Fish habitat preferences in large streams of southern France

1. Relationships between fish and their habitat over whole geographic regions, which are evident from studies of many streams and species, can improve understanding of lotic communities and provide reliable management tools. Nevertheless, most habitat preference studies have been based on single sites, and confined to small streams and to game species.
2. Regional habitat preference models, based on local velocity, depth and roughness, were developed for twenty-four species and their size classes commonly found in large European streams. Fish surveys were conducted in six large streams in southern France over an 8-year period. To limit the influences of habitat variables other than those studied, we estimated fish preferences within each survey and averaged this information across surveys. Preferences were fitted with confidence intervals and their sensitivity to field uncertainty was evaluated.
3. Most species and size classes had significant preferences for local habitat conditions which were consistent across the region. Habitat preferences predominant in the region overall were not always observed at any one site, but habitat conditions preferred on average in the region were never actually avoided locally. These results support the use of regional preference models for fish and the development of similar models for other lotic groups whose sensitivity to local habitat conditions has been reported elsewhere.     

The influence of potential predators on the habitat preferenda of emerging brown trout

Much research has focused on the developmental behaviour of fish and it has been shown that their sensory and physical capabilities evolve very quickly during their early life. Thus, ontogenesis could influence fishes preferences for particular environmental factors. Little is known about the habitat preferences of trout during the post-emergence phase and it is not known if they correspond to the preference curves established by the PHABSIM method for the' alevin phase'. Here, the downstream movement and habitat preferences of young emerging trout were studied in a flume. In the absence of predators, alevins preferred a water depth of 20 to 30 cm and pebble rather than gravel substratum. When emergence occurred in an area with 1⁺ trout and sculpin, Cottus gobio , almost all the emergent trout remained cryptic. When visible, most of them were in the shallowest area (10cm depth) where their preference for pebble substratum was less marked. The presence of 1⁺ trout and sculpin increased the movement downstream of young trout by 20% without changing the general and diel patterns of catches. Their presence also reduced the initial growth of 0⁺ trout.     

Brown trout spawning habitat selection preferences and redd characteristics in the Credit River, Ontario

Brown trout Salmo trutta redds in the Credit River, Ontario, were enumerated and assessed for physical, location and cover feature characteristics during the 2002 spawning season. Hydraulic habitats were classified on the basis of channel morphology and availability recorded. Combined use and availability data were used to assess habitat selection preferences and test for significant differences. Significant preferences for upstream pool and riffle habitat were found, but all available habitat types were used to some degree. Non‐preferred habitat redds were significantly larger than those located in preferred habitats and more likely to be found in association with woody debris cover. Larger redds were interpreted as indicative of larger fish. The use of non‐preferred downstream habitats by larger fish was further interpreted in the context of overwinter habitat requirements to reflect possible trade‐offs between reproductive and adult over‐winter survival requirements resulting in the selection of habitat for multiple life‐history functions. Results suggest that redd density alone should not be used to infer critical autumn habitat requirements for brown trout.     

Spatial microhabitat selection by Biomphalaria pfeifferi in a small perennial river in Tanzania

A study was carried out in the Mlali river in south-central Tanzania with two aims. First, to determine microhabitat availability in two sites (A and B) with respect to water depth, water velocity and dominant substratum type. Second, to assess microhabitat use by Biomphalaria pfeifferi, the intermediate host snail of intestinal schistosomiasis and to investigate whether these snails show preferences for certain microhabitats. The two sites differed significantly with respect to width, water depth, water velocity and substratum composition. It is suggested that the absence of B. pfeifferi from site B is mainly associated with the high water velocities at that site, where 62% of the measurements exceeded30 cm s^-1. In site A, the microhabitat use by 327 B. pfeifferi snails was assessed by means of direct observation. No significant relationships were found between snail size and the habitat variables investigated, indicating that snail size appeared to be of no importance in spatial microhabitat selection. B. pfeifferi snails showed statistically significant preferences for shallow water (depth: 2–7 cm) and the preferred water velocities ranged between 12 and 21 cm s^-1 with an estimated optimum at13.3 cm s^-1. No statistically significant preferences for substratum type were found. This revised version was published online in August 2006 with corrections to the Cover Date.     

Do Predators Condition the Distribution of Prey within Micro Habitats? An Experiment with Stoneflies (Plecoptera)

The selection of habitat by macroinvertebrates living in running waters may be influenced by the physical characteristics of the substratum, as well as by the presence of other species. In this study, an artificial river with three different substrata (pebbles, detritus, and leaves) was utilized to analyze the microhabitat preference of two Plecoptera prey species (Amphinemura sulcicollis and Brachyptera risi), both in absence and in presence of a Plecoptera predator species (Perla marginata). In the absence of predators, both prey species showed a clear preference for the leaf microhabitat. When the predators were present, only Brachyptera risi showed a change of microhabitat selection, with a decrease of leaves and an increase of pebbles and detritus utilization. Amphinemura sulcicollis did not change their substratum utilization. This study demonstrates that the presence of a predator may affect microhabitat selection through a switch from the preferred to the less preferred substrata, although not all species change their habitat utilization in response to predator presence. (© 2010 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Habitat selection by juvenile Atlantic salmon: the interaction between physical habitat and abundance

The effect of physical river habitat variables on the distribution of juvenile Atlantic salmon Salmo salar L. in the Rivière de la Trinité, Québec, Canada, was examined using generalized additive modelling. A survey of Atlantic salmon fry and parr densities and habitat variables (flow velocity, water column depth and substratum size) was conducted in the summer months from 1984 to 1992. Clear patterns of habitat use existed: specific ranges of habitat variables were selected, with parr preferring greater velocities, depths and substratum sizes than fry. There was a large variation, however, in juvenile densities for given velocities, depths or substratum sizes, with this variation being greatest in optimal habitats. On examination of an individual year, interaction between the variables was found to explain some of the variation. On a year‐to‐year basis the juvenile Atlantic salmon population was found to exhibit an 'Ideal Free Distribution', which resulted in greatest variation in optimal habitats with year‐to‐year changes in population abundance.     

Functional responses in the habitat selection of a generalist mega‐herbivore,the African savannah elephant

Resource selection function (RSF) models are commonly used to quantify species/habitat associations and predict species occurrence on the landscape. However, these models are sensitive to changes in resource availability and can result in a functional response to resource abundance, where preferences change as a function of availability. For generalist species, which utilize a wide range of habitats and resources, quantifying habitat selection is particularly challenging. Spatial and temporal changes in resource abundance can result in changes in selection preference affecting the robustness of habitat selection models. We examined selection preference across a wide range of ecological conditions for a generalist mega‐herbivore, the African savanna elephant Loxodonta africana, to quantify general patterns in selection and to illustrate the importance of functional responses in elephant habitat selection. We found a functional response in habitat selection across both space and time for tree cover, with tree cover being unimportant to habitat selection in the mesic, eastern populations during the wet season. A temporal functional response for water was also evident, with greater variability in selection during the wet season. Selection for low slopes, high tree cover, and far distance from people was consistent across populations; however, variability in selection coefficients changed as a function of the abundance of a given resource within the home range. This variability of selection coefficients could be used to improve confidence estimations for inferences drawn from habitat selection models. Quantifying functional responses in habitat selection is one way to better predict how wildlife will respond to an ever‐changing environment, and they provide promising insights into the habitat selection of generalist species.     

Competitive habitat displacement of brown trout by Siberian sculpin: the role of size and density

Habitat competition in brown trout Salmo trutta and Siberian sculpin Cottus poecilopus was investigated by varying density, fish size, and species composition in stream channels providing areas of different substratum particle sizes. In allopatry, both small (52 ± 4 mm L _T) and large (86 ± 6 mm L _T) brown trout exhibited strong preference for the intermediate (8–11 cm diameter) and large (17–21 cm) gravel substrata. There was a tendency for more brown trout to occupy finer (2–4 cm) substrata with increasing density, in particular for large brown trout. Also, more small brown trout were observed on finer substrata when tested with large brown trout, suggesting interspecific competition for restricted space. Both small (56 ± 6 mm L _T) and large (88 ± 10 mm L _T) Siberian sculpin preferred the large gravel in all tests, and did not change their substratum preferences much with increasing densities, suggesting higher tolerance for 'crowding'. The large Siberian sculpin preferred the coarser substratum, and the largest individuals were consistently found on it. In sympatry with large Siberian sculpin, habitat displacement of brown trout occurred, indicative of interspecific competition. A higher proportion of small and large brown trout occupied the finer substrata than in allopatry. Habitat selection by large Siberian sculpin appeared to be unaffected by species composition and density. Small Siberian sculpin were displaced to finer substrata when tested with large Siberian sculpin, suggesting intraspecific competition. The results indicate that Siberian sculpin are potential habitat competitors for young brown trout.     

Suitability criteria for spawning habitat of riverine European grayling

Generalized suitability curves, developed for the spawning habitat of grayling Thymallus thymallus by combining new preference data with information available in the literature, provided optimal ranges for dominant substratum size, water depth and mean water velocity. These were 16–32 mm, 30–40 cm, and 50–60 cm s⁻¹, respectively.     

Local and ecoregion effects on fish assemblage structure in tributaries of the Rio Paraíba do Sul, Brazil

1.  We examined the effects of physical and chemical habitat variables and ecoregions on species occurrence and fish assemblage structure in streams of the Paraíba do Sul basin, in southeast Brazil.
2.  Fish and environmental data were collected from 42 sites on 26 first to fourth order streams (1 : 50 000 map scale) in three ecoregions. The sites occurred in one valley and two plateau ecoregions at altitudes of 40–1080 m and distances of 0.1–188 km from the main channel of the Rio Paraíba do Sul. Physical habitat (substratum, riparian cover, habitat types) and water quality (dissolved oxygen, pH, temperature and conductivity) variables were measured at each sampling site.
3.  A total of 2684 individuals in 16 families and 59 species were recorded.
4.  Ecoregion was a better predictor of the fish assemblage than the other environmental variables, according to the differences between the mean within-class and mean between-class similarities in assemblage data.
5.  Differing landscape characteristics were associated with differing local variables and thereby with differing fish assemblage structures. Riffles, shrub, grass, dissolved oxygen, conductivity and temperature were closely related to fish assemblage structure.
6.  Fish assemblages in sites far from the main river and at higher altitudes also differed from those near the Paraíba do Sul main channel, presumably as a result of differences in connectivity, covarying environmental factors and anthropogenic influence.
7.  These results reinforce the importance of understanding how stream communities are influenced by processes and patterns operating at local and regional scales, which will aid water resource managers to target those factors in their management and rehabilitation efforts.     

Relationships between fishes and habitat in rainforest streams in Sabah, Malaysia

Distinct fish assemblages were found at the mesohabitat scale in 14 streams in eastern Sabah, Malaysia. Sites were designated a priori as pool, run or riffle on the basis of physical habitat structure and properties. Principal components analysis of physical habitat data confirmed the validity of the a priori designation with a major axis of three correlated variables: water velocity, depth and substratum type. Canonical discriminant analysis on fish abundance and biomass data confirmed the existence of a specialized assemblage of fishes from riffle areas of all streams. Overall, pool and run assemblages were highly variable, dependent on stream size, but also variable between streams of the same size. Multiple regression of species richness, diversity, abundance and biomass data on principal components revealed significant but low correlations with measured habitat variables. Riffle habitats showed lower species richness and diversity but high abundance. The fish assemblage in riffles was dominated by balitorid species, specialized for fast-water conditions. Pool assemblages had the highest species diversity and were dominated by cyprinid species of a number of morphological and ecological guilds. Run assemblages were intermediate in assemblage characteristics between riffle and pool assemblages. Between-stream variation in assemblage composition was less than within-stream variation. Of 38 species collected, seven could be designated as riffle specialists, 18 as pool specialists and 13 as ubiquitous, although most of the latter showed size-specific habitat use with larger size classes found in slower, deeper water.     

Spatio-temporal patterns of fish assemblages in a large regulated alluvial river

1. The River Durance, the last alpine tributary of the River Rhône, is a large, braided alluvial hydrosystem. Following large-scale regulation, flow downstream of the Serre-Ponçon dam has been maintained at 1/40th of previous annual mean discharge. To assess the effects of historical disturbances, fish assemblages and habitat use were analysed during five summers in a representative reach of the middle Durance.
2. Habitat availability and use were assessed with a multi-scale approach including the variables water depth, current velocity, roughness height of substratum, amount of woody debris and lateral/longitudinal location. Eighteen fish species were sampled by electrofishing in 289 habitat sample units.
3. Partial least square (PLS) regression showed that taxa were mainly distributed according to relationships between their total length and water depth/velocity variables. Fish assemblage composition was also related to roughness height as well as distance from the bank or to the nearest large woody debris. However, PLS regression revealed no significant differences in habitat selection between two periods of varying hydromorphological stability.
4. Fish distribution patterns and density were related to proximity to the bank and cover, indicating that local scale variables need to be considered in conservation and restoration programmes.     

Summer habitat relationships of barbels in south‐west Spain

An analysis was made of the associations with local habitat features of barbels ( Barbus sp.) of a Mediterranean river basin. The analysis was based on the presence data from sampling the upper, middle, and lower reaches of 31 rivers in the middle Guadiana River basin (south‐west Spain). Numerous local habitat variables were determined, including the river's size and substratum, physicochemical variables of water, and the aquatic and riparian vegetation. For each species, a univariate analysis was performed using preference indices, and logistic regression was used to construct a parsimonious multivariate model and Gaussian response models with the most influential variables, quantifying the species' limits of tolerance. Distinct habitat associations for every species were obtained, mainly relating Barbus comiza to the larger habitats and higher water levels, Barbus microcephalus to the maintenance of lotic conditions and Barbus sclateri to more fluctuating rivers. Barbus steindachneri showed a different habitat relationship from that of the genetically almost identical B. comiza . Cover played a significant role in all but B. comiza .     

Effects of substratum stability on diversity of stream invertebrates during baseflow at two spatial scales

1. The effects of substratum stability on the diversity of stream invertebrates were assessed at two spatial scales in a Japanese stream during baseflow, from May to June 1998. Deposition and erosion were examined separately as distinct elements of substratum stability by a newly developed method using small steel pins. Stream invertebrates were sampled after 28 days of measurement of substratum stability. We also measured physical environmental variables, current velocity and depth, and food resource parameters including periphyton and particulate organic matter (POM) standing crops.
2. At the scale of the habitat patch, the effects of substratum stability on invertebrates were overwhelmed by those of POM standing crop. Moreover, higher taxon richness at high abundance may simply result from a higher likelihood of more taxa being included in samples. Therefore, this small scale revealed no role for substratum stability in explaining spatial pattern of community diversity.
3. At the reach scale ( n =10), taxon richness and evenness peaked at an intermediate level of deposition, whereas invertebrate abundance did not show any significant relationship. This result, and the pattern of relative abundance of common taxa, implies that the diversity of stream invertebrates was determined by subtle substratum movements and by the habitat preference of each taxon.
4. The difference in the determinant of community parameters between the habitat patch and the reach affirm the importance of a cross-scale analysis to choose an appropriate spatial scale for investigating the community structure of stream invertebrates. Prominent effects of substratum stability, particularly the deposition of substratum particles, during baseflow suggest that subtle and constant movement of small substratum particles can contribute to determine the diversity of stream invertebrates.     

Males and females contribute differently to the evolution of habitat segregation driven by hybridization

Costly heterospecific mating interactions, such as hybridization, select for prezygotic reproductive isolation. One of the potential traits responding to the selection arising from maladaptive hybridization is habitat preference, whose divergence results in interspecific habitat segregation. Theoretical studies have so far assumed that habitat preference is a sexually shared trait. However, male and female habitat preferences can experience different selection pressures. Here, by combining analytical and simulation approaches, we theoretically examine the evolution of sex-specific habitat preferences. Habitat segregation can have demographic consequences, potentially generating eco-evolutionary dynamics. We thus explicitly consider demography in the simulation model. We also vary the degrees of species discrimination to examine how mate choice influences the evolution of habitat preferences. Results show that both sexes can reduce hybridisation risk by settling in the habitats where abundant conspecific mates reside. However, when females can discriminate species, excess conspecific male aggregation intensifies male–male competition for mating opportunities, posing an obstacle to conspecific aggregation. Meanwhile, conspecific female aggregation attracts conspecific males, by offering the mating opportunity. Therefore, under effective species discrimination, females play a leading role in initiating habitat use divergence. Simulations typically result in either the coexistence with established habitat segregation or the extinction of one of the species. The former result is especially likely when the species differ to some extent in habitat preferences upon secondary contact. Our results disentangle the selection pressures acting on male and female habitat preferences, deepening our understanding of the evolutionary process of habitat segregation due to hybridization.     

Preferable summering habitat of returning adult masu salmon in the natal stream

The preferable summering habitat of returning adult masu salmon Oncorhynchus masou Brevoort was examined in 31 study pools of a small stream in northern Hokkaido, Japan. A total of 23 salmon were captured and were present in only 10 of the study pools. Female salmon were found to be significantly larger than male salmon. Habitat characteristics were expressed by six environmental variables: mean water depth, maximal cover size, mean current velocity, pool volume, substratum coarseness and cover area. There were no significant differences between the pools with salmon and those without salmon in terms of substratum coarseness and cover area. However, significant differences were found in mean water depth, maximal cover size, mean current velocity and pool volume. The analysis found that the pools with salmon were discriminated from those without salmon at a level of 93.5% which was determined by the six environmental variables. Our results revealed that the returning adult salmon selectively used the pools with greater depth, large cover and slow current velocity as their preferable summering habitat. The results also found that the summering habitat of salmon can be estimated by measuring only six environmental variables. Therefore, these variables can be considered useful parameters in determining the summering habitat components of returning adult masu salmon and can contribute to the conservation and restoration strategy of this species by providing a better understanding of the relationship between fish and their habitat.     

Reproductive success of Tree Pipits Anthus trivialis in relation to habitat selection in conifer plantations

Aspects of the reproductive success of Tree Pipits Anthus trivialis were examined in relation to broad‐scale habitat and nest‐site selection in Thetford Forest, a coniferous plantation forest in eastern England. Three habitat classes were defined corresponding to previously reported densities of Tree Pipits: clearfell and recently planted stands (habitat class A: low density), stands 2–5 years old (B: high density) and stands 6 years or older (C: low density). The preference for 2–5‐year‐old stands indicated by higher densities was supported by the timing of territory settlement. Tree Pipits also showed distinct preferences for nest‐site characteristics that were relatively consistent across habitat classes and throughout the breeding season. At the ‘habitat scale’, results were consistent with the predictions of the ideal despotic distribution model. First clutches were laid significantly earlier in the preferred habitat class B. Overall nesting success (i.e. the proportion of nests producing fledglings), but not clutch size, also varied between habitats, being greater in habitat classes B and C than in habitat class A. The variation in overall nesting success between habitats was primarily driven by low nest survival rates during the laying/incubation period in clearfell and recently planted stands. Nest survival rates during the nestling period were lower in the preferred 2–5‐year‐old (and older) stands and declined over the course of the study. Preferences for nest‐site characteristics (at least for those that were measured) provided no apparent benefit to nest survival rates. Overall nesting success thus appeared to be determined at the habitat scale, perhaps because the broad differences in cover between habitats affected the likelihood of nest predation (the main cause of nest failure). It is suggested that the very low nesting success experienced by Tree Pipits in clearfell and new stands may be one factor in the species’ relative avoidance of this habitat and preference for 2–5‐year‐old stands.     

Aspects of habitat selection in the mosquitofish gambusia affinis

Laboratory experiments were performed to determine behavioral preferences of Gambusia affinis for habitat variables in partitioned aquaria. The fish preferred calm water, dark-colored substrates and subsurface vegetation providing lateral concealment. Floating cover, which obstructed access to the surface, was avoided. Lack of preference for real over plastic plant cover indicates that visual rather than chemical cues are involved. These laboratory preferences correspond to the reported microhabitat distribution of G. affinis in nature and indicate the presence of an active habitat preference, as opposed to passive habitat correlation, in this species. Species-specific habitat preferences, which may be narrower where a species occurs sympatrically with its congeners, probably form part of a reproductive isolating mechanism.     

Sexual segregation by Masai giraffes at two spatial scales

In this paper alternative explanations for observed patterns of sexual segregation by giraffes are examined at two spatial scales: within-habitats and within-landscape. Habitats are defined as recognizable plant associations and the landscape as the collection of all available habitat types. The study was conducted in Mikumi National Park, Tanzania. At the within-landscape level, all sex and age classes of giraffes exhibited high degrees of preference for riverine habitats. Sex differences in habitat selection were mostly due to females with young, who tended to select open floodplain habitats in which their vigilance time was lowest. Males, and females without young, preferred more heavily-wooded habitat. Habitat preferences were not related to observed habitat-specific forage intake rates for either males or females. Within habitats, male and female giraffes selected different feeding heights, males feeding higher in the canopy than females. Females showed a strong tendency to generalize with respect to feeding height. It is suggested that a sexual dimorphism–body size hypothesis provides a parsimonious explanation for the observed feeding height selection patterns, whereas a reproductive strategy hypothesis can explain sex-differences in habitat selection patterns within the landscape.     

Differential habitat utilization by patas monkeys (Erythrocebus patas) and tantalus monkeys (Cercopithecus aethiops tantalus) living sympatrically in northern Cameroon.

In order to obtain reliable evidence for differences in habitat preferences between two closely related savanna-dwelling primate species, namely, patas monkeys (Erythrocebus patas) and tantalus monkeys (Cercopithecus aethiops tantalus), I collected data on vegetation and patterns of range use concurrently at a single study site, Kala Maloue, Cameroon, in a similar manner for a group of each species. Kala Maloue consisted of 64% grassland mostly dominated by Gramineae spp. and the rest was woodland. Tantalus monkeys showed preference for woodland, especially gallery forest, much more than did the patas irrespective of the season. Moreover, patas preferentially established their home range in grassland in the wet season. Interspecific and seasonal differences in habitat preferences could be interpreted on the basis of interspecific and seasonal differences in preferences for main food. In dry season, tantalus utilized water-containing areas at a frequency closely in proportion to the availability of such areas while the patas utilized water-containing areas more frequently than expected. This is because tantalus established a smaller home range along the river where water was never completely depleted throughout the dry season. Both the patas and the tantalus preferred woodland to grassland as sleeping sites possibly owing to predation avoidance. Both the daily travel distance per group weight and the home range size per group weight were greater for patas than for tantalus partly because of higher preference for grassland with low habitat quality in the case of patas. It is suggested, however, that high locomotive ability enabled patas to effectively utilize small and widely dispersed items of food such as grasshoppers and to explore areas with high availability of food and water and with preferable sleeping sites.