Rhodotorula lamellibrachii sp. nov., a new yeast species from a tubeworm collected at the deep-sea floor in Sagami Bay and its phylogenetic analysis

A new species of the genus Rhodotorula was isolated from a tubeworm (Lamellibrachia sp.) collected at a depth of 1156 m in Sagami Bay, Japan. Strain SY-89 had physiological properties quite similar to R. aurantiaca. Two phylogenetic trees, one based on internal transcribed spacer (ITS) regions and 5.8S rDNA sequences and the other based on the D1/D2 region of the large subunit (26S) rDNA sequences, united strain SY-89 to the type strain of Sakaguchia dacryoides through a considerable evolutionary distance. Strain SY-89 was differentiated from S. dacryoides by the G+C content of the nuclear DNA and differences in the ability to utilize specific carbon and nitrogen compounds. The low complementarity of strain SY-89 DNA to that of the type strain of S. dacryoides confirmed that this strain was genetically unrelated to previously known species. The tubeworm isolates are described as R. lamellibrachii sp. nov. The type strain of R. lamellibrachii is strain SY-89 (= JCM 10907). R. lamellibrachii formed a cluster with Erythrobasidium hasegawianum, R. lactosa, S. dacryoides and Sporobolomyces elongatus on the ITS and 5.8S rDNA phylogenetic tree. These five species shared a signature sequence in 26S rDNA, although this relationship was not supported by phylogeny based on the D1/D2 region of 26S rDNA.     

Rexiella,a new name for Rexia S. Stenroos,Pino-Bodas & Ahti (2018), non Rexia D. A. Casamatta,S. R. Gomez & J. R. Johansen (2006)

A new generic name, Rexiella, is published to replace the recently published name Rexia S. Stenroos, Pino-Bodas and Ahti, which turned out to be an illegitimate later homonym of the cyanobacterial genus Rexia D. A. Casamatta, S. R. Gomez and J. R. Johansen.     

On the identity of Riccia teneriffae S.W.Arnell (Marchantiophyta: Ricciaceae) and a note on R. cavernosa Hoffm. in the Canary Islands

Abstract

We revised both the holotype and an isotype of Riccia teneriffae S.W.Arnell 1962 and additionally revised our own collections of Riccia cavernosa Hoffm. 1795 from the Canary Islands. Since the types of R. teneriffae represent R. cavernosa, and the latter name precedes the former, R. teneriffae should be treated as a synonym of R. cavernosa. In the Canary Islands, R. cavernosa appears to be rare. It has been found on La Gomera, Gran Canaria, Lanzarote, and Tenerife. We report it as new to Fuerteventura. R. cavernosa inhabits ephemeral, thin layers of mud. Very rarely it occurs on basaltic pyroclasts. SEM images of spores are presented. The local distribution is mapped.     

A Primer of Ecology with R by STEVENS,M. H. H.

A Primer of Ecology with R (M. H. H. Stevens) Péter Sólymos Handbook on Analyzing Human Genetic Data: Computational Approaches and Software (S. Lin and H. Zhao, Editors) Peter M. Visscher From Finite Sample to Asymptotic Methods in Statistics (P. K. Sen, J. M. Singer, and A. C. Pedroso de Lima) Miodrag Lovric Dynamic Linear Models with R (G. Petris, S. Petrone, and P. Campagnoli) Helio S. Migon Functional Data Analysis with R and Matlab (J. O. Ramsay, G. Hooker, and S. Graves) Hervé Cardot Continuous Bivariate Distributions, 2nd edition (N. Balakrishnan and C.‐D. Lai) Márcia D'Elia Branco Brief Reports by the Editor The Elements of Statistical Learning: Data Mining, Inference, and Prediction, 2nd edition. (T. Hastie, R. Tibshirani, and J. Friedman) Gene Expression Studies Using Affymetrix Microarrays (H. Göhlmann and W. Talloen)     

Comparison between Solanum torvum Sw. and S. melongena L. after Ralstonia solanacearum inoculation

Bacterial wilt, caused by Ralstonia solanacearum, is one of the most devastating plant diseases, affecting some economically important Solanaceae crops. In contrast, Solanum torvum, also known as wild eggplant, does not wilt when infested with R. solanacearum. In order to describe the mechanism underlying the response of S. torvum, it was compared with the cultivated eggplant, S. melongena, when both were infected with the same R. solanacearum strain. No wilting occurred in S. torvum, although the bacteria colonised roots and stems in both species within the first 24 h. There were marked differences beyond 24 h, consisting of high bacterial mortality in S. torvum. Using the calli model, our investigations revealed an increase in cell wall monoamine oxidase activity in S. torvum after R. solanacearum inoculation, which did not occur in S. melongena.     

Transfer of Two Burkholderia and An Alcaligenes Species to Ralstonia Gen. Nov.

Based on the results of phenotypic characterization, cellular lipid and fatty acid analysis, phylogenetic analysis of 16S rDNA nucleotide sequences and rRNA-DNA hybridization, Burkholderia pickettii, Burkholderia solanacearum and Alcaligenes eutrophus are transferred to the new genus Ralstonia, and Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. nov., Ralstonia solanacearum (Smith 1896) comb, nov., and R. eutropha (Davis 1969) comb. nov. are proposed. The type species of the new genus is R. pickettii. Type strain of R. pickettii is ATCC 27511^T, of R. solanacearum is ATCC 10696^T, and of R. eutropha is ATCC 17697^T.     

Festuca alpestris R. et S. nelle Prealpi bellunesi

Abstract

Festuca alpestris R. et S. in the Alps near Belluno.—Some populations of Festuca from the F. varia aggr. occurring in the south-eastern Alps near Belluno have been recognized as belonging to F. alpestris R. et S. The relationships between this species and F. calva (Hackel) Richter from the Julian Alps are discussed and the diacritic characters are newly defined.     

Applied Spatial Data Analysis with R. by BIVAND, R. S., PEBESMA, E. J., and GOMEZ-RUBIO, V.

Applied Spatial Data Analysis with R (R. S. Bivand, E. J. Pebesma, and V. Gomez‐Rubio) Jay M. Ver Hoef Bayesian Disease Mapping: Hierarchical Modeling in Spatial Epidemiology (A. B. Lawson) J. Law Disease Surveillance: A Public Health Informatics Approach (J. S. Lombardo and D. L. Buckeridge, editors) Iris Pigeot Survival Analysis for Epidemiologic and Medical Research (S. Selvin) M. G. Valsecchi Survival and Event History Analysis: A Process Point of View (O. O. Aalen, O. Borgan, and H. K. Gjessing) Patricia Grambsch Nonlinear Dimensionality Reduction (J. A. Lee and M. Verleysen) Haonan Wang Model Selection and Model Averaging (G. Claeskens and N. L. Hjort) Thomas M. Loughin Meta‐Analysis of Binary Data Using Profile Likelihood (D. Böhning, R. Kuhnert, and S. Rattanasiri) Eloise Kaizar Wavelet Methods in Statistics with R (G. P. Nason) Jeffrey S. Morris Adaptive Design Theory and Implementation Using SAS and R (M. Chang) Feifang Hu Ecological Models and Data in R (B. M. Bolker) Rachel M. Fewster Applied Multiway Data Analysis (P. M. Kroonenberg) Renato Coppi Brief Reports by the Editor Sampling of Populations: Methods and Applications, 4th edition (P. S. Levy and S. Lemeshow) Applied Survival Analysis: Regression Modeling of Time‐to‐Event Data, 2nd edition (D. W. Hosmer, S. Lemeshow, and S. May) SAS for Data Analysis: Intermediate Statistical Methods (M. G. Marasinghe and W. J. Kennedy) Advances in Mathematical and Statistical Modeling (B. C. Arnold, N. Balakrishnan, J. M. Sarabia, and R. Mínguez, editors) An Introduction to Generalized Linear Models, 3rd edition (A. J. Dobson and A. G. Barnett) Design and Analysis of Bioavailability and Bioequivalence Studies, 3rd edition (S.‐C. Chow and J.‐P. Liu)     

Isozyme variability in species of the genus Drosophila. III. Qualitative comparison of the esterases of D. aldrichi and D. mulleri

Two closely related species, Drosophila aldrichi and D. mulleri, are compared on the basis of their esterase isozyme patterns after starch gel electrophoresis. Comparable esterases between the two species are identified by substrate specificity, inhibition, and enhancement of esterase activity by various agents. The extensive electrophoretic variability of most of the esterases in nature is described and data relating to the inheritance of the various enzyme forms are presented.This work was supported (in part) by a U.S. Public Health Service research grant (GM 11609 to W. S. Stone and M. R. Wheeler) and a training grant (2 T1-GM 337-07 to R. P. Wagner et al.) from the National Institutes of Health.     

Piper relictum sp. nov. (Piperaceae) from northern Western Ghats,India

A new species of Piper, P. relictum Lekhak, S. S. Kambale & S. R. Yadav sp. nov. is described and illustrated. It grows as a climber on the edges of high altitude lateritic plateaus in evergreen forests of the northern Western Ghats in India. The new species is similar to P. galeatum, but differs in the characters of the male inflorescence.     

Rhinomonas nottbecki n. sp. (Cryptomonadales) and Molecular Phylogeny of the Family Pyrenomonadaceae

The cryptomonad Rhinomonas nottbecki n. sp., isolated from the Baltic Sea, is described from live and fixed cells studied by light, scanning, and transmission electron microscopy together with sequences of the partial nucleus‐ and nucleomorph‐encoded 18S rRNA genes as well as the nucleus‐encoded ITS1, 5.8S, ITS2, and the 5′‐end of the 28S rRNA gene regions. The sequence analyses include comparison with 43 strains from the family Pyrenomonadaceae. Rhinomonas nottbecki cells are dorsoventrally flattened, obloid in shape; 10.0–17.2 μm long, 5.5–8.1 μm thick, and 4.4–8.8 μm wide. The inner periplast has roughly hexagonal plates. Rhinomonas nottbecki cells resemble those of Rhinomonas reticulata, but the nucleomorph 18S rRNA gene of R. nottbecki differs by 2% from that of R. reticulata, while the ITS region by 11%. The intraspecific variability in the ITS region of R. nottbecki is 5%. In addition, the predicted ITS2 secondary structures are different in R. nottbecki and R. reticulata. The family Pyrenomonadaceae includes three clades: Clade A, Clade B, and Clade C. All Rhinomonas sequences branched within the Clade C, while the genus Rhodomonas is paraphyletic. The analyses suggest that the genus Storeatula is an alternating morphotype of the genera Rhinomonas and Rhodomonas and that the family Pyrenomonadaceae includes some species that were described multiple times, as well as novel species.     

Pohlia andrewsii J. Shaw in the U.S.S.R.

Abstract

P. andrewsii appears to be widespread in the arctic regions of the U.S.S.R. and also in mountains of southern Siberia, the Altai Mountains. Except in the mountains of Central and Northern Europe the range of P. andrewsii does not overlap with P. annotina and P. camptotrachela.     

The fate of ribosomal RNA genes in spontaneous polyploid dogrose hybrids [Rosa L. sect. Caninae (DC.) Ser.] exhibiting non‐symmetrical meiosis

Dogroses represent an exceptional system for studying the effects of genome doubling and hybridization: their asymmetrical meiosis enables recombination in bi‐parentally inherited chromosomes but prevents it in maternally inherited ones. We employed fluorescent in situ hybridization, genome skimming, amplicon sequencing of genomic and cDNA as well as conventional cloning of nuclear ribosomal DNA in two phylogenetically distinct pentaploid (2n = 5x = 35) species, Rosa canina and Rosa inodora, and their naturally occurring reciprocal hybrids, Rosa dumalis (5x) and Rosa agrestis (5x, 6x). Both progenitor species differed in composition, meiotic behaviour and expression of rDNA loci: R. canina (five 18S and 5–8 5S loci) was dominated by the Canina ribotypes, but R. inodora (four 18S loci and 7–8 5S loci) by the Rubiginosa ribotype. The co‐localized 5S/18S loci occurred on either bivalent‐forming (R. canina) or univalent‐forming (R. inodora) chromosomes. Ribosomal DNA loci were additively inherited; however, the Canina ribotypes were dominantly expressed, even in genotypes with relatively low copy number of these genes. Moreover, we observed rDNA homogenization towards the paternally transmitted Canina ribotype in 6x R. agrestis. The here‐observed variation in arrangement and composition of rDNA types between R. canina and R. inodora suggests the involvement of different genomes in bivalent formation. This results supports the hypothesis that the asymmetrical meiosis arose at least twice by independent ancient hybridization events.     

Effect of rye Secale cereale L. chromosomes 1R and 3R on polyembryony expression in hybrid combinations between ( Hordeum L.)-Triticum aestivum L. alloplasmic recombinant lines and wheat-rye substitution lines T. aestivum L.- S. cereale L.

The effect of rye chromosomes on polyembryony was studied for reciprocal hybrid combinations between (Hordeum vulgare L.)-Triticum aestivum L. alloplasmic recombinant lines and five wheat T. aestivum L. (cultivar Saratovskaya 29)-rye Secale cereale L. (cultivar Onokhosikaya) substitution lines: 1R(1D), 2R(2D), 3R(3B), 5R(5A), and 6R(6A), and for direct hybrid combinations between the [H. marinum ssp. gussoneanum (H. geniculatum All.)]-T. aestivum alloplasmic recombinant line and the wheat-rye substitution lines 1R(1A), 1R(1D), and 3R(3B). Chromosomes 1R and 3R of rye cultivar Onokhoiskaya proved to affect the expression of polyembryony in the hybrid combinations that involved the alloplasmic recombinant lines of common wheat as maternal genotypes. Based on this finding, polyembryony was regarded as a phenotypic expression of nuclear-cytoplasmic interactions where an important role is played by rye chromosomes 1R and 3R and the H. vulgare cytoplasm. Consideration is given to the association between the effect of rye chromosomes 1R and 3R on polyembryony in the [(Hordeum)-T. aestivum × wheat-rye substitution lines] hybrid combinations and their stimulating effect on the development on androgenic embryoids in isolated anther cultures of the wheat-rye substitution lines. Original Russian Text ? L.A. Pershina, T.S. Rakovtseva, L.I. Belova, E.P. Devyatkina, O.G. Silkova, L.A. Kravisova, A.I. Shchapova, 2007, published in Genetika, 2007, Vol. 43, No. 7, pp. 955–962.     

Rotala belgaumensis sp. nov. (Lythraceae) from western Ghats,India

During a floristic survey in the Belgaum district, Karnataka state, some specimens of Rotala L. were collected from a lateritic plateau in western Ghats, India. The specimens did not match with any previously described species of Rotala, but closely resembled R. macrandra Koehne and R. rosea (Poir.) C. D. K. Cook ex H. Hara in their exserted stamens and styles. The new species is described and illustrated here as Rotala belgaumensis S. R. Yadav, Malpure & Chandore.     

Indian chytrids. III. Species of rhizophlyctis isolated on human fibrin film

Summary Human fibrin film has been used as an additional substratum to trap zoosporic fungi in watered soil samples. This semi-transparent film is prepared from human plasma proteins by fractionation and is used as a substitute in dural surgery.Three new species ofRhizophlyctis, R. lovetti, R. fuscis, andR. hirsutus, as well asPhlyctorhiza variabilis and numerous other water molds have been trapped on this substratum in watered soil samples from India.This study has been supported by the U. S. Program in Biology, International Indian Ocean Expedition, and conducted at the Central Marine Fisheries Research Institute, Mandapam Camp, Madras State. I am very grateful to Dr.S. Jones, Director of the Institute, for research facilities and assistance.     

Massive uprooting of Littorella uniflora (L.) Asch. during a storm event and its relation to sediment and plant characteristics

During spring storms massive uprooting of Littorella uniflora occurred in a shallow Dutch softwater lake. The aim of this study was to test whether changes in plant morphology and sediment characteristics could explain the observed phenomenon. Uprooting was expected to occur in plants having a high shoot biomass and low root to shoot ratio (R:S), growing on sediments with a high organic matter content. Normally, uprooting of the relative buoyant L. uniflora is prevented by an extensive root system, expressed as a high R:S. This was studied by sampling floating and still rooted L. uniflora plants, as well as sediment and sediment pore water, along a gradient of increasing sediment organic matter content. Increasing organic matter content was related to increasing L. uniflora shoot biomass and consequently decreasing R:S. Furthermore, the results indicated that uprooting indeed occurred in plants growing on very organic sediments and was related to a low R:S. The increased shoot biomass on more organic sediments could be related to increased sediment pore water total inorganic carbon (TIC; mainly CO₂) availability. Additionally, increased phosphorus availability could also have played a role. The disappearance of L. uniflora might lead to higher nutrient availability in the sediments. It is suggested that this could eventually promote the expansion of faster‐growing macrophytes.     

Spiradiclis coriaceifolia and S. tonglingensis spp. nov. (Rubiaceae,Ophiorrhizeae) from Guangxi,China

Two new species, Spiradiclis coriaceifolia R.‐J. Wang and S. tonglingensis R.‐J. Wang, from China, are described and illustrated. Their palynological characters are described based on SEM observations.