Gammaproteobacterial Diversity and Carbon Utilization in Response to Salinity in the Lakes on the Qinghai–Tibetan Plateau

The Gammaproteobacteria are widely and abundantly distributed in various environments, and they play important roles in the geochemical cycles of biogenic elements (e.g., C, N and S) in the ecosystems. Previous studies showed that Gammaproteobacteria dominate in saline and hypersaline lakes. However, little is known on how salinity influences gammaproteobacterial community composition and their ecological functions (i.e., organic carbon degradation). In this study, we investigated the gammaproteobacterial diversity and carbon utilization and their response to salinity in six saline/hypersaline lakes and one freshwater lake on the Qinghai–Tibetan Plateau (QTP). The results indicated that the gammaproteobacterial community composition was mainly influenced by the salinity of the studied QTP lakes. Salinity was also a key environmental factor influencing the carbon utilization ability of Gammaproteobacteria: within one genus (e.g., Halomonas, Pseudoalteromonas, Vibrio) the strains retrieved from low-salinity environments had stronger carbon utilization ability than their counterparts from high-salinity environments; within one genus, the strains isolated from lakes with different salinity shared similar carbon utilization preference, indicating that species belonging to the same genus may execute similar ecological functions in the environments regardless of salinity.     

Cladocera and geochemical evidence from sediment cores show trophic changes in Polish dystrophic lakes

Change in the trophic state of lakes is a topic of primary interest for limnologists and paleolimnologists, but also for governments in many countries. These changes can be the result of the natural evolution of lake ecosystems, but nowadays are most often connected with human activity influencing water bodies. In this article, we reconstruct changes in the lake productivity and trophic state in three dystrophic (humic) lakes located in Northern Poland. Sediments from these lakes, which are part of a national park, were submitted to Cladocera and chemical composition analyses. Currently, the trophic state of these lakes has been described based on the water's chemical composition, and they have been classified as undisturbed ecosystems with a stable trophic state. The main objective of this study was to evaluate whether these lakes have been stable and undisturbed ecosystems during the past centuries and therefore whether they can be classified as natural and pristine. The results of subfossil Cladocera analysis and sedimentary geochemical analysis confirmed the specific nature of studied lakes. However, our results were surprising and showed that during the last 200 years two of the three lakes have undergone distinct trophic changes, while one of them has barely changed at all.     

A review of the species,community, and ecosystem impacts of road salt salinisation in fresh waters

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Impacts of increased sediment loads on the ecology of lakes

Increased sediment loading comprises one of the most important and pervasive anthropogenic impacts on aquatic ecosystems globally. In spite of this, little is known of the overall effects of increased sediment loads on lakes. By modifying both bottom-up and top-down ecological processes and restructuring energy flow pathways, increased sediment loads not only alter biotic assemblage structure and ecological functioning significantly, but frequently result in reduced biological diversity and productivity. Although lake food-webs can be subsidised to some extent by the adsorption of organic carbon to fine sediments, trophic structure and the composition of biotic assemblages remain likely to be modified considerably. The mineralogy and particle size of sediments and the availability of nutrients, by influencing both the scale and nature of impacts, are key determinants of the overall effects of increased sediment loads on lake ecosystems. Although interactions with other global anthropogenic pressures, such as invasion by exotic species and climate change, are likely to be significant, little remains known about the nature or likely strength of those interactions. Widespread increases in sediment loading to lakes have, therefore, profound implications for the conservation and management of global aquatic biological diversity.     

Upstream trophic structure modulates downstream community dynamics via resource subsidies

In many natural systems, the physical structure of the landscape dictates the flow of resources. Despite mounting evidence that communities’ dynamics can be indirectly coupled by reciprocal among ecosystem resource flows, our understanding of how directional resource flows might indirectly link biological communities is limited. We here propose that differences in community structure upstream should lead to different downstream dynamics, even in the absence of dispersal of organisms. We report an experimental test of the effect of upstream community structure on downstream community dynamics in a simplified but highly controlled setting, using protist microcosms. We implemented directional flows of resources, without dispersal, from a standard resource pool into upstream communities of contrasting interaction structure and then to further downstream communities of either one or two trophic levels. Our results demonstrate that different types of species interactions in upstream habitats may lead to different population sizes and levels of biomass in these upstream habitats. This, in turn, leads to varying levels of detritus transfer (dead biomass) to the downstream communities, thus influencing their population densities and trophic interactions in predictable ways. Our results suggest that the structure of species interactions in directionally structured ecosystems can be a key mediator of alterations to downstream habitats. Alterations to upstream habitats can thus cascade down to downstream communities, even without dispersal.     

What's going to be on the menu with global environmental changes?

Ongoing anthropogenic change is altering the planet at an unprecedented rate, threatening biodiversity, and ecosystem functioning. Species are responding to abiotic pressures at both individual and population levels, with changes affecting trophic interactions through consumptive pathways. Collectively, these impacts alter the goods and services that natural ecosystems will provide to society, as well as the persistence of all species. Here, we describe the physiological and behavioral responses of species to global changes on individual and population levels that result in detectable changes in diet across terrestrial and marine ecosystems. We illustrate shifts in the dynamics of food webs with implications for animal communities. Additionally, we highlight the myriad of tools available for researchers to investigate the dynamics of consumption patterns and trophic interactions, arguing that diet data are a crucial component of ecological studies on global change. We suggest that a holistic approach integrating the complexities of diet choice and trophic interactions with environmental drivers may be more robust at resolving trends in biodiversity, predicting food web responses, and potentially identifying early warning signs of diversity loss. Ultimately, despite the growing body of long-term ecological datasets, there remains a dearth of diet ecology studies across temporal scales, a shortcoming that must be resolved to elucidate vulnerabilities to changing biophysical conditions.     

Identifying resilience mechanisms to recurrent ecosystem perturbations

The complex nature of ecological systems limits the unambiguous determination of mechanisms that drive resilience to natural disturbance or anthropogenic stress. Using eight-year time series data from boreal lakes with and without bloom formation of an invasive alga (Gonyostomum semen, Raphidophyceae), we studied resilience of phytoplankton communities in relation to recurring bloom impacts. We first characterized phytoplankton community dynamics in both lake types using univariate metrics of community structure (evenness, species richness, biovolume and Simpson diversity). All metrics, except species richness, were substantially altered and showed an inherent stronger variability in bloom lakes relative to reference lakes. We assessed resilience mechanisms using a multivariate time series modelling technique. The models captured clear successional dynamics of the phytoplankton communities in all lakes, whereby different groups of species were substituted sequentially over the ice-free period. The models also identified that G. semen impacts in bloom lakes were only manifested within a single species group, not across species groups, highlighting the rapid renewal of the phytoplankton communities upon bloom collapse. These results provide empirical support of the cross-scale resilience model. Cross-scale resilience could provide an explanation for the paradox that similar species richnesses are seen in bloom-forming lakes and reference lakes despite the clear difference between the community features of the two different sets of lakes investigated.     

Assessing anthropogenic impact on boreal lakes with historical fish species distribution data and hydrogeochemical modeling

Quantifying the effects of human activity on the natural environment is dependent on credible estimates of reference conditions to define the state of the environment before the onset of adverse human impacts. In Europe, emission controls that aimed at restoring ecological status were based on hindcasts from process‐based models or paleolimnological reconstructions. For instance, 1860 is used in Europe as the target for restoration from acidification concerning biological and chemical parameters. A more practical problem is that the historical states of ecosystems and their function cannot be observed directly. Therefore, we (i) compare estimates of acidification based on long‐term observations of roach (Rutilus rutilus) populations with hindcast pH from the hydrogeochemical model MAGIC; (ii) discuss policy implications and possible scope for use of long‐term archival data for assessing human impacts on the natural environment and (iii) present a novel conceptual model for interpreting the importance of physico‐chemical and ecological deviations from reference conditions. Of the 85 lakes studied, 78 were coherently classified by both methods. In 1980, 28 lakes were classified as acidified with the MAGIC model, however, roach was present in 14 of these. In 2010, MAGIC predicted chemical recovery in 50% of the lakes, however roach only recolonized in five lakes after 1990, showing a lag between chemical and biological recovery. Our study is the first study of its kind to use long‐term archival biological data in concert with hydrogeochemical modeling for regional assessments of anthropogenic acidification. Based on our results, we show how the conceptual model can be used to understand and prioritize management of physico‐chemical and ecological effects of anthropogenic stressors on surface water quality.     

Weevils and camellias in a Darwin’s race: model system for the study of eco-evolutionary interactions between species

Organisms are surrounded by their predators, parasites, hosts, and mutualists, being involved in reciprocal adaptation processes with such “biotic environment”. The concept of “coevolution”, therefore, provides a basis for the comprehensive understanding of evolutionary and ecological dynamics in biological communities and ecosystems. Recent studies have shown that coevolutionary processes are spatially heterogeneous and that traits mediating interspecific interactions can evolve rapidly in natural communities. Here, I discuss factors promoting the geographic differentiation of coevolutionary interactions, the spatial scales of the geographic structuring, and the pace of coevolutionary changes, reviewing findings in the arms race coevolution involving a long-mouthed weevil and its host camellia plant. Evolutionary, ecological, and population genetic studies on the system illuminated that viewpoints from the aspect of “coevolving biosphere” were important for predicting how ongoing anthropogenic change in global environment alter the spatiotemporal dynamics of biological communities.     

Road salt and organic additives affect mosquito growth and survival: an emerging problem in wetlands

The global increase in the application rate of road salts such as sodium chloride (NaCl) has led to concern about their negative effects on roadside habitats and freshwater ecosystems. To reduce the application rate of NaCl and minimize the ecological effects of road salts, transportation agencies are continuously seeking alternative salts such as magnesium chloride (MgCl₂) and organic additives such as beet juice and distillation byproducts. Yet, there is remarkably little information about how these road salt alternatives and additives affect aquatic communities, including their effects on mosquito populations. Nonetheless, understanding how anthropogenic factors such as road salts and salt additives affect mosquito populations could help minimize threats to human health, especially in urban environments. We used outdoor, freshwater mesocosms to experimentally investigate how the road salt MgCl₂ and two organic additives affect mosquito Culex restuans survival and emergence. Additionally, we measured changes to abiotic aspects of the environment that could affect mosquito larvae during development. We found that increased concentrations of MgCl₂ reduced mosquito survival while organic additives increased food resources that, in turn, reduced the average time to emergence for mosquitoes. Additionally, the organic additives reduced dissolved oxygen (DO) to hypoxic levels, which might negatively affect mosquito predators such as fish. In the absence of toxic concentrations of MgCl₂ or other salts, reduced predation coupled with the faster emergence times, means that organic additives, might increase mosquito population size. More comprehensive studies of multi‐trophic interactions in freshwater ecosystems should be conducted before agencies promote the application of alternative road salts and road salt additives.     

Diversity and dynamics of microbial communities in engineered environments and their implications for process stability

The availability of molecular biological tools for studying microbial communities in bioreactors and other engineered systems has resulted in remarkable insights linking diversity and dynamics to process stability. As engineered systems are often more manageable than large-scale ecosystems, and because parallels between engineered environments and other ecosystems exist, the former can be used to elucidate some unresolved ecological issues. For example, the process stability of methanogenic bioreactors containing well-defined trophic groups appears to depend on the diversity of the functional groups within each trophic level as well as on how these functional groups complement each other. In addition to using engineered systems to study general ecological questions, microbial ecologists and environmental engineers need to investigate conditions, processes, and interactions in engineered environments in order to make the ecological engineering of bioreactor design and operation more practicable.     

A cascade of evolutionary change alters consumer-resource dynamics and ecosystem function

It is becoming increasingly clear that intraspecific evolutionary divergence influences the properties of populations, communities and ecosystems. The different ecological impacts of phenotypes and genotypes may alter selection on many species and promote a cascade of ecological and evolutionary change throughout the food web. Theory predicts that evolutionary interactions across trophic levels may contribute to hypothesized feedbacks between ecology and evolution. However, the importance of 'cascading evolutionary change' in a natural setting is unknown. In lakes in Connecticut, USA, variation in migratory behaviour and feeding morphology of a fish predator, the alewife (Alosa pseudoharengus), drives life-history evolution in a species of zooplankton prey (Daphnia ambigua). Here we evaluated the reciprocal impacts of Daphnia evolution on ecological processes in laboratory mesocosms. We show that life-history evolution in Daphnia facilitates divergence in rates of population growth, which in turn significantly alters consumer-resource dynamics and ecosystem function. These experimental results parallel trends observed in lakes. Such results argue that a cascade of evolutionary change, which has occurred over contemporary timescales, alters community and ecosystem processes.     

Food‐web structure and ecosystem function in the Laurentian Great Lakes—Toward a conceptual model

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Trophic-based diversification in benthivorous charrs (Salvelinus) dwelling littoral zones of Northern lakes

Charrs of the genus Salvelinus form distinct trophic morphs living in sympatry in numerous postglacial lakes. Here we demonstrate that charrs can diversify into amphipod foraging specialists and sedentary macrobenthos consumers in the shallow-water ecosystems. This pattern was revealed in three out of six lakes under exploration supported by differences in stomach content, trophic-transmitted parasite, and stable isotope ratio analyzes. The body shape and growth rate comparison indicates that this kind of trophic-based diversification emerges at a juvenile stage and is maintained throughout the whole life. The restriction in gene flow found between the morphs allows to propose the possibility for the hereditable-based specialization to evolve. We found that those diversification phenomena are possible only in the lakes situated in vicinity of the ocean coastline, while no evidence of this split was found for inland mountain lakes. We suggest that the trophic-based diversification in the littoral ecosystems is accounted for the heterogeneity in the ecological conditions and food resources’ distribution linked to coastal wind action. This phenomenon was previously reported for the charr in Lake Fjellfrosvatn, Scandinavia, so it seems to be some universal yet poorly described kind of disruptive selection pressure for northern latitude fishes.

     

Chinese and Mongolian saline lakes: a limnological overview

More than half of China's lakes are saline (viz. have salinities > 3 g L⁻¹). Most salt lakes are in northwestern China (Tibet, Qinghai, Sinkiang, Inner Mongolia). Most Mongolian salt lakes are in the west of that country. Tectonic movements have been of the greatest importance in lake origins, but aeolian activity and deflation have also played a role. Many salt lakes in Qinghai-Tibet lie at altitudes > 4 000 m.a.s.l.; Aiding Hu (Sinkiang) lies at −154 m.a.s.l. Again, many lakes are large in area and deep. Small, shallow lakes are also common. Dimictic thermal patterns prevail in deep lakes, polymictic patterns in shallow ones. The highest salinity recorded is 555 g L⁻¹. The salinity of Qinghai Lake, the largest Chinese salt lake, is 14 g L⁻¹, but mean lake salinity on the northern Tibetan plateau is about an order of magnitude greater. Lop Nor has a salinity of ∼ 5 g L⁻¹. Dominant ions are Na and Cl; Mg, Ca, SO₄ and HCO₃ + CO₃ are important in certain lakes. Most major ions originate by weathering and leaching from rocks. pH values are generally high (often > 9.0). There are no bird or fish species confined to salt lakes, though many are associated with lakes of low or moderate salinity. Artemia occurs widely inland and in coastal salt pans, but is the only major macroinvertebrate of highly saline lakes. In lakes of only low to moderate salinity, invertebrate communities comprise widespread halotolerant freshwater forms and halophiles, some regionally endemic. Submerged and emergent macrophytes occur in lakes of low salinity, but phytoplankton species are more halotolerant. Ctenocladus circinatus, a green alga, is known from a Tibetan salt lake with a salinity of 200 g L⁻¹. There is a dearth of basic limnological information on Chinese and Mongolian salt lakes. More work in particular is needed on a variety of geographically widespread lakes to (a) document seasonal physico-chemical events, and (b) compile comprehensive biological inventories of taxa present. Chinese salt lakes are significant sites for palaeoclimatic research, for conservation purposes, and for the resolution of several important biological questions (especially of an ecological and biogeographical sort). They also have important economic values. Unfortunately, the natural existence of many appears to be threatened by decreased inflows, largely the result of human impact on catchments.     

Piscivore addition causes a trophic cascade within and across ecosystem boundaries

The addition of predators can play a key role in structuring ecological communities through both consumptive and non‐consumptive effects. Stocking of piscivorous fish in lakes and similar experimental introductions have provided fundamental evidence in support of trophic cascade theory. Yet, the impact of piscivore addition on cross ecosystem subsidies and meso‐predator resource use has not been well studied. Here, we use a replicated pond experiment to document the trophic impacts of a piscivore, cutthroat trout Onchorhynchus clarkii, on aquatic communities already containing a meso‐predatory fish (threespine stickleback Gasterosteus aculeatus) and neighbouring terrestrial ecosystems. We find that piscivore addition led to a trophic cascade that extended across an ecosystem boundary: trout addition increased the biomass and average size of insects emerging into the terrestrial system. Piscivores caused a diet shift in stickleback, a non‐consumptive effect that was likely mainly responsible for the increase in emerging insect biomass. We additionally show that heterogeneity in the strength of the pelagic trophic cascade was more closely correlated with the magnitude of diet shift (reflecting a non‐consumptive effect) than decreases in stickleback abundance (a consumptive effect). Taken together, our experiment demonstrates that the addition of a piscivore causes a trophic cascade that can extend beyond the aquatic system and suggests that non‐consumptive effects may more strongly influence the strength of a trophic cascade than has been previously recognized.     

Landscape complexity differentially benefits generalized fourth,over specialized third,trophic level natural enemies

The differential loss of higher trophic levels in the face of natural habitat loss can result in the disruption of important trophic interactions, such as biological control. Natural enemies of herbivorous pests in cropping systems often benefit from the presence of natural habitats in surrounding landscapes, as they provide key resources such as alternative hosts. However, any benefits from a biological control perspective may be dampened if this also enhances enemies at the fourth trophic level. Remarkably, studies of the influence of landscape structure on diversity and interactions of fourth trophic‐level natural enemies are largely lacking. We carried out a large‐scale sampling study to investigate the effects of landscape complexity (i.e. the proportion of non‐crop habitat in the landscapes surrounding focal study areas) on the parasitoid communities of aphids in wheat and on an abundant extra‐field plant, stinging nettle. Primary parasitoid communities (3rd trophic level) attacking the cereal aphid, Sitobion avenae, had little overlap with the communities attacking the nettle aphid, Microlophium carnosum, while secondary parasitoids (4th trophic level) showed high levels of species overlap across these two aphids (25 vs 73% shared species respectively), resulting in significantly higher linkage density and lower specialization for secondary than primary parasitoid webs. In wheat, parasitoid diversity was not related to landscape complexity for either primary or secondary parasitoids. Rates of primary parasitism were generally low, while secondary parasitism rates were high (37–94%) and increased significantly with increasing landscape complexity, although this pattern was driven by a single secondary parasitoid species. Overall, our results demonstrate that extra‐field habitats and landscape complexity can differentially benefit fourth, over third, trophic level natural enemies, and thereby, could dampen biological control. Our results further suggest that fourth trophic‐level enemies may play an important, yet understudied, role in linking insect population dynamics across habitat types.     

Habitat coupling in lake ecosystems

Lakes are complex ecosystems composed of distinct habitats coupled by biological, physical and chemical processes. While the ecological and evolutionary characteristics of aquatic organisms reflect habitat coupling in lakes, aquatic ecology has largely studied pelagic, benthic and riparian habitats in isolation from each other. Here, we summarize several ecological and evolutionary patterns that highlight the importance of habitat coupling and discuss their implications for understanding ecosystem processes in lakes. We pay special attention to fishes because they play particularly important roles as habitat couplers as a result of their high mobility and flexible foraging tactics that lead to inter-habitat omnivory. Habitat coupling has important consequences for nutrient cycling, predator-prey interactions, and food web structure and stability. For example, nutrient excretion by benthivorous consumers can account for a substantial fraction of inputs to pelagic nutrient cycles. Benthic resources also subsidize carnivore populations that have important predatory effects on plankton communities. These benthic subsidies stabilize population dynamics of pelagic carnivores and intensify the strength of their interactions with planktonic food webs. Furthermore, anthropogenic disturbances such as eutrophication, habitat modification, and exotic species introductions may severely alter habitat connections and, therefore, the fundamental flows of nutrients and energy in lake ecosystems.     

Extreme nomadism in desert waterbirds: flights of the banded stilt

In contrast to well-studied Northern Hemisphere birds with spatially and temporally predictable seasonal migrations, waterbirds in desert biomes face major challenges in exploiting stochastic, rich, yet short-lived resource pulses in vast arid landscapes, leading to the evolution of nomadic behaviour. An extreme example is the banded stilt (Cladorhynchus leucocephalus), an opportunistic colonial breeder at remote inland salt lakes after infrequent rain events. Using satellite telemetry on 21 birds (tracked for a mean of 196.2 days), we reveal extensive, rapid and synchronized movement among individuals to and from salt lakes. Two birds left coastal refugia for the inland following rain, flying 1000–2000 km, while 12 others rapidly moved a mean of 684 km (range 357–1298 km) away from drying inland sites to the coast. Two individuals moved longitudinally across the continent, departing and arriving at the same points, yet travelling very different routes; one bird moving more than 2200 km in less than 2.5 days, the other more than 1500 km in 6 days. Our findings reveal movements nearly twice as long and rapid as recorded in other desert waterbirds. We reveal capability to rapidly detect and exploit ephemeral wetland resource pulses across the stochastic Australian desert.     

Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

Climate change, desertification, salinisation of soils and the changing hydrology of the Earth are creating or modifying microbial habitats at all scales including the oceans, saline groundwaters and brine lakes. In environments that are saline or hypersaline, the biodegradation of recalcitrant plant and animal polysaccharides can be inhibited by salt-induced microbial stress and/or by limitation of the metabolic capabilities of halophilic microbes. We recently demonstrated that the chitinolytic haloarchaeon Halomicrobium can serve as the host for an ectosymbiont, nanohaloarchaeon ‘Candidatus Nanohalobium constans’. Here, we consider whether nanohaloarchaea can benefit from the haloarchaea-mediated degradation of xylan, a major hemicellulose component of wood. Using samples of natural evaporitic brines and anthropogenic solar salterns, we describe genome-inferred trophic relations in two extremely halophilic xylan-degrading three-member consortia. We succeeded in genome assembly and closure for all members of both xylan-degrading cultures and elucidated the respective food chains within these consortia. We provide evidence that ectosymbiontic nanohaloarchaea is an active ecophysiological component of extremely halophilic xylan-degrading communities (although by proxy) in hypersaline environments. In each consortium, nanohaloarchaea occur as ectosymbionts of Haloferax, which in turn act as scavenger of oligosaccharides produced by xylan-hydrolysing Halorhabdus. We further obtained and characterised the nanohaloarchaea–host associations using microscopy, multi-omics and cultivation approaches. The current study also doubled culturable nanohaloarchaeal symbionts and demonstrated that these enigmatic nano-sized archaea can be readily isolated in binary co-cultures using an appropriate enrichment strategy. We discuss the implications of xylan degradation by halophiles in biotechnology and for the United Nation's Sustainable Development Goals.