Study of a translocation in tetraploid rye

Colchicine induced tetraploids (4x=28) from diploidSecale cereale heterozygous for a translocation showed a strong tendency of non-preferential pairing for the interchanged chromosomes. The normal chromosomes associated in configurations up to quadrivalents, and the translocation complex formed multivalents up to octavalents. Most of the interchanged chromosome associations were characterized by their heteromorphic nature. The percentage of the chromosomes in the interchange complex forming multivalent associations was far higher than that of the remaining twenty chromosomes. Abnormalities were observed at anaphase I and II in the pollen mother cells. The tetraploids appeared to be completely sterile. It is suggested that the high frequency of multivalent formation may be explained on the basis that the interchange might have involved a region of localized chiasmata. The absence of polyploidy in the genusSecale as against its widespread occurrence in the related grass genera may be accounted for, in part, on the basis of non-preferential pairing.     

Chromosome behaviour and fertility of the raw and evolved synthetic tetraploids of pearl millet,Pennisetum typhoides stapf et hubb.

The effect of colchicine-induced chromosome doubling on phenotypic characters of Pearl millet,Pennisetum typhoides, is described and the mutagenic effect of colchicine preliminarily indicated.Meiosis in the raw tetraploids was characterized by a high frequency of multivalents, mostly quadrivalents. The evolutionary implication of the occurrence of multivalents higher than quadrivalents is discussed.When the synthetic autototraploids were carried through C₆, a shift from a multivalent to a bivalent type of association was noticed, and some of the quadrivalents formed in the C₅ and C₆ generations appeared to be loosely associated. It is suggested that structural divergence of the chromosomes combined with genetic factors may jointly be the cause. Evolutionary and breeding consequences are discussed. With the acquisition of a predominantly bivalent type of meiotic association, seed setting in the tetraploids improved. The relative roles of meiotic abnormalities and genetic factors in bringing about seed sterility in the tetraploids are considered.Cytological instability resulted in aneuploids and diploids in the progeny. Factors which may predispose a tetraploid taxon to cytological instability are discussed. It has been suggested that the secondarily diploid nature of Pearl millet may contribute to the cytological instability of its tetraploids.Preliminary observations on three trisomics and one monosomic, isolated in this study for the first time, are recorded. It was interesting to note that a monosomic plant of Pearl millet could survive up to maturity. This observation would further suggest that Pearl millet is not a true diploid but a secondarily balanced species with its phyletically basic number less thanx=7, as earlier inferred by the author from several evidences published elsewhere.     

Chromosome association and fertility in tetraploid ryegrass

In colchicine treated diploid ryegrass,Lolium perenne L. (2n=14), in addition to normal diploids, tetraploids and mixoploids, cytologically aberrant plants were observed. The latter included one aneuploid (2n=25), four translocation heterozygotes (diploid and mixoploid), and one mixoploid desynaptic plant which was a chimera of normal and desynaptic tissues as shown by successive clonal propagations. The normal diploids had chromosome association of 7 II, with an average chiasmata frequency of 12 per pollen mother cell and had 85.6 per cent pollen fertility. The tetraploids showed a mean chromosome association of 0.88 I, 4.83 II, 0.29 III and 3.91 IV, with an average chiasmata frequency of 25 per microsporocyte, and had 83.8 per cent fertile pollen. In the tetraploids, pollen fertility was negatively correlated with quadrivalent frequency and positively so with bivalent and trivalent frequencies, there being no significant correlation with univalent frequency. Among the most frequent types of quadrivalents, only the alternate chain quadrivalent frequency was positively correlated (r=+.9297) with the plllen fertility. On this basis, an increased pollen fertility in the succeeding generations of tetraploids could result from a decrease in the frequency of quadrivalent types other than the alternate chains.     

Genetic variation of a global germplasm collection of chickpea (<Emphasis Type="Italic">Cicer arietinum</Emphasis> L.) including Italian accessions at risk of genetic erosion

Chickpea (Cicer arietinum L.) is one of the most important legumes worldwide. We addressed this study to the genetic characterization of a germplasm collection from main chickpea growing countries. Several Italian traditional landraces at risk of genetic erosion were included in the analysis. Twenty-two simple sequence repeat (SSR) markers, widely used to explore genetic variation in plants, were selected and yielded 218 different alleles. Structure analysis and hierarchical clustering indicated that a model with three distinct subpopulations best fits the data. The composition of two subpopulations, named K1 and K2, broadly reflects the commercial classification of chickpea in the two types desi and kabuli, respectively. The third subpopulation (K3) is composed by both desi and kabuli genotypes. Italian accessions group both in K2 and K3. Interestingly, this study highlights genetic distance between desi genotypes cultivated in Asia and Ethiopia, which respectively represent the chickpea primary and the secondary centres of diversity. Moreover, European desi are closer to the Ethiopian gene pool. Overall, this study will be of importance for chickpea conservation genetics and breeding, which is limited by the poor characterization of germplasm collection.     

Polyploidy and sterility in relation to sex in Dioscorea alata L. (Dioscoreaceae)

Chromosome numbers and fertility studies of 73 male and 30 female flowering germplasm accessions of Dioscorea alata L. were carried out. All males were tetraploids showing the same chromosome number (n=20 or 2n=40) and were pollen fertile (10.9–96.2%), most of them being highly fertile. Among the female the majority were higher ploids (hexa-and octoploids; 2n=60 and 80) and sexually completely sterile. There were only two tetraploid female accessions which were sexually fertile. Pollination studies revealed that seed sterility in D. alata was due to female sterility associated with the occurrence of higher levels of ploidy. The female sex-limited occurrence of higher polyploidy and sterility observed in D. alata is a curious situation among dioecious higher plants.     

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies

With the expansion of next‐generation sequencing technology and advanced bioinformatics, there has been a rapid growth of genome sequencing projects. However, while this technology enables the rapid and cost‐effective assembly of draft genomes, the quality of these assemblies usually falls short of gold standard genome assemblies produced using the more traditional BAC by BAC and Sanger sequencing approaches. Assembly validation is often performed by the physical anchoring of genetically mapped markers, but this is prone to errors and the resolution is usually low, especially towards centromeric regions where recombination is limited. New approaches are required to validate reference genome assemblies. The ability to isolate individual chromosomes combined with next‐generation sequencing permits the validation of genome assemblies at the chromosome level. We demonstrate this approach by the assessment of the recently published chickpea kabuli and desi genomes. While previous genetic analysis suggests that these genomes should be very similar, a comparison of their chromosome sizes and published assemblies highlights significant differences. Our chromosomal genomics analysis highlights short defined regions that appear to have been misassembled in the kabuli genome and identifies large‐scale misassembly in the draft desi genome. The integration of chromosomal genomics tools within genome sequencing projects has the potential to significantly improve the construction and validation of genome assemblies. The approach could be applied both for new genome assemblies as well as published assemblies, and complements currently applied genome assembly strategies.     

Evidence for the existence of 2n gametes in Lotus tenuis Wald. et Kit. (2n=2x=12): their relevance in evolution and breeding of Lotus corniculatus L. (2n=4x=24)

Summary Crosses between male sterile L. corniculatus (2n=4x=24) and L. tenuis (2n=2x=12) plants were performed in order to verify the presence of 2n gametes in L. tenuis. All but one of the plants from these crosses had 2n=4x=24 and the L. corniculatus phenotype; this plant had 2n=2x=12 and the L. tenuis phenotype. The plants also showed good quantity of pollen at tripping, good pollen fertility and good percentage of seed setting in the backcross to L. corniculatus. On the whole, both cytological and morphological observations, showing that all but one of the plants from L. corniculatus x L. tenuis were normal tetraploids, suggest the existence of diploandrous gametes in L. tenuis. On the other hand, haploid parthenogenesis probably gave origin to the dihaploid plant 2n=2x=12.     

Genome-wide insertion–deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea

We developed 21,499 genome-wide insertion–deletion (InDel) markers (2- to 54-bp in silico fragment length polymorphism) by comparing the genomic sequences of four (desi, kabuli and wild C. reticulatum) chickpea [Cicer arietinum (L.)] accessions. InDel markers showing 2- to 6-bp fragment length polymorphism among accessions were abundant (76.8%) in the chickpea genome. The physically mapped 7,643 and 13,856 markers on eight chromosomes and unanchored scaffolds, respectively, were structurally and functionally annotated. The 4,506 coding (23% large-effect frameshift mutations) and regulatory InDel markers were identified from 3,228 genes (representing 11.7% of total 27,571 desi genes), suggesting their functional relevance for trait association/genetic mapping. High amplification (97%) and intra-specific polymorphic (60–83%) potential and wider genetic diversity (15–89%) were detected by genome-wide 6,254 InDel markers among desi, kabuli and wild accessions using even a simpler cost-effective agarose gel-based assay. This signifies added advantages of this user-friendly genetic marker system for manifold large-scale genotyping applications in laboratories with limited infrastructure and resources. Utilizing 6,254 InDel markers-based high-density (inter-marker distance: 0.212 cM) inter-specific genetic linkage map (ICC 4958 × ICC 17160) of chickpea as a reference, three major genomic regions harboring six flowering and maturity time robust QTLs (16.4–27.5% phenotypic variation explained, 8.1–11.5 logarithm of odds) were identified. Integration of genetic and physical maps at these target QTL intervals mapped on three chromosomes delineated five InDel markers-containing candidate genes tightly linked to the QTLs governing flowering and maturity time in chickpea. Taken together, our study demonstrated the practical utility of developing and high-throughput genotyping of such beneficial InDel markers at a genome-wide scale to expedite genomics-assisted breeding applications in chickpea.     

Morphological and cytological studies of colchicine-induced tetraploids inTorenia fournieri lind

The present paper concerns a morphological and cytological comparison between the naturally occurring diploid and the colchicine induced tetraploid ofTorenia fournieri Lind.Treatment of growing points of young seedlings with 0.20% aqueous colchicine for 10 hours on two successive days was most effective in inducing tetraploidy. The induced tetraploids showed the usual gigas characters associated with autotetraploidy. There was a significant reduction in pollen fertility and seed setting of tetraploids as compared to their diploid progenitors.The chromosome numbers of the diploids and the induced tetraploids were determined as n=9 and n=18, respectively. The diploids showed normal meiosis whereas tetraploids were characterized by a high frequency of unequal distribution of chromosomes at anaphase. The induced tetraploids possessed larger flowers. The variability in flower size of the tetraploids offers a good scope for evolving a better horticultural variety of this species.     

Chromosomal status,gene exchange and evolution inDactylis

The average cross fertility is low and influenced by genotype, rather than by the taxonomic position of the parents. A few genotype combinations were reasonably fertile. On the average, crosses were more successful with the tetraploid as the female parent. When the triploids, which are functionally male-sterile, were allowed to outcross to diploids and tetraploids some seed setting occurred comparable in extent to the initial crosses. Meiosis is irregular with trivalents, bivalents and univalents; the mean multivalent frequency shows a positive correlation with mean chiasma frequency. Pairing seems to be affected mainly by the genetic constitution of the parents and not by interspecific affinities. The low fertility of the triploids is not surprising in view of the apparently random assortment of the chromosomes to the gametes.     

Polyploidy affects the seed,dormancy and seedling characteristics of a perennial grass,conferring an advantage in stressful climates

• Polyploidy (the state of having more than two genome copies) is widely distributed in flowering plants and can vary within species, with polyploid races often associated with broad ecological tolerances. Polyploidy may influence within‐species variation in seed development, germination and establishment. We hypothesized that interactions between polyploidy and the seed developmental environment would affect subsequent dormancy, germination and early growth traits, particularly in stressful environments.
• Using seeds developed in a common garden under ambient and warmed conditions, we conducted germination trials under drought and temperature stress, and monitored the subsequent growth of seedlings. The study species, Themeda triandra, is a widespread, keystone, Australian native grass and a known polyploid complex.
• Tetraploid plants produced heavier, more viable seeds than diploids. Tetraploids were significantly more dormant than diploids, regardless of seed developmental environment. Non‐dormant tetraploids were more sensitive to germination stress compared to non‐dormant diploids. Finally, tetraploid seedlings were larger and grew faster than diploids, usually when maternal plants were exposed to developmental temperatures atypical to the source environment.
• Seed and seedling traits suggest tetraploids are generally better adapted to stressful environments than diploids. Because tetraploid seeds of T. triandra are more dormant they are less likely to germinate under stress, and when they do germinate, seedling growth is rapid and independent of seed developmental environment. These novel results demonstrate that polyploidy, sometimes in interaction with developmental environment and possibly also asexuality, can have within‐species variation in seed and seedling traits that increase fitness in stressful environments.

     

Tetraploids Isatis indigotica are more responsive and adaptable to stresses than the diploid progenitor based on changes in expression patterns of a cold inducible Ii CPK1

In plants, Ca²⁺-dependent protein kinases (CDPKs) are characterized as important sensors of Ca²⁺ flux in response to varieties of biotic and abiotic stress. A comprehensive survey of global gene expression performed by using an Arabidopsis thaliana whole genome Affymetrix gene chip revealed that CDPK tends to be significantly higher in tetraploid Isatis indigotica than in diploid ones. To investigate different CDPK expression in response to polyploidy, a full-length cDNA clone (IiCPK1) encoding CDPK was isolated from the traditional Chinese medicinal herb I. indigotica cDNA library. IiCPK1 contains some basic features of CDPKs: a catalytic kinase domain including an ATP-binding domain and four EFhand calcium-binding motifs. Real-time PCR analysis indicated the expression of IiCPK1 from two kinds of I. indigotica (tetraploid and diploid). They both were induced in response to cold stress, but tetraploids I. indigotica which has good fertility, exhibited an enhanced resistance and higher yield, and presented to be more responsive and adaptable. Our results suggest that IiCPK1 gene plays a role in adapting to the environmental stress.     

Numerous mitochondrial DNA haplotypes reveal multiple independent polyploidy origins of hexaploids in Carassius species complex

Evolutionary trajectory and occurrence history of polyploidy have been extensively studied in plants, but they remain quite elusive in vertebrates. Here, we sampled and gathered 4,159 specimens of polyploid Carassius species complex including 1,336 tetraploids and 2,823 hexaploids from a large geographic scale (49 localities) across East Asia, and identified a huge number of 427 diverse haplotypes of mitochondrial control region, in which 74 haplotypes with total occurrence frequency up to 75.498% were shared by hexaploids and tetraploids. Significantly, these diverse haplotypes were clustered into four major lineages, and many haplotypes of hexaploids and tetraploids were intermixed in every lineage. Moreover, the evolutionary trajectory and occurrence history of four different lineages were revealed by a simplified time‐calibrated phylogenetic tree, and their geographic distribution frequencies and haplotype diversity were also analyzed. Furthermore, lineage C and D were revealed to undergo population expansion throughout mainland China. Therefore, our current data indicate that hexaploids should undergo multiple independent polyploidy origins from sympatric tetraploids in the polyploid Carassius species complex across East Asia.     

A CYTOGENETIC ANALYSIS OF CERTAIN POLYPLOIDS IN GRINDELIA (COMPOSITAE)

Two diploid taxa, Grindelia procera and G. camporum, and 3 tetraploid ones, G. camporum, G. hirsutula, and G. stricta, have been studied to ascertain their interrelationships. Meiosis in diploid parental strains was regular, the common chromosome configuration being 5 rod bivalents and 1 ring bivalent. The average chiasmata frequency per chromosome was 0.60. Pollen fertility was about 90% in all strains examined. Diploid interspecific hybrids had normal meiosis with an average chiasmata frequency of 0.56 per chromosome. No heterozygosity for inversions or interchanges was detected, and pollen fertility was above 85%. Meiosis in parental tetraploid strains was characterized by the presence of quadrivalents in addition to a complementary number of bivalents. The average chiasmata frequency per chromosome was 0.59 and pollen fertility was generally about 80%. Tetraploid interspecific hybrids also had quadrivalents, normal meiosis, and high pollen fertility. Close genetic relationships between the diploids and between the tetraploids are indicated, and geographical, ecological, and seasonal barriers to gene exchange exist. Attempts to obtain hybrids between diploids and tetraploids were successful in a few cases. The hybrids were tetraploid and had normal meiosis and fertility similar to parental and F₁ tetraploids. Their origin was by the union of unreduced gametes of the diploid female parent and normal pollen from the tetraploid parent. On the basis of chromosome homology, normal meiosis, plus high fertility exhibited in the diploid, tetraploid, and diploid X tetraploid interspecific hybrids, these species of Grindelia are considered to be a part of an autopolyploid complex. Gene exchange between diploids and diploids, tetraploids and tetraploids, and diploids and tetraploids is possible. Tetraploid G. camporum may have originated by hybridization between G. procera and diploid G. camporum with subsequent doubling of chromosomes and selection for the combined characteristics of the diploids.     

Narrow Genetic Variability in Cicer arietinum L. as Revealed by RFLP Analysis

A subgenomic library constructed from small Pstl restriction fragments (0.4 to 2.0 kb) yielded 83.18% low-copy clones. Using 17 random genomic and 5 heterologous probes in 65 probe-enzyme combinations, Restriction Fragment Length Polymorphism (RFLP) for nuclear DNA was studied in five desi and five kabuli type chickpea cultivars. Only two clones revealed polymorphism in the cultivars tested. No polymorphism in chickpea varieties was detected with four Random Amplified Polymorphic DNA (RAPD) markers studied. However, some degree of polymorphism between C. arietinum and its wild relative C. reticulatum was detected. The RFLP analysis of chloroplast and mitochondrial genomes showed no polymorphism.     

Evaluation of the Effect of Pollen Irradiation on Karyotype Variability in M2 Cotton Plants

The karyotypes of biomorphologically abnormal cotton (Gossypium hirsutum L.) plants obtained in M₂ after pollination with pollen irradiated at dose rates 10, 15, 20, and 25 Gy were studied. Various genomic and chromosomal mutations were detected in 57 M₂ families. The primary monosomics isolated in M₂ were found to be cytologically more stable and more viable, since they had higher meiotic index, pollen fertility, and seed formation. In M₂, a decrease in the number of plants with multiple karyotype aberrations and interchromosomal exchanges with high frequency of multivalent formation was observed. The multivalent configurations had different types and chromosome disjunctions. Their pollen fertility was higher than in translocants found in M₁. Desynapsis often occurred in M₂, including plants with chromosome deficiency or rearrangements. The variation in the number of univalents in various cells was found to result from different expression of synaptic genes. The results indicate stabilization of karyotypes, increase in cytologic stability and viability, and the absence of sterility in aberrant plants.