Genetic diversity in populations of a freshwater ciliate

RAPD fingerprinting with nine different primers revealed that all of 18 E. aediculatus isolates from nine ponds and streams in western Germany, France and the U.S.A. were genetically different. The extent of genetic similarity between genotypes from different waters did not show a significant relationship with the geographical distance among habitats, although genotypes isolated from the same habitat showed a higher genetic similarity than genotypes isolated from different habitats. Phylogenetic analyses of RAPD patterns indicate a separation of E. aediculatus strains into subgroups within one species, but all strains were genetically more similar to one another than to strains from two other Euplotes species. Crossings of the different E. aediculatus strains revealed they belonged to seven mating types of one gene pool. The high genetic diversity observed is explained by a frequent occurrence of conjugation in the studied populations.     

Effects of sampling and sub-sampling variation using the STAR-AQEM sampling protocol on the precision of macroinvertebrate metrics

As part of the extensive field sampling programme within the European Union STAR project, replicate macroinvertebrate samples were taken using the STAR-AQEM sampling method at each of 2–13 sites of varying ecological quality within each of 15 stream types spread over 12 countries throughout Europe. The STAR-AQEM method requires the sub-sampling and taxonomic identification of at least one-sixth of the sample and at least 700 individuals. Replicate sub-samples were also taken at most of these sites. Sub-sampling effects caused more than 50% of the overall variance between replicate samples values for 12 of the 27 macroinvertebrate metrics analysed and was generally greatest for metrics that depend on the number of taxa present. The sampling precision of each metric was estimated by the overall replicate sampling variance as a percentage P_samp of the total variance in metric values within a stream type. Average over all stream types, the three Saprobic indices had the lowest percentage sampling variances with median values of only 3–6%. Most of the metrics had typical replicate sampling variances of 8–18% of the total variability within a stream type; this gives rise to estimated rates of mis-classifying sites to ecological status class of between 22 and 55% with an average of about 40%. This suggests that the precision of such metrics based on the STAR-AQEM method is only sufficient to indicate gross changes in the ecological status of sites, but there will be considerable uncertainty in the assignment of sites to adjacent status classes. These estimates can be used to provide information on the effects of STAR-AQEM sampling variation on the expected uncertainty in multi-metric assessments of the ecological status of sites in the same or similar stream types, where only one sample has been taken at a point in time and thus there is no replication.     

Localization of centrins in the hypotrich ciliate Paraurostyla weissei

Centrins are ubiquitous cytoskeletal proteins that are generally associated with the centrosome and form large cytoskeletal networks in protists. To obtain more data on the respective role of different centrin proteins, we studied their distribution and behavior in one ciliate species, Paraurostyla weissei, using specific antibodies. In this species, only two major proteins of 21 and 24 kDa corresponding to centrins, were identified by 1D and 2D electrophoresis. Immunofluorescence analysis showed that these two proteins displayed non-overlapping localization in the interphase cell and during morphogenesis. Both centrin proteins localize on the fibrous network linking the oral basal bodies in the interphase cell and in the form of marginal dots, which correspond to the proximal ends of the striated rootlets; the 21 kDa centrin was also detected within the basal bodies, whereas the 24 kDa centrin allowed identifying new structures, the frontal dashes. During morphogenesis, the 21 kDa centrin locates at the basal bodies, while the 24 kDa centrin is detected along the striated rootlets and in close association with the basal bodies pairs. These data are discussed in terms of the potential roles of the two centrins in different cellular functions.     

Studies on the in vitro cultivation of ciliate protozoa from the kangaroo forestomach

The methods used for culturing rumen protozoa were found to be unsatisfactory for growth of ciliate protozoa from the kangaroo forestomach. Based on published measurements of physical parameters in the marsupial forestomach, several modifications were incorporated into the procedure, i.e., an increase in % hydrogen in the gas phase, adjustment of initial pH of the medium to 6.9–7.0 range, feed only forage as a substrate and incubate at a lower temperature (33–36 °C). Only incubation at the lower temperature increased survival time of the kangaroo protozoa. Two species of Bitricha were still viable after 28 d in culture. Cultures had to be terminated at that time. One of the species differed considerably in size and shape from previously described species and based on 18S rRNA data, may represent a new species of Bitricha. The second species, present in low numbers was identified as Bitricha oblata. In a separate trial, Macropodinium yalanbense survived for 11 d, at which time these cultures also had to be terminated.     

Estimation of the size of the vCJD epidemic

Estimates of the final size of the variant Creuzfeldt-Jakob Disease epidemic have been made by fitting theoretical curves of the incubation period distribution to the histogram of observed annual deaths to 2002, using various assumptions of the mean and standard deviation of this distribution, and also of the efficacy of the Specified Bovine Offals ban of 1989. Unless the mean incubation time is greater than 15 to 20 years the estimates lie in the low hundreds to about a thousand, and the most likely situation, of a mean between 11 and 15 years, gives estimates of about 150 to 500 deaths. Numbers above a few thousands would only occur if the mean incubation period is of the order of 25 to 30 years and reasons are adduced to indicate this is very unlikely. These numbers are not greatly increased if the ban was poorly observed. This method of analysis may be applicable to other situations where a cause that is limited in space and time is expected to have late effects.     

The effect of predator and prey density on the induced defence of a ciliate

1. The level of antipredator defence should be proportional to the actual attack probability to minimize the cost of defence and maximize the net benefit.
2. The hypothesis that the induced antipredator morphology of Euplotes octocarinatus is a graded response to the actual risk of predation by Stylonychia mytilus was tested by manipulating the density of both prey and predator populations.
3. The magnitude of the response was graded according to both predator and prey density. A dense prey population may be protective since a prey is more exposed to a predator's attack as a solitary individual.
4. The results suggest that Euplotes is able to 'estimate' the real risk of predation and respond appropriately, without mobilizing more resources than needed.
5. Separation of the prey and predator with a nylon net revealed that the response was not induced by a water-transmitted factor but that direct cell-to-cell contacts were important. This finding departs from those of other studies.     

Non-specific activation of mouse peritoneal macrophages by a freshwater ciliate, Tetrahymena pyriformis

Toxoplasma-killing activities of mouse peritoneal macrophages activated by the extracts of Tetrahymena pyriformis (Korean and Chinese strains) were evaluated, and the active protein fractions from both strains were partially characterized by a method including chromatographies and SDS-PAGE. The first peak in Korean strain and the second peak in Chinese strain of T. pyriformis obtained by DEAE-Sephadex A-50 chromatography were most effective in the activation of macrophages to kill Toxoplasma gondii tachyzoites in vitro. Subsequent fractionations of obtained peak fractions were performed on a Sephadex G-200 gel. The first peaks fractionated from both strains of T. pyriformis had the highest toxoplasmacidal activities, and when subjected to the SDS-PAGE, one prominent band was visualized for each of the strains showing the same molecular weight of ca. 52.6 kDa. This active protein is suggested to be related to non-specific activation of mouse peritoneal macrophages.     

Grazing rates of the freshwater ciliate Balanion planctonicum determined by flow cytometry

Feeding of Balanion planctonicum on the cryptomonad Rhodomonassp. was recorded in vivo at 2–3 min intervals by flowcytometry. Ingestion rates were 1.6–1.7 algal cells ciliate^–1h^–1. On average, 20–30 min elapsed between ingestionand egestion.     

食物浓度对角突臂尾轮虫种群增长、个体大小和卵大小的影响

以蛋白核小球藻为食物 ,应用群体累积培养法研究了食物浓度对角突臂尾轮虫种群增长、个体大小和卵大小等的影响 .结果表明 ,食物浓度对角突臂尾轮虫种群增长率、个体大小和卵大小均有极显著影响 .其中 ,轮虫种群增长率与食物浓度间呈曲线相关 ;当食物浓度为 8.2 4 5 3× 10 6cells·ml-1时 ,种群增长率达最大值 0 .6 0 85d-1;在所研究的食物浓度范围内 ,轮虫个体具有随食物浓度的增大而增大的趋势 ,轮虫卵体积在中等食物浓度范围 (6 .0× 10 6～ 9.0× 10 6cells·ml-1)时较大     

Live sieving of freshwater zooplankton: a technique for monitoring community size structure

A simple method is described for a quick determination of thesize structure of zooplankton communities. This is based onsieving of a live sample, using one or two sieves of known meshsize, and determining the dry weight of the size fractions.Size separation by live sieving is validated statistically onDaphnia galeata, a common planktonic cladoceran, by comparingsize-sieved fractions against direct microscopic measurementsof individuals. A non-linear model was used for assessment ofsieving statistics. The sieving technique facilitates the gatheringof size-structured biomass data for zooplankton for routinemonitoring or long-term studies.     

Warming alters the size spectrum and shifts the distribution of biomass in freshwater ecosystems

Organism size is one of the key determinants of community structure, and its relationship with abundance can describe how biomass is partitioned among the biota within an ecosystem. An outdoor freshwater mesocosm experiment was used to determine how warming of～4 °C would affect the size, biomass and taxonomic structure of planktonic communities. Warming increased the steepness of the community size spectrum by increasing the prevalence of small organisms, primarily within the phytoplankton assemblage and it also reduced the mean and maximum size of phytoplankton by approximately one order of magnitude. The observed shifts in phytoplankton size structure were reflected in changes in phytoplankton community composition, though zooplankton taxonomic composition was unaffected by warming. Furthermore, warming reduced community biomass and total phytoplankton biomass, although zooplankton biomass was unaffected. This resulted in an increase in the zooplankton to phytoplankton biomass ratio in the warmed mesocosms, which could be explained by faster turnover within the phytoplankton assemblages. Overall, warming shifted the distribution of phytoplankton size towards smaller individuals with rapid turnover and low standing biomass, resulting in a reorganization of the biomass structure of the food webs. These results indicate future environmental warming may have profound effects on the structure and functioning of aquatic communities and ecosystems.     

Effective size of harvested ungulate populations

The harvest of ungulate populations is often directed against certain sex or age classes to maximize the yield in terms of biomass, number of shot animals or number of trophies. Here we examine how such directional harvest affects the effective size of the population. We parameterize an age-specific model assumed to describe the dynamics of Fennoscandian moose. Based on expressions for the demographic variance     for a small subpopulation of heterozygotes Aa bearing a rare neutral allele a , we use this model to calculate how different harvest strategies influence the effective size of the population, given that the population remains stable after harvest. We show that the annual genetic drift, determined by     , increases with decreasing harvest rate of calves and increasing sex bias in the harvest towards bulls 1 year or older. The effective population size per generation decreased with reduced harvest of calves and increased harvest of bulls 1 year or older. The magnitude of these effects depends on the age-specific pattern of variation in reproductive success, which influences the demographic variance. This shows that the choice of harvest strategy strongly affects the genetic dynamics of harvested ungulate populations.     

Differences in offspring size predict the direction of isolation asymmetry between populations of a placental fish

Crosses between populations or species often display an asymmetry in the fitness of reciprocal F₁ hybrids. This pattern, referred to as isolation asymmetry or Darwin''s Corollary to Haldane''s Rule, has been observed in taxa from plants to vertebrates, yet we still know little about which factors determine its magnitude and direction. Here, we show that differences in offspring size predict the direction of isolation asymmetry observed in crosses between populations of a placental fish, Heterandria formosa. In crosses between populations with differences in offspring size, high rates of hybrid inviability occur only when the mother is from a population characterized by small offspring. Crosses between populations that display similarly sized offspring, whether large or small, do not result in high levels of hybrid inviability in either direction. We suggest this asymmetric pattern of reproductive isolation is due to a disruption of parent–offspring coadaptation that emerges from selection for differently sized offspring in different populations.     

Breeding ecology and male spawning success in two hill-stream populations of the freshwater goby,Padogobius martensi

Synopsis This investigation was carried out at two study sites to examine the influence of shelter availability, nest site quality and male body size on spawning success of malePadogobius martensi. At Stirone Stream (first study site) individuals were not randomly distributed with respect to usable stones; larger males and females were consistently found to occupy larger stones. Laboratory experiments showed that the bottom surface area of the shelter was the relevant cue for the choice. The number of nesting males settled in a given area increased with increasing availability of local stone cover; inter-nest distance was directly correlated with male size. At Rivarolo Stream (second study site), which was characterized by lower nest density and a greater shortage of large stones, the pattern of shelter occupation was similar. These results suggest the presence of competition among individuals for the possession of larger-sized shelter sites. At both sites, the number of eggs in the nest increased as stone size increased; however, at the first study site, male body size played a major role in male spawning success as it concerns both the numbers of females mated and the number of eggs, while at the second study site, male body size was not shown to influence male spawning success. Factors responsible for between-site differences in male spawning success are discussed.     

Estimation of the canopy-gap size using two photographs taken at different heights

A new, convenient method to estimate canopy-gap size using a camera is proposed. Canopy-gap size was estimated from two images taken with a vertically mounted, digital camera at high and low points (P_h and P_l) beneath a canopy gap. The actual (A_OBS) and estimated (A_1.0) canopy-gap sizes were highly correlated (R² > 0.93) for 16 canopy gaps in the Cryptomeria japonica D. Don. plantations, and the relationship between A_1.0 and A_OBS was expressed as A_1.0 = 1.16A_OBS. Thus, the method overestimated actual canopy-gap size by an average of 16%.     

Granule size affects the acetyl substitution on amylopectin populations in potato and sweet potato starches

Specific enzymatic degradation in combination with chromatographic and spectrometric techniques was used to understand acetyl group distribution over the amylopectin populations of differently sized granule fractions from potato and sweet potato starches. The hydrolysates obtained after -amylase, ß-amylase, pullulanase, and the combination of pullulanase, -amylase and amyloglucosidase treatment were investigated by high-performance size-exclusion chromatography (HPSEC), high-performance anion-exchange chromatography (HPAEC) and Maldi-Tof-MS (Matrix-Assisted Laser Desorption/Ionisation Time-Of-Flight Mass Spectrometry). The acetyl groups were found to be located near the branching point, in the external chain and in the internal chain regions. The acetyl group distributions were different for amylopectin from different granule size fractions. Higher DP (degree of polymerization) fragments were present in the digests of acetylated amylopectin populations of the small size granule starches. Our studies confirmed that acetyl groups were unevenly distributed over the amylopectin populations.     

Range size and environmental calcium requirements of British freshwater gastropods

Calcium is an essential requirement for the successful growth and development of gastropod molluscs. Data for British freshwater gastropods were used to examine the relationship between environmental calcium requirements and British and European range sizes. At both spatial scales calciphile species, which require a high level of environmental calcium, had significantly smaller range sizes than species able to exploit a wide range of environmental calcium levels. However, at least in Britain, range size may also be influenced by the availability of suitable habitat. British and European range sizes were significantly correlated. This study provides evidence for niche‐based explanations of range size variation, and suggests that both niche breadth and niche availability are important in determining range size.     

Egg size manipulation: a technique for investigating maternal effects on the hatching characteristics of herring

A technique was developed for manipulating egg size of recently fertilized Atlantic herring Clupea harengus embryos. Larvae hatching from eggs with reduced yolk volume were shorter than predicted for the volume of yolk removed. The reduction in both body and yolk mass of hatchlings was less than predicted, partly because larval yolk-sac mass was unaffected by yolk removal.