态变化, 但没有考虑生物因子的影响, 这可能会导致明显的偏差和错误。因此, 为了精确估算土壤呼吸作用, 必须解决土壤呼吸作用小尺度上的空间变异性; 加强不同时间尺度上生物要素对土壤呼吸作用动态变化的影响研究; 除了气候因子外, 土壤呼吸作用经验模型应该纳入生物因子等其它影响因素作为变量, 用以提高模型模拟的正确性和准确性。     

Incorporating the effects of changes in vegetation functioning and CO2 on water availability in plant habitat models

The direct effects of CO2 level changes on plant water availability are usually ignored in plant habitat models. We compare traditional proxies for water availability with changes in soil water (fAWC) predicted by a process-based ecosystem model, which simulates changes in vegetation structure and functioning, including CO2 physiological effects. We modelled current and future habitats of 108 European tree species using ensemble forecasting, comprising six habitat models, two model evaluation methods and two climate change scenarios. The fAWC models' projections are generally more conservative. Potential habitats shrink significantly less for boreo-alpine and alpine species. Changes in vegetation functioning and CO2 on plant water availability should therefore be taken into account in plant habitat change projections.     

Stability and synchrony across ecological hierarchies in heterogeneous metacommunities: linking theory to data

Understanding stability across ecological hierarchies is critical for landscape management in a changing world. Recent studies showed that synchrony among lower‐level components is key to scaling temporal stability across two hierarchical levels, whether spatial or organizational. But an extended framework that integrates both spatial scale and organizational level simultaneously is required to clarify the sources of ecosystem stability at large scales. However, such an extension is far from trivial when taking into account the spatial heterogeneities in real‐world ecosystems. In this paper, we develop a partitioning framework that bridges variability and synchrony measures across spatial scales and organizational levels in heterogeneous metacommunities. In this framework, metacommunity variability is expressed as the product of local‐scale population variability and two synchrony indices that capture the temporal coherence across species and space, respectively. We develop an R function ‘var.partition’ and apply it to five types of desert plant communities to illustrate our framework and test how diversity shapes synchrony and variability at different hierarchical levels. As the observation scale increased from local populations to metacommunities, the temporal variability of plant productivity was reduced mainly by factors that decreased species synchrony. Species synchrony decreased from local to regional scales, and spatial synchrony decreased from species to community levels. Local and regional species diversity were key factors that reduced species synchrony at the two scales. Moreover, beta diversity contributed to decreasing spatial synchrony among communities. We conclude that our new framework offers a valuable toolbox for future empirical studies to disentangle the mechanisms and pathways by which ecological factors influence stability at large scales.     

The Bryosphere: An Integral and Influential Component of the Earth’s Biosphere

A significant fraction of the Earth’s land surface is dominated by bryophytes. Research on carbon and nitrogen budgets of tundra, boreal, and peatland ecosystems has demonstrated the important role of mosses in understanding global change. Bryophytes are also habitat to a highly diverse microbiota that plays a key role in the function of these ecosystems. Here we define the term bryosphere to emphasize the combined role of mosses and their associated organisms in the functioning of ecosystems from local to global scales. In this minireview, we emphasize the value of the bryosphere as a spatially bounded, whole ecosystem that integrates aboveground and belowground processes, and we highlight the potential of the bryosphere as a natural model system (NMS) to assist in the study of environmental change on biodiversity and ecosystem functioning. We propose a formal definition of the bryosphere, attempt to summarize the current state of knowledge of the bryosphere, and discuss how the bryosphere can be a complex yet tractable system under an NMS framework. Recent use of the bryosphere as an NMS has shown how alterations in food web structure can affect ecosystem function in a manner that, although predicted by theory, has remained largely untested by experiment. An understanding of the biodiversity, ecosystem functioning, and adaptation of the bryosphere can be advanced by manipulative experiments coupled with a blend of techniques in molecular, physiological, community, and ecosystem ecology. Although studies described herein have demonstrated the utility of the bryosphere NMS for addressing ecological theory, the bryosphere is an underutilized system with exceptional promise.     

竞争-耐胁迫-杂草型植物对策理论及其应用研究进展

竞争-耐胁迫-杂草型植物(CSR)对策理论主要研究植物对环境胁迫和干扰的适应性特化。从功能生态学角度讲,CSR理论是通过解释各种功能性状协同变异的主导维度来反映植物的生态对策。而物种所采取的生态对策将决定其在群落中的生态位,并最终会影响生态系统过程与功能。自1974年Grime首次提出CSR对策的概念以来,CSR对策思想就受到了生态学家很大的关注,经过近半个世纪的发展,目前已经形成了比较完整的理论和研究方法体系。试图在回顾CSR理论及其研究方法发展的基础上,阐述其基本内涵,并重点从功能性状变异空间、植物适应性、群落过程和生态系统特性等4个方面概述CSR理论及其分析模型的验证及应用,梳理其最新研究进展。CSR理论已经得到了很多研究的广泛验证并应用于多种尺度上的植物生态学研究,但仍有一些方面值得进一步发展完善,如第四区缺失问题、功能性状变异主轴以外的变异、CSR对策与功能性状种内变异和谱系关系的联系等方面需要深入研究。     

干旱半干旱草地生态系统与土壤水分关系研究进展

研究干旱半干旱草地生态系统与土壤水分关系和相互作用机理对于揭示草地生态系统稳定性及其水土关键要素的变化过程具有重要意义。从不同界面、不同尺度综述了草地生态系统对土壤水分的影响及草地生态系统的响应与适应机制,总结了草地生态系统与土壤水分关系模型研究的相关进展,并分析了气候变化对草地生态系统和土壤水分关系的影响。草地生态系统通过影响水文过程和生态过程来影响土壤水分,土壤水分在植物生长发育、形态、生理生态过程、种间关系、群落组成和结构以及草地生态系统功能等方面对草地生态系统产生影响;充分揭示草地生态系统-土壤水分相互作用机理是模型研究的关键;气候变化对草地生态系统植物与土壤水分关系具有重要影响。今后应加强以下研究:1)开展草地不同优势种和植物功能型与土壤水分关系的研究,找出能反映植物对土壤水分响应的性状指标,阈值响应点及适应机制;2)注重对不同时间和空间尺度上的转换和比较;3)加强个体、群体和生态系统尺度草地植物生长模型的研究及其与土壤-植被-大气水分传输模型的耦合;4)加强草地生态系统与土壤水分关系对气候变化响应的研究。     

黄土高原植被建设与土壤干燥化:问题与展望

黄土高原大规模植被建设有效减少了水土流失、改善了区域生态环境,大规模人工植被种植也造成了土壤水分的过度消耗,导致了土壤干燥化,成为当前黄土高原生态恢复的重要制约因素,威胁区域生态系统健康与稳定。系统综述了黄土高原地区人工植被恢复对土壤干燥化的作用机制,植被群落特征与土壤干燥化的耦合关系,多尺度土壤干燥化时空分异规律及其影响因素,明确了当前大规模人工植被恢复过程中土壤水分持续利用面临的问题与挑战。建议今后加强植被动态对水文过程影响的研究,明确多尺度植被格局与土壤干燥化时空分异的耦合关系,系统开展变化环境下不同尺度植被与土壤水分相互作用的模拟研究,探讨基于植被格局优化的土壤水分调控机制,维护黄土高原地区土壤安全,提升区域生态系统服务功能。     

物种/功能群去除实验及其在生态学中的应用

随着物种多样性与生态系统功能的关系成为生态学领域研究的焦点之一,物种/功能群去除实验也逐渐得到了广泛的应用。物种/功能群去除实验在生态学中的应用主要包括以下研究内容:种间关系、多样性与生态系统功能关系、关键种的作用和功能、入侵种给生态系统带来的后果评价。针对去除实验的特点,提出去除实验应用中需要注意的若干问题,包括:"去除"行为本身对生态系统的影响、时间尺度在去除实验中对于研究结果的影响以及入侵种去除的特殊性。     

The importance of ecological memory for trophic rewilding as an ecosystem restoration approach

Increasing human pressure on strongly defaunated ecosystems is characteristic of the Anthropocene and calls for proactive restoration approaches that promote self‐sustaining, functioning ecosystems. However, the suitability of novel restoration concepts such as trophic rewilding is still under discussion given fragmentary empirical data and limited theory development. Here, we develop a theoretical framework that integrates the concept of ‘ecological memory’ into trophic rewilding. The ecological memory of an ecosystem is defined as an ecosystem's accumulated abiotic and biotic material and information legacies from past dynamics. By summarising existing knowledge about the ecological effects of megafauna extinction and rewilding across a large range of spatial and temporal scales, we identify two key drivers of ecosystem responses to trophic rewilding: (i) impact potential of (re)introduced megafauna, and (ii) ecological memory characterising the focal ecosystem. The impact potential of (re)introduced megafauna species can be estimated from species properties such as lifetime per capita engineering capacity, population density, home range size and niche overlap with resident species. The importance of ecological memory characterising the focal ecosystem depends on (i) the absolute time since megafauna loss, (ii) the speed of abiotic and biotic turnover, (iii) the strength of species interactions characterising the focal ecosystem, and (iv) the compensatory capacity of surrounding source ecosystems. These properties related to the focal and surrounding ecosystems mediate material and information legacies (its ecological memory) and modulate the net ecosystem impact of (re)introduced megafauna species. We provide practical advice about how to quantify all these properties while highlighting the strong link between ecological memory and historically contingent ecosystem trajectories. With this newly established ecological memory–rewilding framework, we hope to guide future empirical studies that investigate the ecological effects of trophic rewilding and other ecosystem‐restoration approaches. The proposed integrated conceptual framework should also assist managers and decision makers to anticipate the possible trajectories of ecosystem dynamics after restoration actions and to weigh plausible alternatives. This will help practitioners to develop adaptive management strategies for trophic rewilding that could facilitate sustainable management of functioning ecosystems in an increasingly human‐dominated world.     

干旱区生态系统稳态转换及其预警信号——基于景观格局特征的识别方法

在日益加剧的气候变化和土地开垦、放牧等人类活动干扰下,具有多稳态特征的干旱区生态系统可能会经历从相对健康状态到退化状态的稳态转换,导致生态系统的功能下降。早期预警信号的识别是生态系统稳态转换研究的热点,也是管理实践中防止生态系统退化的关键环节。以往预警信号研究聚焦于通用信号如自相关性、方差等统计学指标,然而这些指标对于具有特定机制的干旱区生态系统可能并不适用。基于干旱区景观格局特征所发展起来的空间指标为生态系统稳态转换提供了独特的空间视角,对于理解干旱区生态系统退化过程和机理具有科学意义和实践价值。介绍了干旱区生态系统稳态转换现象及其转换机制;聚焦景观生态学的指标和方法,从空间视角总结基于干旱区景观格局特征的关键预警指标(植被覆盖度、植被斑块形态、植被斑块大小频率分布和水文连通性等),重点剖析这些关键指标的概念、量化方法、识别特征及其实践应用;最后针对指标的优势和局限性对未来的研究方向进行展望,包括发掘潜在景观指标,加强干旱区生态系统变化的多种驱动要素的相互作用机制研究,开展多时空尺度的实证研究,构建生态系统稳态转换预警信号的整体分析框架,以及加强指标阈值的量化研究等方面。     

Temporal changes in soil C‐N‐P stoichiometry over the past 60 years across subtropical China

Controlled experiments have shown that global changes decouple the biogeochemical cycles of carbon (C), nitrogen (N), and phosphorus (P), resulting in shifting stoichiometry that lies at the core of ecosystem functioning. However, the response of soil stoichiometry to global changes in natural ecosystems with different soil depths, vegetation types, and climate gradients remains poorly understood. Based on 2,736 observations along soil profiles of 0–150 cm depth from 1955 to 2016, we evaluated the temporal changes in soil C‐N‐P stoichiometry across subtropical China, where soils are P‐impoverished, with diverse vegetation, soil, and parent material types and a wide range of climate gradients. We found a significant overall increase in soil total C concentration and a decrease in soil total P concentration, resulting in increasing soil C:P and N:P ratios during the past 60 years across all soil depths. Although average soil N concentration did not change, soil C:N increased in topsoil while decreasing in deeper soil. The temporal trends in soil C‐N‐P stoichiometry differed among vegetation, soil, parent material types, and spatial climate variations, with significantly increased C:P and N:P ratios for evergreen broadleaf forest and highly weathered Ultisols, and more pronounced temporal changes in soil C:N, N:P, and C:P ratios at low elevations. Our sensitivity analysis suggests that the temporal changes in soil stoichiometry resulted from elevated N deposition, rising atmospheric CO₂ concentration and regional warming. Our findings revealed that the responses of soil C‐N‐P and stoichiometry to long‐term global changes have occurred across the whole soil depth in subtropical China and the magnitudes of the changes in soil stoichiometry are dependent on vegetation types, soil types, and spatial climate variations.     

红树林湿地模型研究进展

红树林是位于海岸潮间带的森林湿地生态系统,具有抗风削浪、保护堤岸、封存CO2缓解全球气候变化等多种功能。然而,由于地理位置及生存环境特殊,红树林湿地模型的研究相对内陆湿地滞后。为了推动红树林湿地模型的研究,本文将目前常见红树林湿地模型按功能划分为植被生长生产模型、水文模型、物流能流模型三类,以阐述相关模型研究的进展,并对目前红树林湿地模型研究提出几点看法:(1)现有红树林湿地模型在不同区域、尺度下运行的有效性有待进一步验证;(2)国内对红树林生态系统服务及植被恢复工作相关模型研究较少,今后需加强该方面的研究。     

Observed and modelled historical trends in the water‐use efficiency of plants and ecosystems

Plant water‐use efficiency (WUE, the carbon gained through photosynthesis per unit of water lost through transpiration) is a tracer of the plant physiological controls on the exchange of water and carbon dioxide between terrestrial ecosystems and the atmosphere. At the leaf level, rising CO₂ concentrations tend to increase carbon uptake (in the absence of other limitations) and to reduce stomatal conductance, both effects leading to an increase in leaf WUE. At the ecosystem level, indirect effects (e.g. increased leaf area index, soil water savings) may amplify or dampen the direct effect of CO₂. Thus, the extent to which changes in leaf WUE translate to changes at the ecosystem scale remains unclear. The differences in the magnitude of increase in leaf versus ecosystem WUE as reported by several studies are much larger than would be expected with current understanding of tree physiology and scaling, indicating unresolved issues. Moreover, current vegetation models produce inconsistent and often unrealistic magnitudes and patterns of variability in leaf and ecosystem WUE, calling for a better assessment of the underlying approaches. Here, we review the causes of variations in observed and modelled historical trends in WUE over the continuum of scales from leaf to ecosystem, including methodological issues, with the aim of elucidating the reasons for discrepancies observed within and across spatial scales. We emphasize that even though physiological responses to changing environmental drivers should be interpreted differently depending on the observational scale, there are large uncertainties in each data set which are often underestimated. Assumptions made by the vegetation models about the main processes influencing WUE strongly impact the modelled historical trends. We provide recommendations for improving long‐term observation‐based estimates of WUE that will better inform the representation of WUE in vegetation models.     

Riparian vegetation: degradation, alien plant invasions, and restoration prospects

Rivers are conduits for materials and energy; this, the frequent and intense disturbances that these systems experience, and their narrow, linear nature, create problems for conservation of biodiversity and ecosystem functioning in the face of increasing human influence. In most parts of the world, riparian zones are highly modified. Changes caused by alien plants — or environmental changes that facilitate shifts in dominance creating novel ecosystems — are often important agents of perturbation in these systems. Many restoration projects are underway. Objective frameworks based on an understanding of biogeographical processes at different spatial scales (reach, segment, catchment), the specific relationships between invasive plants and resilience and ecosystem functioning, and realistic endpoints are needed to guide sustainable restoration initiatives. This paper examines the biogeography and the determinants of composition and structure of riparian vegetation in temperate and subtropical regions and conceptualizes the components of resilience in these systems. We consider changes to structure and functioning caused by, or associated with, alien plant invasions, in particular those that lead to breached abiotic‐ or biotic thresholds. These pose challenges when formulating restoration programmes. Pervasive and escalating human‐mediated changes to multiple factors and at a range of scales in riparian environments demand innovative and pragmatic approaches to restoration. The application of a new framework accommodating such complexity is demonstrated with reference to a hypothetical riparian ecosystem under three scenarios: (1) system unaffected by invasive plants; (2) system initially uninvaded, but with flood‐generated incursion of alien plants and escalating invasion‐driven alteration; and (3) system affected by both invasions and engineering interventions. The scheme has been used to derive a decision‐making framework for restoring riparian zones in South Africa and could guide similar initiatives in other parts of the world.