Trait similarity, shared ancestry and the structure of neighbourhood interactions in a subtropical wet forest: implications for community assembly

Ecology Letters (2010) 13: 1503-1514 ABSTRACT: The phylogenetic structure and distribution of functional traits in a community can provide insights into community assembly processes. However, these insights are sensitive to the spatial scale of analysis. Here, we use spatially explicit, neighbourhood models of tree growth and survival for 19 tree species, a highly resolved molecular phylogeny and information on eight functional traits to quantify the relative efficacy of functional similarity and shared ancestry in describing the effects of spatial interactions between tree species on demographic rates. We also assess the congruence of these results with observed phylogenetic and functional structure in the neighbourhoods of live and dead trees. We found strong support for models in which the effects of spatial neighbourhood interactions on tree growth and survival were scaled to species-specific mean functional trait values (e.g., wood specific gravity, leaf succulence and maximum height) but not to phylogenetic distance. The weak phylogenetic signal in functional trait data allowed us to independently interpret the static neighbourhood functional and phylogenetic patterns. We observed greater functional trait similarity in the neighbourhoods of live trees relative to those of dead trees suggesting that environmental filtering is the major force structuring this tree community at this scale while competitive interactions play a lesser role.     

On the evolutionary stability of sink populations

The evolution of adaptive behaviours can influence population dynamics. Conversely, population dynamics can affect both the rate and direction of adaptive evolution. This paper examines reasons why sink populations – populations maintained by immigration, preventing local extinction – might persist in the habitat repertoire of a species over evolutionary time-scales. Two such reasons correspond to standard explanations for deviations from an ideal free habitat distribution: organisms may not be free to settle in whichever habitat has the highest potential fitness, and may be constrained by costs, perceptual limitations, or mode of dispersal in the acuity of their habitat selectivity. Here, I argue that a third general reason for persistent sink populations is provided by unstable population dynamics in source habitats. I present a simple model illustrating how use of a sink habitat may be selectively advantageous, when a source population has unstable dynamics (which necessarily reflects temporal variation in local fitnesses). Species with unstable local dynamics in high-quality habitats should be selected to utilize a broader range of habitats than species with stable local dynamics, and in particular in some circumstances should utilize sink habitats. This observation has implications for the direction of niche evolution, and the likelihood of niche conservatism.     

Multiregional comparison of the ecological and phylogenetic structure of butterfly species richness gradients

Aim To examine butterfly species richness gradients in seven regions/countries and to quantify geographic mean root distance (MRD) patterns. My primary goal is to determine the extent to which an explanation for butterfly richness patterns based on tropical niche conservatism and the evolution of cold tolerance, proposed for the fauna of Canada and the USA, applies to other parts of the world. Location USA/Canada, Mexico, Europe/NW Africa, Transbaikal Siberia, Chile, South Africa and Australia. Methods Digitized range maps for butterfly species in each region were used to map richness patterns in summer (for all areas) and winter (for USA/Canada, Europe/NW Africa and Australia). A phylogeny resolved to subfamily was used to map the geographic MRD patterns. Regression trees and general linear models examined climatic and vegetation correlates of species richness and MRD within and among regions. Results Various combinations of climate and vegetation were strong predictors of species richness gradients within regions, but unresolved ‘regional’ factors contributed to the multiregional pattern. Regionally based differences in phylogenetic structure also exist, but MRD is negatively correlated with temperature both within and across areas. MRD patterns consistent with tropical niche conservatism occur in most areas. With a possible partial exception of Mexico, faunas in cold climates and in mountains are more derived than faunas in lowlands and tropical/subtropical climates. In USA/Canada, Europe and Australia, winter faunas are more derived than summer faunas. Main conclusions The phylogenetic pattern previously found in the USA and Canada is widespread in both the Northern and Southern Hemispheres, and niche conservatism and the evolution of cold tolerance is the likely explanation for the development of the global butterfly species richness gradient over evolutionary time. Contemporary climate also influences species richness patterns but is unlikely to be a complete explanation globally. The importance of climate is also manifested in the seasonal loss of more basal butterfly elements outside the tropics in winter.     

Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species

Ecologists are increasingly adopting an evolutionary perspective, and in recent years, the idea that closely related species are ecologically similar has become widespread. In this regard, phylogenetic signal must be distinguished from phylogenetic niche conservatism. Phylogenetic niche conservatism results when closely related species are more ecologically similar that would be expected based on their phylogenetic relationships; its occurrence suggests that some process is constraining divergence among closely related species. In contrast, phylogenetic signal refers to the situation in which ecological similarity between species is related to phylogenetic relatedness; this is the expected outcome of Brownian motion divergence and thus is necessary, but not sufficient, evidence for the existence of phylogenetic niche conservatism. Although many workers consider phylogenetic niche conservatism to be common, a review of case studies indicates that ecological and phylogenetic similarities often are not related. Consequently, ecologists should not assume that phylogenetic niche conservatism exists, but rather should empirically examine the extent to which it occurs.     

Genetic diversity and ecological niche modelling of the restricted Recordia reitzii (Verbenaceae) from southern Brazilian Atlantic forest

Genetic diversity analyses, coupled with ecological niche modelling (ENM) of species with a restricted distribution, may provide valuable information for understanding diversification patterns in endangered areas. We analyzed the genetic diversity of Recordia reitzii, a tree restricted to the threatened and highly fragmented Brazilian Atlantic forest, using three intergenic cpDNA spacers and ten microsatellite (SSR) loci. To assess the historical processes that may have influenced the distribution of extant R. reitzii populations, the current potential distributions of R. reitzii and Recordia boliviana, a closely related species, were modelled and projected onto the Last Glacial Maximum (LGM) and Last Interglacial (LIG) periods. Niche divergence was quantified between these two. The cpDNA and SSR data showed a north–south pattern of the diversity distribution and structured populations, suggesting that gene flow is probably limited. According to our data, R. reitzii exhibits low genetic diversity, which may be a result of a founder or distribution‐reduction effect, narrow distribution or small population size. The ecological niche models showed a wider palaeodistribution during the LIG and a retraction during the LGM for both species. Tests of niche divergence and conservatism indicated that bioclimatic factors might have influenced the diversification of these Recordia species. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 176 , 332–348.     

Travelling to a former sea floor: colonization of forests by understorey plant species on land recently reclaimed from the sea

Questions: What are important forest characteristics determining colonization of forest patches by forest understorey species? Location: Planted forests on land recently reclaimed from the sea, the Netherlands. Methods: We related the distribution of forest specialist species in the understorey of 55 forests in Dutch IJsselmeer polders to the following forest characteristics: age, area, connectivity, distance to mainland (as a proxy for distance to seed source) and path density. We used species of the Fraxino‐Ulmetum association for the Netherlands as reference for species that could potentially occur in the study area. Results: Area and age of the surveyed forests explained a large part of the variation in overall species composition and species number of forest plant species. The importance of connectivity and distance to the mainland of forest habitats became apparent only at a more detailed level of dispersal groups and individual species. The importance of forest parameters differed between dispersal groups and also between individual species. After 60 years, 75% of the potential pool of wind‐dispersed species has reached the polders, whereas this was only 50% for species lacking specific adaptations to long‐distance dispersal. However, the average percentage of successful colonizing species present per forest was substantially lower, ranging from 15 to 37%. Conclusions: The data strongly suggest that the colonization process in polder forests is still in its initial phase, during which easily dispersed species dominate the vegetation. Colonization success of common species that lack adaptations to long‐distance dispersal is affected by spatial configuration of the forests, and most rare species that could potentially occur in these forests are still absent. Implications for conservation of rare species in fragmented landscapes are discussed.     

Patterns of hind limb motor output during walking in the salamander Dicamptodon tenebrosus,with comparisons to other tetrapods

Based on similarity of motor patterns of lizards, crocodiles, birds and mammals, various authors have concluded that a number of homologous muscles across these taxa demonstrate neuromuscular conservatism. This hypothesis remains untested for more basal taxa. Therefore, a quantitative electromyographic study of the hind limb during treadmill walking (mean speed of 0.75 SVL/s) in the salamander Dicamptodon tenebrosus was undertaken. Muscles located ventrally on the hind limb become active just before foot placement on the substrate, and maintain activity through the first half of the stance phase. Dorsally located muscles begin activity at or just before the start of the swing phase, and fire through the first half of swing. Several muscles showed a secondary EMG burst during the stride. The second burst in most ventral muscles occurred in late stance. In all dorsal muscles with double bursts, the second burst occurred in the middle of stance. Comparison of electromyographic onset and offset values for Dicamptodon to those for presumed homologues in other tetrapods reveals similarity in activity patterns for all ventral and two dorsal muscles despite anatomical rearrangements, supporting the hypothesis of neuromuscular conservatism for some muscles but not others.Abbreviations BF biceps femoris muscle - CDF caudofemoralis muscle - CPIT caudalipuboischiotibialis muscle - Dist distal - EDC extensor digitorum communis muscle - EMG electromyogram - EXF extensor cruris et tarsi fibularis muscle - EXT extensor cruris tibialis muscle - FMFB femorofibularis muscle - FPC flexor primordialis communis muscle - Gastroc gastrocnemius muscle - ILFB iliofibularis muscle - ILFM iliofemoralis muscle - ILTA extensor iliotibialis pars anterior muscle - ILTP extensor iliotibialis pars posterior muscle - ISC ischiocaudalis muscle - ISF ischioflexorius muscle - ISFM ischiofemoralis muscle - ITCR iliotrochantericus cranialis muscle - ITM iliotrochantericus medius muscle - MG medial gastrocnemius muscle - PFM pubifemoralis muscle - PIFE puboischiofemoralis externus muscle - PIFI puboischiofemoralis internus muscle - PIT puboischiotibialis muscle - Prox proximal - PTB pubotibialis muscle - Sol soleus muscle - ST semitendinosus muscle - SVL snout-vent length     

The spatial relationship between post‐crop remaining trees and the establishment of saplings in Pinus sylvestris stands in Spain

Question: What is the spatial relationship between remaining trees and the establishment and development of recruited saplings? Location: The Pinus sylvestris forest Pinar de Valsaín, in the Sistema mountain range (central Spain). Methods: Three 0.5 ha plots have been analysed. The saplings were located in a 2 m x 2 m grid, characterizing their spatial pattern through a nested ANO VA. The spatial pattern of stems was analysed using the L(d) function. To analyse the spatial relationship between stems belonging to different cohorts, the intertype L_rs(d) function was used. Finally a new function K_rx(d) is presented as a method to analyse the relationship between the spatial distribution of stems and the sapling density (a sampled continuous variable). Results: The mother trees show cluster pattern at scales of ca. 12 m ‐ 22 m, leading to a spatial pattern at 14 m–16 m for the saplings during the regeneration period. At the beginning of the shelter phase, saplings less than 1.30 m in height show spatial repulsion from the old crop at distances above 10 m, whereas taller saplings show repulsion at shorter distances, due to the suppression of sapling development near the mother trees. At the end of the regeneration period, saplings < 1.30 m appear under the last remaining mother tree canopies. Conclusions: In the stands analysed, located at the southern limit of Pinus sylvestris distribution, this species behaves as half‐shade tolerant. This study shows that the K_rx(d) function might be widely applied to analyse the relationship between patterns that occur at different scales or between a point pattern and a continuous variable, being a useful tool for analysing some forest processes.     

Researching the potential of forest tree mycorrhizae

Summary During the last century important ecological and physiological principles in mycorrhizal associations were discovered. Effects of litter extracts on the microflora, nutrient uptake and translocation; hormonal relations, the M factor, and physiogical requirements of ectomycorrhizal fungi and metabolite exchanges are among those of particular significance. Reconsideration of this era of mycorrhizal research is worthy of current consideration since progress particularly in physiology has been slow. To derive the potentially vast benefits from mycorrhizal associations in field applications and to achieve genetic alteration to improve physiological benefits derived from mycorrhizas, fundamental characteristics and biochemical mechanisms in the fungus-root complex must be better understood.     

The Value of Opinion in Science and the Forest Service Research Organization

ABSTRACT There is confusion about conflicts of interest between sources of funding and the extent to which Forest Service researchers are free to publish their findings. Forest Service Research is an independent entity with no administrative accountability to policy makers up to the office of the Chief of the Forest Service. Congressional mandate ensures that research will be free from the influence of politics that land management necessarily entails. Because politics involves opinions, it is important to note that opinions per se are not scientific and must be appropriately compared with empirical data before they can be considered so. It is the quantitative test of an opinion that renders it scientific, not the opinion itself.     

The effect of metapopulation dynamics on the survival and spread of a novel, conspicuous prey

Animals that deploy chemical defences against predators often signal their unprofitability using bright colouration. This pairing of toxicity and conspicuous patterning is known as aposematism.Explaining the evolution and spread of aposematic traits in previously cryptic species has been the focus of much empirical and theoretical work over the last two decades. Existing research concerning the initial evolution of aposematism does not however properly consider that many aposematic species (such as members of the hymenoptera, the lepidoptera, and amphibia) are highly mobile. We argue in this paper that the evolution of aposematic displays is therefore often best understood within a metapopulation framework; hence in this paper we present the first explicit metapopulation model of the evolution of aposematism. Our most general finding is that migration tends to reduce the probability that an aposematic prey can increase from rarity and spread across a large population. Hence, the best case scenarios for the spread of aposematism required fixation of the aposematic form in one or more isolated sub-habitats prior to some event which subsequently enabled migration. We observed that changes in frequency of new aposematic forms within source habitats are likely to be nonmonotonic. First, aposematic prey tend to decline in frequency as they migrate outwards from the source habitat to neighbouring sink habitats, but subsequently they increase in relative abundance in the source, as the descendents of earlier migrants migrate back from newly converted sub-populations. This pattern of initial loss and subsequent gain between new source and neighbouring sink habitats is then repeated as the aposematic form spreads via a moving cline.     

Factors involved in the degradation of mangrove forests in Iran: A mixed study for the management of this ecosystem

In Iran, mangroves are located in the south of the country, where they fulfill essential ecosystem functions, but some parts of them have been destroyed for various reasons in recent years so that it seems necessary to have a management plan consistent with the conservation of this ecosystem. But, it needs knowledge of the trend of and reasons for the degradation of these forests. So, the primary idea of this research was to discover the factors involved in the degradation of these forests and how to manage them. So, the research first used the remote sensing technique to determine the rate of their degradation over the last 20 years. Then, using the Delphi technique, 45 factors were identified for the degradation of these forests and they were classified into five categories including climatic and environmental, anthropogenic, socioeconomic, psychological, and policymaking and legal. Finally, the analytic hierarchy process (AHP) was used to rank these factors within two management paradigms of remediability and preventability so that the ecosystem can be soundly managed by classifying these factors. Overall, the results can provide policymakers with new insights into forest management and the policies presented here can contribute to the sustainability of this ecosystem.