Realistic threshold policy with hysteresis to control predator–prey continuous dynamics

This paper introduces a threshold policy with hysteresis (TPH) for the control of one-predator one-prey models. The models studied are the Lotka–Volterra and Rosenzweig–MacArthur two species density-dependent predator–prey models and the Arditi–Ginzburg nondimensional ratio-dependent model. The proposed policy (TPH) changes the dynamics of the system in such a way that a bounded oscillation is achieved confined to a region that does not allow extinction of either species. The policy can be designed by a suitable choice of so called virtual equilibrium points in a simple and intuitive manner.

Morphological, anatomical and chemical characterization of white spruce ( Picea glauca ‘Conica’) differently aged needles and hypotheses on their influence on Oligonychus ununguis infestation

Our investigations suggest that the usually observed avoidance by O. ununguis of current year’s twigs of P. glauca ‘Conica’ as a place for feeding and development may be connected with their morphological and anatomical structure as well their biochemical composition. Needles of the current year’s twigs were covered with a thicker layer of wax and formed more extensive epidermis cell walls, in comparison with needles of 1-year-old twigs. Young needles also showed lower concentration of reducing sugars and soluble proteins, which might additionally reduce their nutritional suitability for mite development. Differences were also found between the 1-year-old growth and current growth in contribution of essential oils and a range of other compounds. Further analyses of the effect of these compounds on mite behavior may provide additional explanation of the feeding preferences of the mite.

The performance of synchronous parallel polynomial root extraction on a ring multicomputer

In this paper, a parallel algorithm for computing the roots of a given polynomial of degree n on a ring of processors is proposed. The algorithm implements Durand–Kerner’s method and consists of two phases: initialisation, and iteration. In the initialisation phase all the necessary preparation steps are realised to start the parallel computation. It includes register initialisation and initial approximation of roots requiring 3n−2 communications, 2 exponentiation, one multiplications, 6 divisions, and 4n−3 additions. In the iteration phase, these initial approximated roots are corrected repeatedly and converge to their accurate values. The iteration phase is composed of some iteration steps, each consisting of 3n communications, 4n+3 additions, 3n+1 multiplications, and one division.

Lévy Flights in Dobe Ju/’hoansi Foraging Patterns

We analyzed data on Ju/’hoansi hunter–gatherer foraging patterns and found that their movements between residence camps can be modeled as a Lévy flight. The step lengths of their movements scale as a power law with an exponent μ = 1.97. Their wait times (residence times) at the camps also scale as a power law (μ = 1.45). A Lévy flight with step lengths μ = 2 is an optimal search pattern for scarce, randomly located targets; thus, the Ju/’hoansi foraging pattern may approach an optimal search in this area of sparse plant and animal resources. These findings affect the application of optimal foraging theory to humans in anthropology and archaeology because they alter the way in which search and travel times should be quantified. These results may also carry implications for the study of other patterns of human movement, such as demic diffusion and migration.

Is it a revolution?

Jablonka and Lamb's claim that evolutionary biology is undergoing a ‘revolution’ is queried. But the very concept of revolutionary change has uncertain application to a field organized in the manner of contemporary biology. The explanatory primacy of sequence properties is also discussed.

Adaptationism and the adaptive landscape

Debates over adaptationism can be clarified and partially resolved by careful consideration of the ‘grain’ at which evolutionary processes are described. The framework of ‘adaptive landscapes’ can be used to illustrate and facilitate this investigation. We argue that natural selection may have special status at an intermediate grain of analysis of evolutionary processes. The cases of sickle-cell disease and genomic imprinting are used as case studies.

Towards dynamical system models of language-related brain potentials

Event-related brain potentials (ERP) are important neural correlates of cognitive processes. In the domain of language processing, the N400 and P600 reflect lexical-semantic integration and syntactic processing problems, respectively. We suggest an interpretation of these markers in terms of dynamical system theory and present two nonlinear dynamical models for syntactic computations where different processing strategies correspond to functionally different regions in the system’s phase space.

The Ethics of Birth and Death: Gender Infanticide in India

This paper discusses the persistent devaluation of the girl child in India and the link between the entrenched perception of female valuelessness and the actual practice of infanticide of girl babies or foetuses. It seeks to place female infanticide, or ‘gendercide,’ within the context of Western-derived conceptions of ethics, justice and rights. To date, current ethical theories and internationally purveyed moral frameworks, as well as legal and political declarations, have fallen short of an adequate moral appraisal of infanticide. This paper seeks to rethink the issue.

Rattus exulans and the catastrophic disappearance of Hawai’i’s native lowland forest

Paleoenvironmental and archaeological investigations from the ’Ewa Plain of O’ahu provide insight into the problem of understanding lowland native forest loss in Hawai’i. Data from pollen analysis of a pond core record, avian paleontology, and archeology, document a precipitous decline of the native forest starting before Polynesian settlement on the ’Ewa Plain but after Polynesian colonization of O’ahu. It is hypothesized that rats, introduced by Polynesian colonizers, increased exponentially in the absence of significant predators or competitors, feeding on a largely endemic vegetation that had evolved in the absence of mammalian predators. Rats radiated ahead of human colonizers on O’ahu, eating their way through the vegetation, perhaps before the colonizers had encountered much of the pristine lowland forest into which the rats had radiated. This hypothesis is supported by several observations, including the almost complete absence of extinct or extirpated avian faunal remains in archaeological deposits, the present distribution of endemic vegetation in Hawai’i, rat ecology, population biology, and other evidence.

Objects limit human comprehension

This paper demonstrates that the human visual system, the primary sensory conduit for primates, processes ambient energy in a way that obligatorily constructs the objects that we ineluctably perceive. And since our perceptual apparatus processes information only in terms of objects (along with the properties and movements of objects), we are limited in our ability to comprehend ‘what is’ when we move beyond our ordinary world of midsize objects—as, for example, when we address the micro microworld of quantum physics.

Kinds of behaviour

Sciences able to identify appropriate analytical units for their domain, their natural kinds, have tended to be more progressive. In the biological sciences, evolutionary natural kinds are adaptations that can be identified by their common history of selection for some function. Human brains are the product of an evolutionary history of selection for component systems which produced behaviours that gave adaptive advantage to their hosts. These structures, behaviour production systems, are the natural kinds that psychology seeks. We argue these can be identified deductively by classing behaviour first according to its level of behavioural control. Early animals in our lineage used only reactive production, Vertebrates evolved motivation, and later Primates developed executive control. Behaviour can also be classified by the type of evolutionary benefit it bestows: it can deliver either immediate benefits (food, gametes), improvements in the individual’s position with respect to the world (resource access, social status), or improvements in the ability to secure future benefits (knowledge, skill). Combining history and function implies the existence of seven types of behaviour production systems in human brains responsible for reflexive, instinctual, exploratory, driven, emotional, playful and planned behaviour. Discovering scientifically valid categories of behaviour can provide a fundamental taxonomy and common language for understanding, predicting and changing behaviour, and a way of discovering the organs in the brain––its natural kinds––that are responsible for behaviour.

Language processing with dynamic fields

We construct a mapping from complex recursive linguistic data structures to spherical wave functions using Smolensky’s filler/role bindings and tensor product representations. Syntactic language processing is then described by the transient evolution of these spherical patterns whose amplitudes are governed by nonlinear order parameter equations. Implications of the model in terms of brain wave dynamics are indicated. Electronic supplementary material  The online version of this article (doi: ) contains supplementary material, which is available to authorized users.

Hierarchical Categorical Perception in Sensing and Cognitive Processes

This article considers categorical perception (CP) as a crucial process involved in all sort of communication throughout the biological hierarchy, i.e. in all of biosemiosis. Until now, there has been consideration of CP exclusively within the functional cycle of perception–cognition–action and it has not been considered the possibility to extend this kind of phenomena to the mere physiological level. To generalise the notion of CP in this sense, I have proposed to distinguish between categorical perception (CP) and categorical sensing (CS) in order to extend the CP framework to all communication processes in living systems, including intracellular, intercellular, metabolic, physiological, cognitive and ecological levels. The main idea is to provide an account that considers the heterarchical embeddedness of many instances of CP and CS. This will take me to relate the hierarchical nature of categorical sensing and perception with the equally hierarchical issues of the “binding problem”, “triadic causality”, the “emergent interpretant” and the increasing semiotic freedom observed in biological and cognitive systems.

“Berry Patch” As a Kind of Place—the Ethnoecology of Black Huckleberry in Northwestern Canada

The Gitksan and Wet’suwet’en of Northwestern British Columbia formerly used landscape burning to manage patches of black huckleberry (Vaccinium membranaceum), the most important plant resource of their seasonal round. In view of its significance one might postulate that managed sites would conform to a biophysical or ecological type to maximize return for effort. However, a survey of a number of traditionally managed sites indicated that managed sites are characterized by wide variation in biophysical attributes including elevation, aspect and moisture regime, while proximity to fishing sites, village sites, or sites for harvest of alpine resources proved to be a common factor in known historic berry patch sites. We conclude that characterization of the ideal site type for aboriginal V. membranaceum management must include the economy and social institutions of the local First Nations and requires an enhanced appreciation for the sophistication of the strategies and techniques employed in their management and utilization of the species.

The Center for Eukaryotic Structural Genomics

The Center for Eukaryotic Structural Genomics (CESG) is a “specialized” or “technology development” center supported by the Protein Structure Initiative (PSI). CESG’s mission is to develop improved methods for the high-throughput solution of structures from eukaryotic proteins, with a very strong weighting toward human proteins of biomedical relevance. During the first three years of PSI-2, CESG selected targets representing 601 proteins from Homo sapiens, 33 from mouse, 10 from rat, 139 from Galdieria sulphuraria, 35 from Arabidopsis thaliana, 96 from Cyanidioschyzon merolae, 80 from Plasmodium falciparum, 24 from yeast, and about 25 from other eukaryotes. Notably, 30% of all structures of human proteins solved by the PSI Centers were determined at CESG. Whereas eukaryotic proteins generally are considered to be much more challenging targets than prokaryotic proteins, the technology now in place at CESG yields success rates that are comparable to those of the large production centers that work primarily on prokaryotic proteins. We describe here the technological innovations that underlie CESG’s platforms for bioinformatics and laboratory information management, target selection, protein production, and structure determination by X-ray crystallography or NMR spectroscopy.

“A carnival of promiscuous carnal indulgence”: bureaucrats’ ambivalence in reconciling capitalist production with native American habitus

In 1921 the U.S. Office of Indian Affairs (OIA) attempted to suppress ritual public performances in the Southwestern Pueblos. Several reams of documenting text were used to support this authorizing text. These documenting texts were affidavits purporting to describe “degrading tendencies” and “immoral relations” in the Puebloan habitus. The OIA used these sensationalized representations of the habitus of Native Americans’ communities to promote and justify the policy of forced acculturation in the waning days of its implementation. What is perplexing is that these supporting texts were trotted out so late, decades after the major thrusts of the forced acculturation program had first been put into play. My purpose is to analyze the place of these texts in the forced acculturation program. I suggest, following Anne McClintock (1995) that the obsessive fascination that the public performances seem to have held for those who reported on and condemned them, represent a layered and complex intertwining of ambivalence about domestic social relations and gender with confusion about culture and labor. Examining a slice of the U.S. Government’s policy of forced acculturation in a corner of the Native American world reveals a potentially implosive anxiety of reconciling the imposition of a desired mode of production with the persistence of a habitus perceived as celebrating the violation of appropriate domesticity.

Basic Semiosis as Code-Based Control

Though the formal coherence and empirical utility of Marcello Barbieri’s concept of organic code have been starting to become established, a general conception of how the semantics of organic codes is related to the pragmatics of their use is still missing. Barbieri took a first step towards such a conception by distinguishing three types of semiosis in living systems: manufacturing, signalling, and interpretive semiosis. This paper integrates Barbieri’s distinction into Roman Jakobson’s systematization of possible functions of messages in order to propose a general conception of possible types of semiosis in living systems. As a result, Barbieri’s thesis that manufacturing and signalling semiosis are basic types of semiosis, can be confirmed and completed communication-theoretically.

Spandrels and a pervasive problem of evidence

Evolutionary biology, indeed any science that attempts to reconstruct prehistory, faces practical limitations on available data. These limitations create the problem of contrast failure: specific observations may fail to discriminate between rival evolutionary hypotheses. Assessing the risk of contrast failure provides a way to evaluate testing protocols in evolutionary science. Here I will argue that part of the methodological critique in the Spandrels paper involves diagnosing contrast failure problems. I then distinguish the problem of contrast failure from the more familiar philosophical problem of underdetermination, and demonstrate how contrast failure arises in scientific practice with an investigation into Lewontin and White’s (Evolution 14:116–129, 1960) estimation of an adaptive landscape.

Spike-time reliability of layered neural oscillator networks

We study the reliability of layered networks of coupled “type I” neural oscillators in response to fluctuating input signals. Reliability means that a signal elicits essentially identical responses upon repeated presentations, regardless of the network’s initial condition. We study reliability on two distinct scales: neuronal reliability, which concerns the repeatability of spike times of individual neurons embedded within a network, and pooled-response reliability, which concerns the repeatability of total synaptic outputs from a subpopulation of the neurons in a network. We find that neuronal reliability depends strongly both on the overall architecture of a network, such as whether it is arranged into one or two layers, and on the strengths of the synaptic connections. Specifically, for the type of single-neuron dynamics and coupling considered, single-layer networks are found to be very reliable, while two-layer networks lose their reliability with the introduction of even a small amount of feedback. As expected, pooled responses for large enough populations become more reliable, even when individual neurons are not. We also study the effects of noise on reliability, and find that noise that affects all neurons similarly has much greater impact on reliability than noise that affects each neuron differently. Qualitative explanations are proposed for the phenomena observed.

Does Investment in the Sexes Differ When Fathers Are Absent?

This study examines child survival and growth in a patrilineal Ethiopian community as a function of father absence and sex. In line with evolutionary predictions for sex-biased parental investment, the absence of a father and associated constraints on household resources is more detrimental for sons’ than daughters’ survival in infancy. Father absence doubles a son’s risk of dying in infancy but has a positive influence on the well-being of female members of the household, improving daughter survival, growth, and maternal nutritional status. Lack of paternal investment may be compensated for by other matrilateral kin through increased reciprocity between mother, daughter, and sister.