Fungal diversity and deterioration in mummified woods from the ad Astra Ice Cap region in the Canadian High Arctic

Non-permineralized or mummified ancient wood found within proglacial soil near the ad Astra Ice Cap (81°N, 76°W), Ellesmere Island, Canada was investigated to ascertain the identification of the trees, current morphological and chemical characteristics of the woods and the fungi within them. These woods, identified as Betula, Larix, Picea and Pinus, were found with varying states of physical and chemical degradation. Modern microbial decomposition caused by soft rot fungi was evident and rDNA sequencing of fungi obtained from the samples revealed several species including Cadophora sp., Exophiala sp., Phialocephala sp., as well as others. Analytical ¹³C-labeled tetramethylammonium hydroxide thermochemolysis showed the lignin from the ancient wood was in a high degree of preservation with minor side chain alteration and little to no demethylation or ring hydroxylation. The exposure of these ancient woods to the young soils, where woody debris is not usually prevalent, provides carbon and nutrients into the polar environment that are captured and utilized by unique decay fungi at this Arctic site.     

Decomposition of Japanese beech wood by diverse fungi isolated from a cool temperate deciduous forest

We assessed 62 fungal strains in 31 species of wood decay fungi in the ability to decompose wood blocks of Japanese beech (Fagus crenata) under a pure culture condition. Fungi were collected in a cool temperate beech forest in Japan and isolated from the inside of beech logs and from sporocarps fruiting on logs and snags of beech that were different in diameter and decay class. Fungi in Holobasidiomycetidae showed marked decomposition of lignin and carbohydrate. These fungi were divided into three groups according to the pattern of lignin and carbohydrate utilization. Phanerochaete filamentosa decomposed lignin selectively. Lampteromyces japonicus, Steccherinum rhois, Trichaptum biforme, Stereum ostrea, Mycena haematopoda, Antrodiella albocinnamomea, Daedalea dickinsii, Daedaleopsis tricolor, Ganoderma tsunodae, and Trametes versicolor decomposed lignin and carbohydrates simultaneously. Psathyrella candolleana, Lenzites betulinus, and Trametes hirsuta decomposed carbohydrates selectively. Species in the Phragmobasidiomycetidae and in the Ascomycota caused low mass loss of wood.     

Relationship of nitrogen to the onset and suppression of ligninolytic activity and secondary metabolism in Phanerochaete chrysosporium

Ligninolytic activity in the white-rot fungus Phanerochaete chrysosporium was previously found not to be induced by lignin, but to develop in cultures in response to nitrogen starvation. Added NH ₄ ⁺ suppressed existing activity. The present study examined amino acid profiles and protein concentrations during onset of ligninolytic activity (synthetic ¹⁴C-lignin¹⁴CO₂) in nitrogen-limited cultures, and defined some characteristics of subsequent suppression by added nutrient nitrogen. During the transition between depletion of medium nitrogen and the onset of ligninolytic activity, total free intracellular amino acids increased, then rapidly decreased; changes in glutamate concentration played a major role. Intracellular protein concentration fluctuated in a manner roughly converse to that of the concentration of free amino acids. Protein turnover was rapid (5–7%/h) during the transition period. Glutamate, glutamine, and histidine were the most effective of 14 nitrogenous compounds in suppressing ligninolytic activity after its onset. The suppressive effect was not mediated through carbon (glucose)-catabolite repression or by alterations in culture pH. Activities responsible for oxidation of lignin and the ligninrelated phenol, 4-hydroxy-3-methoxyacetophenone, responded similarly to added nitrogen. Synthesis of a secondary metabolite, veratryl alcohol, like lignin oxidation, was suppressed quite sharply by glutamate and significantly by NH ₄ ⁺ . Results indicate that nitrogen metabolism affects ligninolytic activity as a part of secondary metabolism, and suggest a role for glutamate metabolism in regulating this phase of culture development.Non-Standard Abbreviations DMS 2,2-dimethylsuccinate - GLC gas-liquid chromatography - TCA trichloroacetic acid     

New species of pinaceous fossil wood from the Pliocene of southern Primorye (Russian Far East)

New species of the Pinaceae, Abies chavchavadzeae and Piceoxylon ussuriense, are described on the basis of fossil woods from the Pliocene of the Pavlovka lignite field (southern Primorye). For the first time, fossil wood of Abies is reported from the Russian Far East.     

Decay of vertebrate characters in hagfish and lamprey (Cyclostomata) and the implications for the vertebrate fossil record

The timing and sequence of events underlying the origin and early evolution of vertebrates remains poorly understood. The palaeontological evidence should shed light on these issues, but difficulties in interpretation of the non-biomineralized fossil record make this problematic. Here we present an experimental analysis of decay of vertebrate characters based on the extant jawless vertebrates (Lampetra and Myxine). This provides a framework for the interpretation of the anatomy of soft-bodied fossil vertebrates and putative cyclostomes, and a context for reading the fossil record of non-biomineralized vertebrate characters. Decay results in transformation and non-random loss of characters. In both lamprey and hagfish, different types of cartilage decay at different rates, resulting in taphonomic bias towards loss of 'soft' cartilages containing vertebrate-specific Col2α1 extracellular matrix proteins; phylogenetically informative soft-tissue characters decay before more plesiomorphic characters. As such, synapomorphic decay bias, previously recognized in early chordates, is more pervasive, and needs to be taken into account when interpreting the anatomy of any non-biomineralized fossil vertebrate, such as Haikouichthys, Mayomyzon and Hardistiella.     

Techniques for the detection of pathogenic Cryptococcus species in wood decay substrata and the evaluation of viability in stored samples

In this study, we evaluated several techniques for the detection of the yeast form of Cryptococcus in decaying wood and measured the viability of these fungi in environmental samples stored in the laboratory. Samples were collected from a tree known to be positive for Cryptococcus and were each inoculated on 10 Niger seed agar (NSA) plates. The conventional technique (CT) yielded a greater number of positive samples and indicated a higher fungal density [in colony forming units per gram of wood (CFU.g^-1) ] compared to the humid swab technique (ST). However, the difference in positive and false negative results between the CT-ST was not significant. The threshold of detection for the CT was 0.05.10³ CFU.g^-1, while the threshold for the ST was greater than 0.1.10³ CFU^-1. No colonies were recovered using the dry swab technique. We also determined the viability of Cryptococcus in wood samples stored for 45 days at 25ºC using the CT and ST and found that samples not only continued to yield a positive response, but also exhibited an increase in CFU.g^-1, suggesting that Cryptococcus is able to grow in stored environmental samples. The ST.1, in which samples collected with swabs were immediately plated on NSA medium, was more efficient and less laborious than either the CT or ST and required approximately 10 min to perform; however, additional studies are needed to validate this technique.     

A multiplex PCR-based method for the detection and early identification of wood rotting fungi in standing trees

AIMS: The goal of this research was the development of a PCR-based assay to identify important decay fungi from wood of hardwood tree species in northern temperate regions. METHODS AND RESULTS: Eleven taxon-specific primers were designed for PCR amplification of either nuclear or mitochondrial ribosomal DNA regions of Armillaria spp., Ganoderma spp., Hericium spp., Hypoxylon thouarsianum var. thouarsianum, Inonotus/Phellinus-group, Laetiporus spp., Perenniporia fraxinea, Pleurotus spp., Schizophyllum spp., Stereum spp. and Trametes spp. Multiplex PCR reactions were developed and optimized to detect fungal DNA and identify each taxon with a sensitivity of at least 1 pg of target DNA in the template. This assay correctly identified the agents of decay in 82% of tested wood samples. CONCLUSIONS: The development and optimization of multiplex PCRs allowed for reliable identification of wood rotting fungi directly from wood. SIGNIFICANCE AND IMPACT OF THE STUDY: Early detection of wood decay fungi is crucial for assessment of tree stability in urban landscapes. Furthermore, this method may prove useful for prediction of the severity and the evolution of decay in standing trees.     

Comparison of methods to evaluate the potential of fungal growth on decay of spruce wood after short-time treatment

Several analytical methods were compared to evaluate characteristic wood decaying fungi for their potential to depolymerise lignin on spruce wood particles. Wood samples were treated with the white rot fungi Phlebia brevispora, Ceriporiopsis subvermispora, Merulius tremellosus, Pycnoporus sanguineus, Trametes pubescens and with the brown rot fungus Gloeophyllum trabeum. The UV absorbancies of crude ethanol extracts, total extractives content from sequential extraction, ligninolytic enzyme activities, lignin solubilisation and decrease of lignin content were compared. It was shown, that, in early decay stages, UV absorbancies of crude ethanol extracts and total extractives content correlate well with lignin degradation, increase of acid soluble lignin and increased production of ligninolytic enzymes (total peroxidase). Lignin content was determined using FT-NIR spectroscopy as well as by wet-chemical analysis, indicating a very good correlation between the two methods. According to the different analytical methods, the tested fungi can be classified into three categories based on their characteristic behaviour: brown rot, “slow” and “fast” white rot.     

Melanoderma boninense,a new species of Melanoderma (Polyporales,Agaricomycota) from the Bonin Islands in Japan

Melanoderma boninense is described and illustrated as a new species from the Bonin Islands, Japan, on the basis of morphological and phylogenetic investigations. This species is characterized by sessile basidiocarps with an ungulate pileus, a black crust on the pileus surface, pores 4–6/mm, a dimitic hyphal system comprising clamped generative hyphae and cyanophilous skeletal binding hyphae with or without a dextrinoid reaction, cylindrical basidiospores measuring 5.5–7.5 × 2–3 μm, and cystidioles on the sides of tubes and near the pore surface. Morphological examination of authentic specimens of other Melanoderma species revealed that the genus is variable in terms of the shape and size of cystidioles. A black crust on the pileus surface composed of palisade and highly agglutinated hyphae is a distinctive diagnostic morphological feature of Melanoderma that differentiates it from allied genera. Melanoderma boninense, which is currently known from a restricted area of the Bonin Islands, is potentially threatened by environmental reduction of the type locality due to the invasive tree Bischofia javanica.     

Relationship between the grain pattern in the wood,domain pattern and pattern of growth activity in the storeyed cambium of trees

Summary The relationship between the arrangement of cell events occurring in cambium in a definite configuration and the grain pattern of wood was investigated. Taking into consideration the growth activity of fusiform cell ends, a model of a migrating morphogenetic wave determining an event configuration was made. Waves of length =1 m for the periods T=2 years and T=3 years and waves of lengths =l m and =0.04 m for the period T=10 years were considered. On the model, events from successive annual rings, conventionally comprising 10 cell layers each, were summed. In this way, event maps were obtained. For wave =4 mm, the domain pattern on the modelled map was compatible with the grain pattern. The domain pattern for the wave =1 m was impossible to recreate because the wave migrated too fast. In this case, the pattern of event configuration, incompatible with the grain pattern, formed microareas, which were not domains.     

Contribution of dendrochronology to understanding of wood procurement sources for panel paintings in the former Southern Netherlands from 1450 AD to 1650 AD

Since the middle of the 1980s, dendrochronological analyses of panel paintings produced in the former Netherlands have demonstrated the near-exclusive use of oak from the Baltic region. Further, as Hillam and Tyers [1995. Reliability and repeatability in dendrochronological analysis: tests using the Fletcher archive of panel-painting data. Archaeometry 37 (2), 395–405] did for English paintings analyzed by Fletcher, the objective of the present work was to determine whether it was possible to distinguish different Baltic typologies in the wood used for paintings in the ancient Southern Netherlands from 1450 AD to 1650 AD. In this study, it appeared that the same three “English” typologies (BALTIC1, BALTIC2 and BALTIC3) were also found in the Southern Netherlands, in proportions varying by period. The diversity of Baltic typologies in England was interpreted by Hillam and Tyers (1995) as reflecting changes in the procurement sources for wood.In addition to this diversification of Baltic typologies in the Southern Netherlands, a Western European provenance was identified for 16% of the wood used in Flemish panels. The research focused on determination of the provenance of these non-Baltic oaks, by comparison between wood from painting panels and site chronologies for all of Belgium, the northern half of France and southwest Germany. Such comparison yielded a network of good correlations between the panel ring series and site chronologies along the Franco-Belgian Meuse and the French Moselle River.Dendrochronological dates obtained for the Flemish panels in the corpus clarify the period during which diversification of Baltic sources intensified. The parallel between the very high proportion of BALTIC1 type woods in Flemish panels before 1565 AD, and its progressive decrease until complete disappearance in the 1620 AD, and quantitative data from the Sound Toll Records, among others, led to interpret the BALTIC1 typology as representing the enormous hinterland exploited by the Gdansk port, the principal place of export for wood until 1565 AD. This port then decreased in importance until its disappearance at the beginning of the 17th century. Oaks closest to BALTIC2 and BALTIC3 types reflect the percentage of exports lost to the Gdansk competitors.The period of increase in the use of oaks of BALTIC2 and BALTIC3 typologies also coincides with the appearance of the use of Meuse/Moselle oaks. Explanations for these changes are in relationship to the politico-economic and religious contexts, in particular the wars of religion starting in the 1560 AD that destabilized Europe, and the separation of Northern and Southern Netherlands in 1585 AD.     

Gibberellin is required for the formation of tension wood and stem gravitropism in Acacia mangium seedlings

Background and Aims Angiosperm trees generally form tension wood on the upper sides of leaning stems. The formation of tension wood is an important response to gravitational stimulus. Gibberellin appears to be involved in the differentiation of secondary xylem, but it remains unclear whether gibberellin plays a key role in the formation of tension wood and plant gravitropism. Therefore, a study was designed to investigate the effects of gibberellin and of inhibitors of the synthesis of gibberellin, namely paclobutrazole and uniconazole-P, on the formation of tension wood and negative stem gravitropism in Acacia mangium seedlings. Methods Gibberellic acid (GA(3)), paclobutrazole and uniconazole-P were applied to seedlings via the soil in which they were growing. Distilled water was applied similarly as a control. Three days after such treatment, seedlings were tilted at an angle of 45° from the vertical, and samples of stems were collected for analysis 2 weeks, 2 months and 6 months after tilting. The effects of treatments on the stem recovery degree (Ro) were analysed as an index of the negative gravitropism of seedlings, together the width of the region of tension wood in the upper part of inclined stems. Key Results It was found that GA(3) stimulated the negative gravitropism of tilted seedling stems of A. mangium, while paclobutrazole and uniconazole-P inhibited recovery to vertical growth. Moreover, GA(3) stimulated the formation of tension wood in tilted A. mangium seedlings, while paclobutrazole and uniconazole-P strongly suppressed the formation of tension wood, as assessed 2 weeks after tilting. Conclusions The results suggest that gibberellin plays an important role at the initial stages of formation of tension wood and in stem gravitropism in A. mangium seedlings in response to a gravitational stimulus.     

Seasonal variation in the resting metabolic rate of male wood mice Apodemus sylvaticus from two contrasting habitats 15 km apart

Diurnal and nocturnal resting metabolic rates of winter- and summer-acclimatized adult male wood mice Apodemus sylvaticus from two adjacent populations, 15 km apart, were measured. One population lived in deciduous woodland, and experienced a narrower daily range of temperatures than the second population, which inhabited maritime sand-dunes. Ambient temperature and body mass had significant effects on the resting metabolism of mice, excluding winter-acclimatized sand-dune animals where only temperature explained significant amounts of the observed variation. Only in this latter group could a thermoneutral zone be determined, with a lower critical temperature of ca. 25 °C and resting metabolism of 0.155 W. Nocturnal resting metabolic rates were significantly greater than diurnal levels. Winter acclimatization was associated with reductions in thermal conductance and resting metabolism, thus minimizing energy expenditure at rest. Site differences in thermoregulatory strategies were only found in winter, thermal conductances remained similar but mice from the sand-dunes had significantly lower metabolic rates than those from the woodland. Winter acclimatization in wood mice was influenced by factors in addition to photoperiod. Intra-specific and individual variations in resting metabolism, as shown in this study, potentially have a pronounced effect on the daily energy expenditure of a free-living animal. Accepted: 6 September 1996     

Branch wood from the lake shore settlements of Horgen Scheller, Switzerland: Evidence for economic specialization in the late Neolithic period

596 waterlogged, uncarbonized branch wood specimens from four cultural layers of the late Neolithic lake shore site of Horgen Scheller (between 3080 and 3030 B.C.) on Lake Zilrich, Switzerland, were examined. The following parameters were analysed: taxonomy, diameter and age of the twigs, cutting season, and distribution of the branches over the area as well as their distribution in the different cultural layers. The twigs were divided into the following three groups, based on differences observed in these analyses: conifers, deciduous trees with catkins, and deciduous trees without catkins. Branch diameter examinations revealed that branches of deciduous trees were thicker on average than those of conifers. While branches from deciduous trees without catkins were gathered at the age of seven years on average, those of conifers and deciduous trees with catkins were older. Waney edge analyses showed that the majority of the twigs were cut within the winter months. Among the deciduous trees without catkins there is, however, a markedly higher proportion of branches cut in summer than in the other two groups. The taxonomic examinations demonstrated that 70% of the specimens consisted of twigs of eitherCorylus avellana L. (hazel),Taxus baccata L. (yew), orAbies alba Mill. (silver fir), thus implying the great economic importance of these species in the settlements of Horgen Scheller. To our knowledge this is the first report that a remarkably high proportion of yew twigs (26.8%) has been found in an analysis of subfossil twigs. The possibility is discussed that the inhabitants had specialized in obtaining yew from the region. Concentrations of wood finds, possible remains of buildings, became evident from the analyses of the distribution of the branch wood over the excavated area. A very similar spatial distribution pattern of the taxa was found through the different cultural layers. Therefore it seems likely that existing structures were reused when a new settlement was built. The data also show that the building outlines slowly moved towards land over time. A rising lake water level could have led to gradual dislocation of the settlements.     

The use of modelling and simulation approach in reconstructing past landscapes from fossil pollen data: a review and results from the POLLANDCAL network

Information on past land cover in terms of absolute areas of different landscape units (forest, open land, pasture land, cultivated land, etc.) at local to regional scales is needed to test hypotheses and answer questions related to climate change (e.g. feedbacks effects of land-cover change), archaeological research, and nature conservancy (e.g. management strategy). The palaeoecological technique best suited to achieve quantitative reconstruction of past vegetation is pollen analysis. A simulation approach developed by Sugita (the computer model POLLSCAPE) which uses models based on the theory of pollen analysis is presented together with examples of application. POLLSCAPE has been adopted as the central tool for POLLANDCAL (POLlen/LANdscape CALibration), an international research network focusing on this topic. The theory behind models of the pollen–vegetation relationship and POLLSCAPE is reviewed. The two model outputs which receive greatest attention in this paper are the relevant source area of pollen (RSAP) and pollen loading in mires and lakes. Six examples of application of POLLSCAPE are presented, each of which explores a possible use of the POLLANDCAL tools and a means of validating or evaluating the models with empirical data. The landscape and vegetation factors influencing the size of the RSAP, the importance of pollen productivity estimates (PPEs) for the model outputs, the detection of small and rare patches of plant taxa in pollen records, and quantitative reconstructions of past vegetation and landscapes are discussed on the basis of these examples. The simulation approach is seen to be useful both for exploring different vegetation/landscape scenarios and for refuting hypotheses.     

Environmental effects on CO2 efflux from riparian tundra in the northern foothills of the Brooks Range,Alaska, USA

Summary Carbon dioxide efflux and soil microenvironmental factors were measured diurnally in Carex aquatilus-and Eriophorum angustifolium-dominated riparian tundra communities to determine the relative importance of soil environmental factors controlling ecosystem carbon dioxide exchange with the atmosphere. Measurements were made weekly between 18 June and 24 July 1990. Diurnal patterns in carbon dioxide efflux were best explained by changes in soil temperature, while seasonal changes in efflux were correlated with changes in depth to water table, depth to frozen soil and soil moisture. Carbon dioxide efflux rates were lowest early in the growing season when high water tables and low soil temperatures limited microbial and root activity. Individual rainfall events that raised the water table were found to strongly reduce carbon dioxide efflux. As the growing season progressed, rainfall was low and depth to water table and soil temperatures increased. In response, carbon dioxide efflux increased strongly, attaining rates late in the season of approximately 10 g CO₂ m^–2 day^–1. These rates are as high as maxima recorded for other arctic sites. A mathematical model is developed which demonstrates that soil temperature and depth to water table may be used as efficient predictors of ecosystem CO₂ efflux in this habitat. In parallel with the field measurements of CO₂ efflux, microbial respiration was studied in the laboratory as a function of temperature and water content. Estimates of microbial respiration per square meter under field conditions were made by adjusting for potential respiring soil volume as water table changed and using measured soil temperatures. The results indicate that the effect of these factors on microbial respiration may explain a large part of the diurnal and seasonal variation observed in CO₂ efflux. As in coastal tundra sites, environmental changes that alter water table depth in riparian tundra communities will have large effects on ecosystem CO₂ efflux and carbon balance.     

Survival and death of Chara internodal cells in electrolyte solutions and calcium release from the cell wall

Abstract. Survival and death of Chara internodal cells were investigated in one of the alkali metal salts KCl, some of the alkali earth metal salts CaCl₂, Ca(NO₃)₂, MgCl₂, Mg(NO₃)₂, SrCl₂, Sr(NO₃)₂, BaCl₂ and Ba(NO₃)₂, potassium phosphate pH buffer solution (pH 7.0), Tris-maleate pH buffer solution (pH 7.0), HEPES (N-2-hydroxyethylpiperazine-N′-2-ethanesulphonic acid)-KOH (pH 7.0) pH buffer solution, calcium buffer solutions, and deionized water. Most of the internodal cells died within a day or a few days in KCl, MgCl₂, Mg(NO₃)₂, BaCl₂ and Ba(NO₃)₂ solutions of higher concentrations, calcium buffer solutions of pCa 6.0, 10.0 mol m^-3 potassium phosphate pH buffer solution and 10.0 mol m^-3 Trismaleate pH buffer solution. However, all of the internodal cells survived more than 10 d in deionized water, 80.0 mol m^-3 CaCl₂, 80.0 mol m^-3 Ca(NO₃)₂, 80.0 mol m^-3 SrCl₂, 80.0 mol m^-3 Sr(NO₃)₂ calcium buffer solutions of pCa 4.0 and pCa 5.0, and 10.0 mol m^-3 HEPES-KOH (pH 7.0) pH buffer solution. Addition of Ca²⁺ or Sr²⁺ to K⁺, Mg²⁺ and Ba²⁺ salt solutions increased the survival rates of the internodal cells. Calcium release from the internodal cell wall was measured in deionized water, KCl, NaCl, MgCl₂, CaCl₂, SrCl₂ and BaCl₂ solutions. Except in deionized water and CaCl₂ solution, most of the calcium binding to the cell wall was released within one or a few hours in respective electrolyte solutions. Thus, survival and death of the internodal cells in the electrolyte solutions tested were interpreted in terms of the calcium release from the cell wall and the cell membrane, and intrinsic ability of Sr²⁺ to maintain the cell membrane normal.